Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038578.1

Orthogroup ID

OG0013968

Physical Location & Seq

Genomic Coordinates Forward (+)

606 .. 1358

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038578.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggaaacccaaagccaaaagccacaaaaacaaccagtaccagaagatactaatcaacaactcccacaacaagctccaaaacctgcagatattgtcttggatctaagcctcatatccaacaaaatatccgatcagaggttgaataccgaactcaatctcatcgactgcgtcgatttgaatatgtgttccgagactagtactgatgatcctaaaggtactagtcatgagcctagagttttctcctgcaattactgtcaaagaaagttttacagttcccaagcacttggagggcaccaaaatgctcacaagagagagagaacactggcaaaaaaagcagtggcacacaagattggtgcagtctcagataactttaggcttctctcacacagattctctagcatggcttctctccctttgcatggctctttcaataataggtcactcggtattcaagtgcattctacaattcacaagccttcctggtaccaatcaagtctttatggacataatggcaattttctgagacaccccattgatcaacaacctgcaattgggcggcttgctgccgctggatccatgtcatcgtcttcttcgagtggtggtggcatgggaaggttcgagactagtactgctcggaagttttttccggtggctgaaagaattggacgtttctggtggaatagtagtgttagccatttgaagactacgcaagatcatgagttgcagaagcttgacttgtccctcaaactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

27.87

Weight (kDa)

