Rmu_sc0003874.1_g000010

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003874.1
Physical Location & Seq
Reverse (-)
41952 .. 44880
2929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003874.1_g000010.1.cds

Sequence Viewer

Length: 1284 bp
atgacggcgagcgcgactcaaacggcatggtatgatgacgggggcggcgctggcagatctgggaggatcttggtgggcgtagttggctattcggcttctggatgctcgtggaggtccccgttgctgggtttctccctccggtttgccctcctccctcaggcgaaggcgacgcggctttttgcttcatatggtagcggacgtcaggttgaagccaaggtgcccaagtgcttgggagcccagatcatattaaggtgggtttgggctttggtcaagtttgacccgtttttgggagttcgtttgctaattttcgagtttttgacactctcggttacttttgaactcctggtgagcggatcacctctcttaggtgatcatatcaccggttacggttacggttatggttacggttactattatattttcactgctctcgtgacatatgcagtgcagcgatgtcgttcgacatcaagtcacatgcctcaagcttctgactaccctcagtctgaaaattcaagcctcaaagtctcaataatggaaacccaaagccaaaagccacaaaaacaaccagtaccagaagatactaatcaacaactcccacaacaagctccaaaacctgcagatattgtcttggatctaagcctcatatccaacaaaatatccgatcagaggttgaataccgaactcaatctcatcgactgcgtcgatttgaatatgtgttccgagactagtactgatgatcctaaaggtactagtcatgagcctagagttttctcctgcaattactgtcaaagaaagttttacagttcccaagcacttggagggcaccaaaatgctcacaagagagagagaacactggcaaaaaaagcagtggcacacaagattggtgcagtctcagataactttaggcttctctcacacagattctctagcatggcttctctccctttgcatggctctttcaataataggtcactcggtattcaagtgcattctacaattcacaagccttcctggtaccaatcaagtctttatggacataatggcaattttctgagacaccccattgatcaacaacctgcaattgggcggcttgctgccgctggatccatgtcatcgtcttcttcgagtggtggtggcatgggaaggttcgagactagtactgctcggaagttttttccggtggctgaaagaattggacgtttctggtggaatagtagtgttagccatttgaagactacgcaagatcatgagttgcagaagcttgacttgtccctcaaactctaa

Protein Analysis

427

Amino Acids

47.14

Weight (kDa)

