Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013968

Physical Location & Seq

Genomic Coordinates Reverse (-)

26685186 .. 26686109

Gene Structure 924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1224100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAAGCCCCATGCATCTGATCCATCCCTCTCTGAAAACTCAAGCATTTTCCCACGCTCAGAGGCACCACTACCACCAAACCTACTCGAAGGCCCAAATATGGTAACCCCAAGTGCAGAAAAGCAACCATCTGTACAAGATCATCACCAAGGACACCCTCAAGATCAAATCCGTAATCTTGCATTGGATCTAAGCCTCTCAAACAAGAAATCTGATCATGGGTCGAAGCCGGAACTCAACCTCATCAACTGTTTTGATTCAAACAACACATCAAGAAACTCTTCATCAGAGACTTCCAGTCCCAAAGGTGCTACTACTACTACTACTGCTACTACTGATTTCAAGCCAAGGGTTTTCTCCTGCAATTATTGCCGGAGAAAATTTTACAGTTCACAAGCTCTCGGAGGGCACCAAAATGCTCATAAGAGAGAAAGAACACTTGCCAAAAAAGGGCAAAAGAGTAATTGTACTGCAGCAGCAGAGGATGCCTTGATGAGGCTTCCAAGTTTACTCTCTTCACACAGATTCTCCAGCATGGCTTCTCTCCCTTTGCATGGCTCCTTCAATGATAGGTCACTTGGTATTCAAGTGCATTCCACAATTCACAAGCCTTGTTACCAATCAAACACCTTTGGTGAGAATAATAATGGTAACTATGGGTGGTTTAGACGGCCTATTGATCATCAACATGCAATCGGGCGGCTTGTTTCACCCAACAATGTTTTTCATGTGCAGGGCGGCGTAGGTTCCTCCTCCTCACCATCGAGTGGTGGCGTTGGAAGGTTTTCCTATAGTACTAATGGTCGGAAGTTTTCTCCGGTGGCGGAAGGAATTGGAGGGTTGTGGTGGACTAATAGTGCTGCTGGCCATTTTAATGCTAAACAAGATGAGTTGCAGAAGCTTGACTTGTCCCTCAAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

33.45

Weight (kDa)