9.43

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80730
fragaria_vesca	FvH4_6g28840
malus_domestica	MD09G1224100.v1.1 MD17G1221300.v1.1
prunus_persica	Prupe.3G096400_v2.0.a1
pyrus_communis	pycom17g22570
rosa_chinensis	RchiOBHm_Chr2g0133371
rosa_laevigata	RLG00000019327
rosa_multiflora	Rmu_sc0003874.1_g000010 Rmu_sc0038578.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111220
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363800 Rh2BG369700 Rh2CG347000 Rh2DG386500
rosa_wichuraiana	Rw2G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	91, 553
Acc65I	GGTACC	1 cut(s)	483
AccB1I	GGYRCC	2 cut(s)	291, 483
AciI	CCGC	2 cut(s)	556, 567
AclWI	GGATC	4 cut(s)	108, 200, 567, 580
AfaI	GTAC	5 cut(s)	39, 199, 217, 485, 628
AfiI	CCNNNNNNNGG	3 cut(s)	135, 419, 551
AgsI	TTSAA	5 cut(s)	142, 178, 430, 452, 700
AhlI	ACTAGT	3 cut(s)	194, 218, 623
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	2 cut(s)	74, 730
AluI	AGCT	2 cut(s)	74, 730
Alw26I	GTCTC	4 cut(s)	185, 364, 517, 614
AlwI	GGATC	4 cut(s)	108, 200, 567, 580
ApeKI	GCWGC	1 cut(s)	563
Asp718I	GGTACC	1 cut(s)	483
BaeGI	GKGCMC	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	572
BanI	GGYRCC	2 cut(s)	291, 483
BbsI	GAAGAC	2 cut(s)	579, 707
BbvI	GCAGC	1 cut(s)	550
BciT130I	CCWGG	1 cut(s)	481
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	4 cut(s)	185, 364, 517, 614
BcuI	ACTAGT	3 cut(s)	194, 218, 623
BfaI	CTAG	5 cut(s)	195, 219, 231, 396, 624
BfmI	CTRYAG	1 cut(s)	84
BfuAI	ACCTGC	2 cut(s)	91, 553
BisI	GCNGC	3 cut(s)	557, 564, 567
BlsI	GCNGC	3 cut(s)	558, 565, 568
BmcAI	AGTACT	2 cut(s)	199, 628
Bme1390I	CCNGG	1 cut(s)	481
BmiI	GGNNCC	3 cut(s)	293, 485, 574
BmrFI	CCNGG	1 cut(s)	481
BpiI	GAAGAC	2 cut(s)	579, 707
BsaBI	GATNNNNATC	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	646
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 419, 551
Bse1I	ACTGG	2 cut(s)	35, 327
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	481
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	3 cut(s)	135, 419, 551
BseMII	CTCAG	2 cut(s)	375, 512
BseNI	ACTGG	2 cut(s)	35, 327
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	550
BsgI	GTGCAG	1 cut(s)	375
BshNI	GGYRCC	2 cut(s)	291, 483
BsiSI	CCGG	1 cut(s)	647
BslFI	GGGAC	1 cut(s)	724
BslI	CCNNNNNNNGG	3 cut(s)	135, 419, 551
BsmAI	GTCTC	4 cut(s)	185, 364, 517, 614
BsmFI	GGGAC	1 cut(s)	724
BsmI	GAATGC	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
BspACI	CCGC	2 cut(s)	556, 567
BspCNI	CTCAG	2 cut(s)	374, 513
BspHI	TCATGA	2 cut(s)	223, 715
BspLI	GGNNCC	3 cut(s)	293, 485, 574
BspMAI	CTGCAG	1 cut(s)	88
BspMI	ACCTGC	2 cut(s)	91, 553
BspPI	GGATC	4 cut(s)	108, 200, 567, 580
BspT107I	GGYRCC	2 cut(s)	291, 483
BsrI	ACTGG	2 cut(s)	35, 327
BssMI	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	2 cut(s)	254, 272
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	3 cut(s)	104, 361, 521
BstKTI	GATC	6 cut(s)	103, 133, 208, 538, 575, 715
BstMAI	GTCTC	4 cut(s)	185, 364, 517, 614
BstMBI	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	550
BstV2I	GAAGAC	2 cut(s)	579, 707
BstX2I	RGATCY	2 cut(s)	100, 572
BstXI	CCANNNNNNTGG	1 cut(s)	284
BstYI	RGATCY	2 cut(s)	100, 572
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	320, 342
BveI	ACCTGC	2 cut(s)	91, 553
Cac8I	GCNNGC	1 cut(s)	561
CciI	TCATGA	2 cut(s)	223, 715
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	5 cut(s)	38, 198, 216, 484, 627
CviAII	CATG	6 cut(s)	224, 400, 419, 577, 607, 716
CviQI	GTAC	5 cut(s)	38, 198, 216, 484, 627
DdeI	CTNAG	3 cut(s)	104, 361, 521
DpnI	GATC	6 cut(s)	102, 132, 207, 537, 574, 714
DpnII	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
EcoRII	CCWGG	1 cut(s)	479
FaeI	CATG	6 cut(s)	227, 403, 422, 580, 610, 719
FalI	AAGNNNNNCTT	2 cut(s)	719, 751
FaqI	GGGAC	1 cut(s)	724
FatI	CATG	6 cut(s)	223, 399, 418, 576, 606, 715
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	3 cut(s)	557, 564, 567
Fsp4HI	GCNGC	3 cut(s)	557, 564, 567
FspBI	CTAG	5 cut(s)	195, 219, 231, 396, 624
GluI	GCNGC	3 cut(s)	557, 564, 567
HapII	CCGG	1 cut(s)	647
HgaI	GACGC	1 cut(s)	157
Hin1II	CATG	6 cut(s)	227, 403, 422, 580, 610, 719
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	1 cut(s)	390
HpaII	CCGG	1 cut(s)	647
Hpy188I	TCNGA	6 cut(s)	130, 135, 190, 364, 522, 636
Hpy188III	TCNNGA	3 cut(s)	224, 619, 716
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	486, 606
HpyCH4III	ACNGT	2 cut(s)	254, 272
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	7 cut(s)	86, 246, 356, 418, 457, 548, 724
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	3 cut(s)	104, 361, 521
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	6 cut(s)	227, 403, 422, 580, 610, 719
KpnI	GGTACC	1 cut(s)	487
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	1 cut(s)	550
MaeI	CTAG	5 cut(s)	195, 219, 231, 396, 624
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	1 cut(s)	438
MalI	GATC	6 cut(s)	102, 132, 207, 537, 574, 714
MboI	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
MboII	GAAGA	4 cut(s)	56, 579, 582, 712
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	2 cut(s)	100, 572
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	5 cut(s)	247, 465, 514, 549, 660
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	4 cut(s)	119, 129, 281, 752
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	1 cut(s)	647
MspR9I	CCNGG	1 cut(s)	481
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	481
MwoI	GCNNNNNNNGC	1 cut(s)	332
NdeII	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
NlaIII	CATG	6 cut(s)	227, 403, 422, 580, 610, 719
NlaIV	GGNNCC	3 cut(s)	293, 485, 574
NmuCI	GTSAC	1 cut(s)	438
PagI	TCATGA	2 cut(s)	223, 715
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 590
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	390
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	558, 565, 568
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	3 cut(s)	293, 485, 574
PstI	CTGCAG	1 cut(s)	88
PsuI	RGATCY	2 cut(s)	100, 572
PsyI	GACNNNGTC	1 cut(s)	167
RsaI	GTAC	5 cut(s)	39, 199, 217, 485, 628
RsaNI	GTAC	5 cut(s)	38, 198, 216, 484, 627
RseI	CAYNNNNRTG	1 cut(s)	297
SatI	GCNGC	3 cut(s)	557, 564, 567
Sau3AI	GATC	6 cut(s)	100, 130, 205, 535, 572, 712
ScaI	AGTACT	2 cut(s)	199, 628
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	9 cut(s)	76, 85, 140, 217, 440, 547, 617, 670, 732
SfcI	CTRYAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	297
SpeI	ACTAGT	3 cut(s)	194, 218, 623
Sse9I	AATT	5 cut(s)	247, 465, 514, 549, 660
SsiI	CCGC	2 cut(s)	556, 567
SspMI	CTAG	5 cut(s)	195, 219, 231, 396, 624
StyD4I	CCNGG	1 cut(s)	479
TaaI	ACNGT	2 cut(s)	254, 272
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	4 cut(s)	162, 171, 593, 618
TasI	AATT	5 cut(s)	247, 465, 514, 549, 660
TatI	WGTACW	2 cut(s)	197, 626
TauI	GCSGC	2 cut(s)	559, 569
TfiI	GAWTC	1 cut(s)	390
TscAI	CASTG	2 cut(s)	327, 342
TseFI	GTSAC	1 cut(s)	438
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	1 cut(s)	438
TspRI	CASTG	2 cut(s)	327, 342
Tth111I	GACNNNGTC	1 cut(s)	167
XspI	CTAG	5 cut(s)	195, 219, 231, 396, 624
ZrmI	AGTACT	2 cut(s)	199, 628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.