9.44

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013968)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80730
fragaria_vesca FvH4_6g28840
malus_domestica MD09G1224100.v1.1 MD17G1221300.v1.1
prunus_persica Prupe.3G096400_v2.0.a1
pyrus_communis pycom17g22570
rosa_chinensis RchiOBHm_Chr2g0133371
rosa_laevigata RLG00000019327
rosa_multiflora Rmu_sc0003874.1_g000010 Rmu_sc0038578.1_g000001
rosa_roxburghii Rroxscaffold_2G00111220
rosa_rugosa Rorug02G0311200
rosa_samantha Rh2AG363800 Rh2BG369700 Rh2CG347000 Rh2DG386500
rosa_wichuraiana Rw2G029610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 202
Acc36I ACCTGC 2 cut(s) 622, 1084
Acc65I GGTACC 1 cut(s) 1014
AccB1I GGYRCC 3 cut(s) 217, 822, 1014
AccBSI CCGCTC 1 cut(s) 351
AccII CGCG 2 cut(s) 14, 172
AciI CCGC 6 cut(s) 45, 172, 195, 351, 1087, 1098
AclWI GGATC 6 cut(s) 74, 361, 639, 731, 1098, 1111
AcsI RAATTY 1 cut(s) 508
AcyI GRCGYC 1 cut(s) 199
AfaI GTAC 5 cut(s) 570, 730, 748, 1016, 1159
AfiI CCNNNNNNNGG 9 cut(s) 124, 125, 157, 286, 287, 365, 666, 950, 1082
AgeI ACCGGT 1 cut(s) 380
AgsI TTSAA 8 cut(s) 209, 338, 513, 673, 709, 961, 983, 1231
AhdI GACNNNNNGTC 1 cut(s) 468
AhlI ACTAGT 3 cut(s) 725, 749, 1154
AjnI CCWGG 2 cut(s) 342, 1010
AluBI AGCT 3 cut(s) 485, 605, 1261
AluI AGCT 3 cut(s) 485, 605, 1261
Alw26I GTCTC 5 cut(s) 529, 716, 895, 1048, 1145
AlwI GGATC 6 cut(s) 74, 361, 639, 731, 1098, 1111
ApeKI GCWGC 2 cut(s) 448, 1094
ApoI RAATTY 1 cut(s) 508
AsiGI ACCGGT 1 cut(s) 380
Asp718I GGTACC 1 cut(s) 1014
AspLEI GCGC 2 cut(s) 14, 50
AspS9I GGNCC 1 cut(s) 114
AsuHPI GGTGA 4 cut(s) 348, 358, 370, 380
AvaII GGWCC 1 cut(s) 114
AxyI CCTNAGG 1 cut(s) 156
BaeGI GKGCMC 2 cut(s) 222, 825
BamHI GGATCC 1 cut(s) 1103
BanI GGYRCC 3 cut(s) 217, 822, 1014
BanII GRGCYC 1 cut(s) 238
BauI CACGAG 2 cut(s) 106, 431
BbsI GAAGAC 2 cut(s) 1110, 1238
BbvI GCAGC 2 cut(s) 460, 1081
BceAI ACGGC 2 cut(s) 21, 39
BcgI CGANNNNNNTGC 2 cut(s) 437, 471
BciT130I CCWGG 2 cut(s) 344, 1012
BclI TGATCA 2 cut(s) 370, 1066
BcoDI GTCTC 5 cut(s) 529, 716, 895, 1048, 1145
BcuI ACTAGT 3 cut(s) 725, 749, 1154
BfaI CTAG 5 cut(s) 726, 750, 762, 927, 1155
BfmI CTRYAG 1 cut(s) 615
BfoI RGCGCY 1 cut(s) 51
BfuAI ACCTGC 2 cut(s) 622, 1084
BglII AGATCT 1 cut(s) 56
BisI GCNGC 6 cut(s) 46, 173, 449, 1088, 1095, 1098
BlsI GCNGC 6 cut(s) 47, 174, 450, 1089, 1096, 1099
BmcAI AGTACT 2 cut(s) 730, 1159
Bme1390I CCNGG 2 cut(s) 344, 1012
Bme18I GGWCC 1 cut(s) 114
BmeRI GACNNNNNGTC 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 6 cut(s) 116, 219, 235, 824, 1016, 1105
BmrFI CCNGG 2 cut(s) 344, 1012
BmsI GCATC 1 cut(s) 92
BpiI GAAGAC 2 cut(s) 1110, 1238
BplI GAGNNNNNCTC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 465
BsaBI GATNNNNATC 1 cut(s) 582
BsaHI GRCGYC 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 213