9.49

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80730
fragaria_vesca	FvH4_6g28840
malus_domestica	MD09G1224100.v1.1 MD17G1221300.v1.1
prunus_persica	Prupe.3G096400_v2.0.a1
pyrus_communis	pycom17g22570
rosa_chinensis	RchiOBHm_Chr2g0133371
rosa_laevigata	RLG00000019327
rosa_multiflora	Rmu_sc0003874.1_g000010 Rmu_sc0038578.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111220
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363800 Rh2BG369700 Rh2CG347000 Rh2DG386500
rosa_wichuraiana	Rw2G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	64, 408
AccB7I	CCANNNNNTGG	1 cut(s)	767
AciI	CCGC	3 cut(s)	700, 738, 824
AclWI	GGATC	2 cut(s)	14, 195
AcoI	YGGCCR	1 cut(s)	865
AcsI	RAATTY	1 cut(s)	380
AfaI	GTAC	3 cut(s)	135, 469, 796
AfiI	CCNNNNNNNGG	5 cut(s)	100, 450, 495, 554, 767
AgsI	TTSAA	4 cut(s)	261, 343, 565, 587
AhdI	GACNNNNNGTC	1 cut(s)	297
AluBI	AGCT	3 cut(s)	398, 901, 919
AluI	AGCT	3 cut(s)	398, 901, 919
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	2 cut(s)	14, 195
AoxI	GGCC	3 cut(s)	91, 671, 865
ApeKI	GCWGC	3 cut(s)	473, 476, 860
ApoI	RAATTY	1 cut(s)	380
Asp700I	GAANNNNTTC	2 cut(s)	280, 784
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	4 cut(s)	137, 647, 702, 750
BaeGI	GKGCMC	1 cut(s)	411
BalI	TGGCCA	1 cut(s)	867
BanI	GGYRCC	2 cut(s)	64, 408
BbvI	GCAGC	3 cut(s)	485, 488, 847
BccI	CCATC	3 cut(s)	31, 136, 769
BceAI	ACGGC	1 cut(s)	686
BclI	TGATCA	2 cut(s)	214, 679
BcoDI	GTCTC	1 cut(s)	284
BfmI	CTRYAG	2 cut(s)	471, 790
BisI	GCNGC	5 cut(s)	474, 477, 701, 739, 861
BlsI	GCNGC	5 cut(s)	475, 478, 702, 740, 862
BmcAI	AGTACT	1 cut(s)	796
BmeRI	GACNNNNNGTC	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	4 cut(s)	66, 410, 559, 748
BmsI	GCATC	2 cut(s)	23, 475
BpmI	CTGGAG	1 cut(s)	514
BpuEI	CTTGAG	3 cut(s)	25, 144, 899
BsaJI	CCNNGG	2 cut(s)	148, 347
BsaWI	WCCGGW	1 cut(s)	817
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	5 cut(s)	100, 450, 495, 554, 767
Bse1I	ACTGG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	148, 347
BseGI	GGATG	2 cut(s)	23, 490
BseLI	CCNNNNNNNGG	5 cut(s)	100, 450, 495, 554, 767
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	2 cut(s)	742, 745
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	3 cut(s)	485, 488, 847
BsgI	GTGCAG	2 cut(s)	135, 752
BshFI	GGCC	3 cut(s)	93, 673, 867
BshNI	GGYRCC	2 cut(s)	64, 408
BsiSI	CCGG	3 cut(s)	230, 373, 818
BslFI	GGGAC	2 cut(s)	285, 895
BslI	CCNNNNNNNGG	5 cut(s)	100, 450, 495, 554, 767
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	2 cut(s)	285, 895
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	3 cut(s)	93, 673, 867
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	6 cut(s)	19, 139, 163, 187, 214, 679
BspACI	CCGC	3 cut(s)	700, 738, 824
BspANI	GGCC	3 cut(s)	93, 673, 867
BspCNI	CTCAG	1 cut(s)	71
BspLI	GGNNCC	4 cut(s)	66, 410, 559, 748
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	2 cut(s)	14, 195
BspT107I	GGYRCC	2 cut(s)	64, 408
BsrGI	TGTACA	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	2 cut(s)	148, 347
BssMI	GATC	6 cut(s)	19, 139, 163, 187, 214, 679
BssT1I	CCWWGG	2 cut(s)	148, 347
Bst4CI	ACNGT	2 cut(s)	251, 389
Bst6I	CTCTTC	2 cut(s)	286, 520
BstAPI	GCANNNNNTGC	2 cut(s)	369, 485
BstAUI	TGTACA	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	865
BstDEI	CTNAG	2 cut(s)	58, 191
BstEII	GGTNACC	1 cut(s)	103
BstENI	CCTNNNNNAGG	1 cut(s)	493
BstF5I	GGATG	2 cut(s)	23, 490
BstKTI	GATC	6 cut(s)	22, 142, 166, 190, 217, 682
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	6 cut(s)	19, 139, 163, 187, 214, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	369, 485
BstNSI	RCATGY	1 cut(s)	692
BstPI	GGTNACC	1 cut(s)	103
BstSFI	CTRYAG	2 cut(s)	471, 790
BstSLI	GKGCMC	1 cut(s)	411
BstV1I	GCAGC	3 cut(s)	485, 488, 847
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	3 cut(s)	93, 673, 867
BtsCI	GGATG	2 cut(s)	23, 490
Cac8I	GCNNGC	1 cut(s)	865
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	134, 468, 795
CviAII	CATG	6 cut(s)	11, 218, 535, 554, 689, 728
CviQI	GTAC	3 cut(s)	134, 468, 795
DdeI	CTNAG	2 cut(s)	58, 191
DpnI	GATC	6 cut(s)	21, 141, 165, 189, 216, 681
