Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013968

Physical Location & Seq

Genomic Coordinates Reverse (-)

35795578 .. 35796976

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAAGCCTCAAGCTTCTGATTACCCTCAGTCTGAAAATTCAAGCCTCAAAGTCTCAATAATGGAAACCCAAAGCCAAAAGCCACATAAACAACCAGTACCAGAAGATACTAATCAACAACTCCCACAACAAGCTCCAAACCCTGCAGATATTGTCTTGGATCTATGCCTCATATCCAACAAAATATCCGATCAGAGGTTGAATACCGAACTCAATCTAATCGACTGCGTCGACTTGAATATGTGTTCCGACGCTAGTACTAATGATCCTAAAGGTACTAGTCATGAGCCTAGAGTTTTCTCCTGCAATTATTGTCAAAGAAAGTTTTACAGTTCCCAAGCACTTGGAGGGCACCAAAATGCTCACAAGAGAGAGAGAACACTGGCAAAAAAAGCAGTGACACACAAGATCGGTGCAGCCTCAGATAACTTTAGGCTTCTCTCACACAGATTCTCTAGCATGGCTTCTCTCCCTTTGCATGGCTCTTTCAATAATAGGTCACTTGGTATTCAAGTGCATTCTACCATTCACAAGCCTTCCTGGCACCAATCAAGTCTTTATGGACATAATGGCAATTTTCTGAGACACCCCATTGATCAACAACCTGCAATTGGGCGGCTTGCTGCCGCTGGATCCATGTCATCGTCTTCTTCAAGTGGTGGTGGCATGGGAAGGTTCGAGACTAGTACTGCTCGGAAGTTTTTTCCGGTGGCTGAAAGAATTGGAGGTTTCTGGTGGAATAGTAGTGTTAGCCATTTGAAGACTACGCAAGATCATGAGTTGCAGAAGCTTGACTTGTCCCTCAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

29.9

Weight (kDa)