BsaWI WCCGGW 3 cut(s) 138, 380, 1177
Bsc4I CCNNNNNNNGG 9 cut(s) 124, 125, 157, 286, 287, 365, 666, 950, 1082
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 2 cut(s) 566, 858
Bse21I CCTNAGG 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 582
BseBI CCWGG 2 cut(s) 344, 1012
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 107
BseJI GATNNNNATC 1 cut(s) 582
BseLI CCNNNNNNNGG 9 cut(s) 124, 125, 157, 286, 287, 365, 666, 950, 1082
BseMII CTCAG 4 cut(s) 170, 512, 906, 1043
BseNI ACTGG 2 cut(s) 566, 858
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 2 cut(s) 222, 825
BseXI GCAGC 2 cut(s) 460, 1081
BseYI CCCAGC 1 cut(s) 124
BsgI GTGCAG 2 cut(s) 467, 906
Bsh1236I CGCG 2 cut(s) 14, 172
BshNI GGYRCC 3 cut(s) 217, 822, 1014
BshTI ACCGGT 1 cut(s) 380
BsiSI CCGG 3 cut(s) 139, 381, 1178
BslFI GGGAC 2 cut(s) 100, 1255
BslI CCNNNNNNNGG 9 cut(s) 124, 125, 157, 286, 287, 365, 666, 950, 1082
BsmAI GTCTC 5 cut(s) 529, 716, 895, 1048, 1145
BsmFI GGGAC 2 cut(s) 100, 1255
BsmI GAATGC 1 cut(s) 988
Bsp1286I GDGCHC 3 cut(s) 222, 238, 825
BspACI CCGC 6 cut(s) 45, 172, 195, 351, 1087, 1098
BspCNI CTCAG 4 cut(s) 169, 511, 905, 1044
BspFNI CGCG 2 cut(s) 14, 172
BspHI TCATGA 2 cut(s) 754, 1246
BspLI GGNNCC 6 cut(s) 116, 219, 235, 824, 1016, 1105
BspMAI CTGCAG 1 cut(s) 619
BspMI ACCTGC 2 cut(s) 622, 1084
BspPI GGATC 6 cut(s) 74, 361, 639, 731, 1098, 1111
BspT107I GGYRCC 3 cut(s) 217, 822, 1014
BsrBI CCGCTC 1 cut(s) 351
BsrFI RCCGGY 1 cut(s) 380
BsrI ACTGG 2 cut(s) 566, 858
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 199
BssSI CACGAG 2 cut(s) 106, 431
BssT1I CCWWGG 1 cut(s) 213
Bst2BI CACGAG 2 cut(s) 106, 431
Bst2UI CCWGG 2 cut(s) 344, 1012
Bst4CI ACNGT 5 cut(s) 389, 395, 407, 785, 803
BstACI GRCGYC 1 cut(s) 199
BstC8I GCNNGC 3 cut(s) 10, 52, 1092
BstDEI CTNAG 6 cut(s) 156, 364, 498, 635, 892, 1052
BstENI CCTNNNNNAGG 2 cut(s) 155, 363
BstF5I GGATG 1 cut(s) 107
BstFNI CGCG 2 cut(s) 14, 172
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 2 cut(s) 14, 50
BstMAI GTCTC 5 cut(s) 529, 716, 895, 1048, 1145
BstMWI GCNNNNNNNGC 3 cut(s) 51, 84, 863
BstNI CCWGG 2 cut(s) 344, 1012
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 2 cut(s) 342, 1010
BstSFI CTRYAG 1 cut(s) 615
BstSLI GKGCMC 2 cut(s) 222, 825
BstUI CGCG 2 cut(s) 14, 172
BstV1I GCAGC 2 cut(s) 460, 1081
BstV2I GAAGAC 2 cut(s) 1110, 1238
BstX2I RGATCY 4 cut(s) 56, 66, 631, 1103
BstXI CCANNNNNNTGG 2 cut(s) 229, 815
BstYI RGATCY 4 cut(s) 56, 66, 631, 1103
Bsu36I CCTNAGG 1 cut(s) 156
BtgZI GCGATG 1 cut(s) 466
BtsCI GGATG 1 cut(s) 107
BtsI GCAGTG 3 cut(s) 423, 450, 873
BtsIMutI CAGTG 4 cut(s) 423, 450, 851, 873
BveI ACCTGC 2 cut(s) 622, 1084
Cac8I GCNNGC 3 cut(s) 10, 52, 1092
CciI TCATGA 2 cut(s) 754, 1246
CfoI GCGC 2 cut(s) 14, 50