DpnII	GATC	6 cut(s)	19, 139, 163, 187, 214, 679
DriI	GACNNNNNGTC	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	865
Eam1104I	CTCTTC	2 cut(s)	286, 520
Eam1105I	GACNNNNNGTC	1 cut(s)	297
EarI	CTCTTC	2 cut(s)	286, 520
EciI	GGCGGA	1 cut(s)	839
Eco130I	CCWWGG	2 cut(s)	148, 347
Eco91I	GGTNACC	1 cut(s)	103
EcoNI	CCTNNNNNAGG	1 cut(s)	493
EcoO65I	GGTNACC	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	148, 347
EcoT22I	ATGCAT	1 cut(s)	16
ErhI	CCWWGG	2 cut(s)	148, 347
FaeI	CATG	6 cut(s)	14, 221, 538, 557, 692, 731
FalI	AAGNNNNNCTT	4 cut(s)	265, 297, 890, 922
FaqI	GGGAC	2 cut(s)	285, 895
FatI	CATG	6 cut(s)	10, 217, 534, 553, 688, 727
FbaI	TGATCA	2 cut(s)	214, 679
Fnu4HI	GCNGC	5 cut(s)	474, 477, 701, 739, 861
FokI	GGATG	2 cut(s)	10, 497
Fsp4HI	GCNGC	5 cut(s)	474, 477, 701, 739, 861
GluI	GCNGC	5 cut(s)	474, 477, 701, 739, 861
GsuI	CTGGAG	1 cut(s)	514
HaeIII	GGCC	3 cut(s)	93, 673, 867
HapII	CCGG	3 cut(s)	230, 373, 818
Hin1II	CATG	6 cut(s)	14, 221, 538, 557, 692, 731
HindIII	AAGCTT	1 cut(s)	899
HinfI	GANTC	2 cut(s)	257, 525
HpaII	CCGG	3 cut(s)	230, 373, 818
HphI	GGTGA	4 cut(s)	137, 647, 702, 750
Hpy166II	GTNNAC	3 cut(s)	392, 509, 849
Hpy188I	TCNGA	7 cut(s)	19, 34, 61, 214, 289, 404, 807
Hpy188III	TCNNGA	2 cut(s)	161, 273
Hpy8I	GTNNAC	3 cut(s)	392, 509, 849
HpyAV	CCTTC	4 cut(s)	83, 571, 774, 821
HpyCH4III	ACNGT	2 cut(s)	251, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	369, 485
HpyF3I	CTNAG	2 cut(s)	58, 191
Hsp92II	CATG	6 cut(s)	14, 221, 538, 557, 692, 731
Ksp22I	TGATCA	2 cut(s)	214, 679
Kzo9I	GATC	6 cut(s)	19, 139, 163, 187, 214, 679
LmnI	GCTCC	1 cut(s)	563
LpnPI	CCDG	8 cut(s)	243, 310, 373, 386, 544, 719, 831, 849
Lsp1109I	GCAGC	3 cut(s)	485, 488, 847
LweI	GCATC	2 cut(s)	23, 475
MaeIII	GTNAC	4 cut(s)	103, 573, 614, 650
MalI	GATC	6 cut(s)	21, 141, 165, 189, 216, 681
MboI	GATC	6 cut(s)	19, 139, 163, 187, 214, 679
MboII	GAAGA	2 cut(s)	273, 507
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	411
MlsI	TGGCCA	1 cut(s)	867
MluCI	AATT	5 cut(s)	364, 380, 463, 600, 831
MluNI	TGGCCA	1 cut(s)	867
MmeI	TCCRAC	2 cut(s)	757, 785
Mox20I	TGGCCA	1 cut(s)	867
Mph1103I	ATGCAT	1 cut(s)	16
MroXI	GAANNNNTTC	2 cut(s)	280, 784
MscI	TGGCCA	1 cut(s)	867
MseI	TTAA	1 cut(s)	873
MslI	CAYNNNNRTG	3 cut(s)	414, 687, 873
Msp20I	TGGCCA	1 cut(s)	867
MspI	CCGG	3 cut(s)	230, 373, 818
Mva1269I	GAATGC	1 cut(s)	592
MwoI	GCNNNNNNNGC	2 cut(s)	369, 485
NdeII	GATC	6 cut(s)	19, 139, 163, 187, 214, 679
NlaIII	CATG	6 cut(s)	14, 221, 538, 557, 692, 731
NlaIV	GGNNCC	4 cut(s)	66, 410, 559, 748
NmuCI	GTSAC	1 cut(s)	573
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	692
PctI	GAATGC	1 cut(s)	592
PdmI	GAANNNNTTC	2 cut(s)	280, 784
PfeI	GAWTC	2 cut(s)	257, 525
PflMI	CCANNNNNTGG	1 cut(s)	767
PkrI	GCNGC	5 cut(s)	475, 478, 702, 740, 862
PspEI	GGTNACC	1 cut(s)	103
PspN4I	GGNNCC	4 cut(s)	66, 410, 559, 748
PspPI	GGNCC	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	3 cut(s)	135, 469, 796
RsaNI	GTAC	3 cut(s)	134, 468, 795
RseI	CAYNNNNRTG	3 cut(s)	414, 687, 873
SaqAI	TTAA	1 cut(s)	873
SatI	GCNGC	5 cut(s)	474, 477, 701, 739, 861
Sau3AI	GATC	6 cut(s)	19, 139, 163, 187, 214, 679
Sau96I	GGNCC	1 cut(s)	92
ScaI	AGTACT	1 cut(s)	796
SduI	GDGCHC	1 cut(s)	411
SfaNI	GCATC	2 cut(s)	23, 475
SfcI	CTRYAG	2 cut(s)	471, 790
SmiMI	CAYNNNNRTG	3 cut(s)	414, 687, 873
SmlI	CTYRAG	3 cut(s)	40, 159, 914
SmoI	CTYRAG	3 cut(s)	40, 159, 914
Sse9I	AATT	5 cut(s)	364, 380, 463, 600, 831
SsiI	CCGC	3 cut(s)	700, 738, 824
StyI	CCWWGG	2 cut(s)	148, 347
TaaI	ACNGT	2 cut(s)	251, 389
TaqI	TCGA	3 cut(s)	87, 224, 764
TasI	AATT	5 cut(s)	364, 380, 463, 600, 831
TatI	WGTACW	3 cut(s)	133, 467, 794
TauI	GCSGC	2 cut(s)	703, 741
TfiI	GAWTC	2 cut(s)	257, 525
Tru1I	TTAA	1 cut(s)	873
Tru9I	TTAA	1 cut(s)	873
TseFI	GTSAC	1 cut(s)	573
TseI	GCWGC	3 cut(s)	473, 476, 860
Tsp45I	GTSAC	1 cut(s)	573
TspDTI	ATGAA	3 cut(s)	17, 273, 716
TspGWI	ACGGA	1 cut(s)	161
Van91I	CCANNNNNTGG	1 cut(s)	767
XagI	CCTNNNNNAGG	1 cut(s)	493
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	1 cut(s)	692
XmnI	GAANNNNTTC	2 cut(s)	280, 784
ZrmI	AGTACT	1 cut(s)	796
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.