9.22

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80730
fragaria_vesca	FvH4_6g28840
malus_domestica	MD09G1224100.v1.1 MD17G1221300.v1.1
prunus_persica	Prupe.3G096400_v2.0.a1
pyrus_communis	pycom17g22570
rosa_chinensis	RchiOBHm_Chr2g0133371
rosa_laevigata	RLG00000019327
rosa_multiflora	Rmu_sc0003874.1_g000010 Rmu_sc0038578.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111220
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363800 Rh2BG369700 Rh2CG347000 Rh2DG386500
rosa_wichuraiana	Rw2G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	613
AccB1I	GGYRCC	2 cut(s)	351, 543
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	2 cut(s)	616, 627
AclWI	GGATC	4 cut(s)	168, 260, 627, 640
AcsI	RAATTY	1 cut(s)	37
AfaI	GTAC	4 cut(s)	99, 259, 277, 688
AfiI	CCNNNNNNNGG	3 cut(s)	195, 479, 611
AgsI	TTSAA	7 cut(s)	42, 202, 238, 490, 512, 654, 760
AhlI	ACTAGT	2 cut(s)	278, 683
AjnI	CCWGG	1 cut(s)	539
AluBI	AGCT	3 cut(s)	14, 134, 790
AluI	AGCT	3 cut(s)	14, 134, 790
Alw26I	GTCTC	3 cut(s)	58, 577, 674
AlwI	GGATC	4 cut(s)	168, 260, 627, 640
ApeKI	GCWGC	2 cut(s)	416, 623
ApoI	RAATTY	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	632
BanI	GGYRCC	2 cut(s)	351, 543
BbsI	GAAGAC	2 cut(s)	639, 767
BbvI	GCAGC	2 cut(s)	428, 610
BciT130I	CCWGG	1 cut(s)	541
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	3 cut(s)	58, 577, 674
BcuI	ACTAGT	2 cut(s)	278, 683
BfaI	CTAG	5 cut(s)	255, 279, 291, 456, 684
BfmI	CTRYAG	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	613
BglI	GCCNNNNNGGC	1 cut(s)	541
BisI	GCNGC	4 cut(s)	417, 617, 624, 627
BlsI	GCNGC	4 cut(s)	418, 618, 625, 628
BmcAI	AGTACT	2 cut(s)	259, 688
Bme1390I	CCNGG	1 cut(s)	541
BmiI	GGNNCC	3 cut(s)	353, 545, 634
BmrFI	CCNGG	1 cut(s)	541
BpiI	GAAGAC	2 cut(s)	639, 767
BsaBI	GATNNNNATC	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	706
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 479, 611
Bse1I	ACTGG	2 cut(s)	95, 387
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	541
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	3 cut(s)	195, 479, 611
BseMII	CTCAG	3 cut(s)	41, 435, 572
BseNI	ACTGG	2 cut(s)	95, 387
BseSI	GKGCMC	1 cut(s)	354
BseXI	GCAGC	2 cut(s)	428, 610
BsgI	GTGCAG	1 cut(s)	435
BshNI	GGYRCC	2 cut(s)	351, 543
BsiSI	CCGG	1 cut(s)	707
BslFI	GGGAC	1 cut(s)	784
BslI	CCNNNNNNNGG	3 cut(s)	195, 479, 611
BsmAI	GTCTC	3 cut(s)	58, 577, 674
BsmFI	GGGAC	1 cut(s)	784
BsmI	GAATGC	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	7 cut(s)	160, 190, 265, 408, 595, 632, 772
BspACI	CCGC	2 cut(s)	616, 627
BspCNI	CTCAG	3 cut(s)	40, 434, 573
BspHI	TCATGA	2 cut(s)	283, 775
BspLI	GGNNCC	3 cut(s)	353, 545, 634
BspMAI	CTGCAG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	613
BspPI	GGATC	4 cut(s)	168, 260, 627, 640
BspT107I	GGYRCC	2 cut(s)	351, 543
BsrI	ACTGG	2 cut(s)	95, 387
BssMI	GATC	7 cut(s)	160, 190, 265, 408, 595, 632, 772
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	3 cut(s)	27, 421, 581
BstKTI	GATC	7 cut(s)	163, 193, 268, 411, 598, 635, 775
BstMAI	GTCTC	3 cut(s)	58, 577, 674
BstMBI	GATC	7 cut(s)	160, 190, 265, 408, 595, 632, 772
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 541
BstNI	CCWGG	1 cut(s)	541
BstSCI	CCNGG	1 cut(s)	539
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	428, 610
BstV2I	GAAGAC	2 cut(s)	639, 767
BstX2I	RGATCY	2 cut(s)	160, 632
BstXI	CCANNNNNNTGG	1 cut(s)	344
BstYI	RGATCY	2 cut(s)	160, 632
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	380, 402
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	1 cut(s)	621
CciI	TCATGA	2 cut(s)	283, 775
CseI	GACGC	2 cut(s)	217, 260
Csp6I	GTAC	4 cut(s)	98, 258, 276, 687
CviAII	CATG	6 cut(s)	284, 460, 479, 637, 667, 776
CviQI	GTAC	4 cut(s)	98, 258, 276, 687
DdeI	CTNAG	3 cut(s)	27, 421, 581
DpnI	GATC	7 cut(s)	162, 192, 267, 410, 597, 634, 774