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 1 cut(s) 114
CseI GACGC 2 cut(s) 178, 688
Csp6I GTAC 5 cut(s) 569, 729, 747, 1015, 1158
CspAI ACCGGT 1 cut(s) 380
CviAII CATG 8 cut(s) 27, 475, 755, 931, 950, 1108, 1138, 1247
CviQI GTAC 5 cut(s) 569, 729, 747, 1015, 1158
DdeI CTNAG 6 cut(s) 156, 364, 498, 635, 892, 1052
DriI GACNNNNNGTC 1 cut(s) 468
Eam1105I GACNNNNNGTC 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 114
Eco81I CCTNAGG 1 cut(s) 156
EcoNI CCTNNNNNAGG 2 cut(s) 155, 363
EcoO109I RGGNCCY 1 cut(s) 114
EcoRII CCWGG 2 cut(s) 342, 1010
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 8 cut(s) 30, 478, 758, 934, 953, 1111, 1141, 1250
FalI AAGNNNNNCTT 2 cut(s) 1250, 1282
FaqI GGGAC 2 cut(s) 100, 1255
FatI CATG 8 cut(s) 26, 474, 754, 930, 949, 1107, 1137, 1246
FauNDI CATATG 2 cut(s) 187, 439
FbaI TGATCA 2 cut(s) 370, 1066
Fnu4HI GCNGC 6 cut(s) 46, 173, 449, 1088, 1095, 1098
FokI GGATG 1 cut(s) 114
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 6 cut(s) 46, 173, 449, 1088, 1095, 1098
FspBI CTAG 5 cut(s) 726, 750, 762, 927, 1155
GlaI GCGC 2 cut(s) 13, 49
GluI GCNGC 6 cut(s) 46, 173, 449, 1088, 1095, 1098
GsaI CCCAGC 1 cut(s) 128
HaeII RGCGCY 1 cut(s) 51
HapII CCGG 3 cut(s) 139, 381, 1178
HgaI GACGC 2 cut(s) 178, 688
HhaI GCGC 2 cut(s) 14, 50
Hin1I GRCGYC 1 cut(s) 199
Hin1II CATG 8 cut(s) 30, 478, 758, 934, 953, 1111, 1141, 1250
Hin6I GCGC 2 cut(s) 12, 48
HinP1I GCGC 2 cut(s) 12, 48
HindIII AAGCTT 2 cut(s) 483, 1259
HinfI GANTC 2 cut(s) 16, 921
HpaII CCGG 3 cut(s) 139, 381, 1178
HphI GGTGA 4 cut(s) 348, 358, 370, 380
Hpy188I TCNGA 8 cut(s) 490, 505, 661, 666, 721, 895, 1053, 1167
Hpy188III TCNNGA 5 cut(s) 99, 433, 755, 1150, 1247
Hpy99I CGWCG 2 cut(s) 172, 704
HpyAV CCTTC 3 cut(s) 157, 1017, 1137
HpyCH4III ACNGT 5 cut(s) 389, 395, 407, 785, 803
HpyCH4IV ACGT 2 cut(s) 199, 1198
HpyCH4V TGCA 9 cut(s) 443, 448, 617, 777, 887, 949, 988, 1079, 1255
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 84, 863
HpyF3I CTNAG 6 cut(s) 156, 364, 498, 635, 892, 1052
HpySE526I ACGT 2 cut(s) 199, 1198
Hsp92I GRCGYC 1 cut(s) 199
Hsp92II CATG 8 cut(s) 30, 478, 758, 934, 953, 1111, 1141, 1250
HspAI GCGC 2 cut(s) 12, 48
KpnI GGTACC 1 cut(s) 1018
Ksp22I TGATCA 2 cut(s) 370, 1066
LmnI GCTCC 2 cut(s) 233, 610
Lsp1109I GCAGC 2 cut(s) 460, 1081
LweI GCATC 1 cut(s) 92
MaeI CTAG 5 cut(s) 726, 750, 762, 927, 1155
MaeII ACGT 2 cut(s) 199, 1198
MaeIII GTNAC 8 cut(s) 328, 383, 389, 401, 407, 433, 470, 969
MbiI CCGCTC 1 cut(s) 351
MboII GAAGA 4 cut(s) 587, 1110, 1113, 1243
MfeI CAATTG 1 cut(s) 1080
MflI RGATCY 4 cut(s) 56, 66, 631, 1103
MhlI GDGCHC 3 cut(s) 222, 238, 825
MluCI AATT 7 cut(s) 303, 508, 778, 996, 1045, 1080, 1191
MlyI GAGTC 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 672
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 828