DpnII	GATC	7 cut(s)	160, 190, 265, 408, 595, 632, 772
EcoRII	CCWGG	1 cut(s)	539
FaeI	CATG	6 cut(s)	287, 463, 482, 640, 670, 779
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FaqI	GGGAC	1 cut(s)	784
FatI	CATG	6 cut(s)	283, 459, 478, 636, 666, 775
FbaI	TGATCA	1 cut(s)	595
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	417, 617, 624, 627
Fsp4HI	GCNGC	4 cut(s)	417, 617, 624, 627
FspBI	CTAG	5 cut(s)	255, 279, 291, 456, 684
GluI	GCNGC	4 cut(s)	417, 617, 624, 627
HapII	CCGG	1 cut(s)	707
HgaI	GACGC	2 cut(s)	217, 260
Hin1II	CATG	6 cut(s)	287, 463, 482, 640, 670, 779
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	2 cut(s)	12, 788
HinfI	GANTC	1 cut(s)	450
HpaII	CCGG	1 cut(s)	707
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	8 cut(s)	19, 34, 190, 195, 250, 424, 582, 696
Hpy188III	TCNNGA	3 cut(s)	284, 679, 776
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	2 cut(s)	233, 254
HpyAV	CCTTC	2 cut(s)	546, 666
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	7 cut(s)	146, 306, 416, 478, 517, 608, 784
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 541
HpyF3I	CTNAG	3 cut(s)	27, 421, 581
Hsp92II	CATG	6 cut(s)	287, 463, 482, 640, 670, 779
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	7 cut(s)	160, 190, 265, 408, 595, 632, 772
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	2 cut(s)	428, 610
MaeI	CTAG	5 cut(s)	255, 279, 291, 456, 684
MaeIII	GTNAC	2 cut(s)	397, 498
MalI	GATC	7 cut(s)	162, 192, 267, 410, 597, 634, 774
MboI	GATC	7 cut(s)	160, 190, 265, 408, 595, 632, 772
MboII	GAAGA	4 cut(s)	116, 639, 642, 772
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	2 cut(s)	160, 632
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	5 cut(s)	37, 307, 574, 609, 720
MmeI	TCCRAC	2 cut(s)	201, 273
MnlI	CCTC	9 cut(s)	18, 36, 56, 179, 189, 341, 430, 719, 812
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	1 cut(s)	707
MspR9I	CCNGG	1 cut(s)	541
MunI	CAATTG	1 cut(s)	609
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	541
MwoI	GCNNNNNNNGC	2 cut(s)	392, 541
NdeII	GATC	7 cut(s)	160, 190, 265, 408, 595, 632, 772
NlaIII	CATG	6 cut(s)	287, 463, 482, 640, 670, 779
NlaIV	GGNNCC	3 cut(s)	353, 545, 634
NmuCI	GTSAC	2 cut(s)	397, 498
PagI	TCATGA	2 cut(s)	283, 775
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PctI	GAATGC	1 cut(s)	517
PfeI	GAWTC	1 cut(s)	450
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	4 cut(s)	418, 618, 625, 628
Psp6I	CCWGG	1 cut(s)	539
PspGI	CCWGG	1 cut(s)	539
PspN4I	GGNNCC	3 cut(s)	353, 545, 634
PstI	CTGCAG	1 cut(s)	148
PsuI	RGATCY	2 cut(s)	160, 632
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	4 cut(s)	99, 259, 277, 688
RsaNI	GTAC	4 cut(s)	98, 258, 276, 687
RseI	CAYNNNNRTG	1 cut(s)	357
SalI	GTCGAC	1 cut(s)	230
SatI	GCNGC	4 cut(s)	417, 617, 624, 627
Sau3AI	GATC	7 cut(s)	160, 190, 265, 408, 595, 632, 772
ScaI	AGTACT	2 cut(s)	259, 688
ScrFI	CCNGG	1 cut(s)	541
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	9 cut(s)	16, 136, 200, 277, 500, 607, 677, 730, 792
SfcI	CTRYAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SpeI	ACTAGT	2 cut(s)	278, 683
Sse9I	AATT	5 cut(s)	37, 307, 574, 609, 720
SsiI	CCGC	2 cut(s)	616, 627
SspMI	CTAG	5 cut(s)	255, 279, 291, 456, 684
StyD4I	CCNGG	1 cut(s)	539
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	3 cut(s)	222, 231, 678
TasI	AATT	5 cut(s)	37, 307, 574, 609, 720
TatI	WGTACW	2 cut(s)	257, 686
TauI	GCSGC	2 cut(s)	619, 629
TfiI	GAWTC	1 cut(s)	450
TscAI	CASTG	2 cut(s)	387, 402
TseFI	GTSAC	2 cut(s)	397, 498
TseI	GCWGC	2 cut(s)	416, 623
Tsp45I	GTSAC	2 cut(s)	397, 498
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	387, 402
Tth111I	GACNNNGTC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	5 cut(s)	255, 279, 291, 456, 684
ZrmI	AGTACT	2 cut(s)	259, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.