MspA1I CMGCKG 1 cut(s) 1100
MspI CCGG 3 cut(s) 139, 381, 1178
MspR9I CCNGG 2 cut(s) 344, 1012
MunI CAATTG 1 cut(s) 1080
Mva1269I GAATGC 1 cut(s) 988
MvaI CCWGG 2 cut(s) 344, 1012
MvnI CGCG 2 cut(s) 14, 172
MwoI GCNNNNNNNGC 3 cut(s) 51, 84, 863
NdeI CATATG 2 cut(s) 187, 439
NlaIII CATG 8 cut(s) 30, 478, 758, 934, 953, 1111, 1141, 1250
NlaIV GGNNCC 6 cut(s) 116, 219, 235, 824, 1016, 1105
NmuCI GTSAC 3 cut(s) 433, 470, 969
NspI RCATGY 1 cut(s) 478
PagI TCATGA 2 cut(s) 754, 1246
PcsI WCGNNNNNNNCGW 3 cut(s) 11, 699, 1121
PctI GAATGC 1 cut(s) 988
PfeI GAWTC 1 cut(s) 921
PflFI GACNNNGTC 1 cut(s) 698
PinAI ACCGGT 1 cut(s) 380
PkrI GCNGC 6 cut(s) 47, 174, 450, 1089, 1096, 1099
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PpuMI RGGWCCY 1 cut(s) 114
Psp5II RGGWCCY 1 cut(s) 114
Psp6I CCWGG 2 cut(s) 342, 1010
PspFI CCCAGC 1 cut(s) 124
PspGI CCWGG 2 cut(s) 342, 1010
PspN4I GGNNCC 6 cut(s) 116, 219, 235, 824, 1016, 1105
PspPI GGNCC 1 cut(s) 114
PspPPI RGGWCCY 1 cut(s) 114
PstI CTGCAG 1 cut(s) 619
PsuI RGATCY 4 cut(s) 56, 66, 631, 1103
PsyI GACNNNGTC 1 cut(s) 698
RsaI GTAC 5 cut(s) 570, 730, 748, 1016, 1159
RsaNI GTAC 5 cut(s) 569, 729, 747, 1015, 1158
RseI CAYNNNNRTG 1 cut(s) 828
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 6 cut(s) 46, 173, 449, 1088, 1095, 1098
Sau96I GGNCC 1 cut(s) 114
ScaI AGTACT 2 cut(s) 730, 1159
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 2 cut(s) 344, 1012
SduI GDGCHC 3 cut(s) 222, 238, 825
SfaNI GCATC 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 615
SinI GGWCC 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 828
SmlI CTYRAG 1 cut(s) 480
SmoI CTYRAG 1 cut(s) 480
SpeI ACTAGT 3 cut(s) 725, 749, 1154
Sse9I AATT 7 cut(s) 303, 508, 778, 996, 1045, 1080, 1191
SsiI CCGC 6 cut(s) 45, 172, 195, 351, 1087, 1098
SspMI CTAG 5 cut(s) 726, 750, 762, 927, 1155
StyD4I CCNGG 2 cut(s) 342, 1010
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 5 cut(s) 389, 395, 407, 785, 803
TaiI ACGT 2 cut(s) 202, 1201
TaqI TCGA 6 cut(s) 309, 461, 693, 702, 1124, 1149
TasI AATT 7 cut(s) 303, 508, 778, 996, 1045, 1080, 1191
TatI WGTACW 2 cut(s) 728, 1157
TauI GCSGC 4 cut(s) 48, 175, 1090, 1100
TfiI GAWTC 1 cut(s) 921
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 4 cut(s) 430, 450, 858, 873
TseFI GTSAC 3 cut(s) 433, 470, 969
TseI GCWGC 2 cut(s) 448, 1094
Tsp45I GTSAC 3 cut(s) 433, 470, 969
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 4 cut(s) 430, 450, 858, 873
Tth111I GACNNNGTC 1 cut(s) 698
VpaK11BI GGWCC 1 cut(s) 114
XagI CCTNNNNNAGG 2 cut(s) 155, 363
XapI RAATTY 1 cut(s) 508
XceI RCATGY 1 cut(s) 478
XspI CTAG 5 cut(s) 726, 750, 762, 927, 1155
ZraI GACGTC 1 cut(s) 200
ZrmI AGTACT 2 cut(s) 730, 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.