Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013968

Physical Location & Seq

Genomic Coordinates Reverse (-)

7265713 .. 7267365

Gene Structure 1653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G096400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAAACCCAAAAGCCACAAATGCAACAAGCACATGATTATCATCAAGAACACCCACCACAAGCTCCAAACACTGATATTTTATTGGATCTAAGCCTCTCCAACAAGGAACGCGATCACGGGTCGAATCCAGAACTCAATCTCATCAACTGCTTTGATTCAAACGCATCAGGAAACTCTTCACCAGAGACTTCTAGTCCTAAAGGTATAACTGCTCATGATGCTGCTGAGCCAAGGGTTTTCTCCTGCAATTATTGCCAGAGGAAATTTTACAGCTCACAAGCACTTGGAGGGCACCAAAATGCTCATAAGAGAGAGAGAACACTAGCCAAGAAAGGGCACAAGAGTAATTGTACTGCAGCCTCAGCAGATGCCGTAGTTAGGCTTCCAAGTTTACTCTCACACAGATTCTCTAGCATGGCCTCTCTCCCTCTGCATGGCTCTTTCAACAGGTCACTTGGTGTTCAAGTGCATTCTACAATTCACAAGCCTTGTTACCAATTATCAAACACCTTCGGTTCCACAAATACTAGTCTTTATGGAGGGCATAATAGTAATAGTAATGGATGCCTGAGAAAGTCTCTTGATCAACAACCTGCAATTGGGCGGCTTGCTGTACCACAGAACAATGTTTTTCATGTGCAGGGGGGAGTTGGATCGTCGTCATCATCGTCGAGCGGTGGCGTTGGAAGGTTTGTGAATAGTACTAGTGTTCGGAAGTTTTCTCCGGTGACCGAAGGAATTGGAGGGTTGTGGTGGAATAGCAGTGTTGGCCATTTCAAGACTAAGCAAGATGAATTGCAGAAGCTTGACTTGTCCCTCAAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

29.91

Weight (kDa)

9.26

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80730
fragaria_vesca	FvH4_6g28840
malus_domestica	MD09G1224100.v1.1 MD17G1221300.v1.1
prunus_persica	Prupe.3G096400_v2.0.a1
pyrus_communis	pycom17g22570
rosa_chinensis	RchiOBHm_Chr2g0133371
rosa_laevigata	RLG00000019327
rosa_multiflora	Rmu_sc0003874.1_g000010 Rmu_sc0038578.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111220
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363800 Rh2BG369700 Rh2CG347000 Rh2DG386500
rosa_wichuraiana	Rw2G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	604
AccB1I	GGYRCC	1 cut(s)	294
AccBSI	CCGCTC	1 cut(s)	678
AccII	CGCG	1 cut(s)	114
AciI	CCGC	2 cut(s)	607, 678
AclWI	GGATC	2 cut(s)	96, 664
AcoI	YGGCCR	1 cut(s)	772
AcsI	RAATTY	1 cut(s)	266
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	3 cut(s)	355, 618, 706
AfiI	CCNNNNNNNGG	4 cut(s)	336, 381, 437, 602
AgsI	TTSAA	4 cut(s)	162, 448, 467, 781
AhdI	GACNNNNNGTC	1 cut(s)	195
AhlI	ACTAGT	2 cut(s)	530, 707
AluBI	AGCT	4 cut(s)	65, 276, 808, 826
AluI	AGCT	4 cut(s)	65, 276, 808, 826
Alw26I	GTCTC	2 cut(s)	182, 585
AlwI	GGATC	2 cut(s)	96, 664
AoxI	GGCC	2 cut(s)	420, 772
ApeKI	GCWGC	2 cut(s)	224, 359
ApoI	RAATTY	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	174, 742
BaeGI	GKGCMC	2 cut(s)	297, 342
BalI	TGGCCA	1 cut(s)	774
BanI	GGYRCC	1 cut(s)	294
BarI	GAAGNNNNNNTAC	2 cut(s)	369, 401
BbvCI	CCTCAGC	1 cut(s)	364
BbvI	GCAGC	2 cut(s)	211, 371
BceAI	ACGGC	1 cut(s)	359
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	2 cut(s)	182, 585
BcuI	ACTAGT	2 cut(s)	530, 707
BfaI	CTAG	5 cut(s)	195, 326, 414, 531, 708
BfmI	CTRYAG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	604
BisI	GCNGC	3 cut(s)	225, 360, 608
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	3 cut(s)	226, 361, 609
BmcAI	AGTACT	1 cut(s)	706
BmeRI	GACNNNNNGTC	1 cut(s)	195
BmiI	GGNNCC	2 cut(s)	296, 520
BmsI	GCATC	4 cut(s)	176, 211, 361, 557
BplI	GAGNNNNNCTC	2 cut(s)	565, 597
Bpu10I	CCTNAGC	1 cut(s)	364
Bpu1102I	GCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	806
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	727
Bsc4I	CCNNNNNNNGG	4 cut(s)	336, 381, 437, 602
Bse8I	GATNNNNATC	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	233
BseGI	GGATG	1 cut(s)	572
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	4 cut(s)	336, 381, 437, 602
BseMII	CTCAG	3 cut(s)	219, 378, 563
BseSI	GKGCMC	2 cut(s)	297, 342
BseXI	GCAGC	2 cut(s)	211, 371
BsgI	GTGCAG	1 cut(s)	662
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	422, 774
BshNI	GGYRCC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	728
BslFI	GGGAC	1 cut(s)	802
BslI	CCNNNNNNNGG	4 cut(s)	336, 381, 437, 602
BsmAI	GTCTC	2 cut(s)	182, 585
BsmFI	GGGAC	1 cut(s)	802
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	2 cut(s)	422, 774
Bsp1286I	GDGCHC	2 cut(s)	297, 342
Bsp143I	GATC	4 cut(s)	88, 115, 586, 656
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	2 cut(s)	607, 678
BspANI	GGCC	2 cut(s)	422, 774
BspCNI	CTCAG	3 cut(s)	220, 377, 564
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	296, 520
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	2 cut(s)	96, 664
BspT107I	GGYRCC	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	678
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	4 cut(s)	88, 115, 586, 656
BssT1I	CCWWGG	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	184
BstAPI	GCANNNNNTGC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	5 cut(s)	92, 228, 364, 572, 786
BstEII	GGTNACC	1 cut(s)	730
BstF5I	GGATG	1 cut(s)	572
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	4 cut(s)	91, 118, 589, 659
BstMAI	GTCTC	2 cut(s)	182, 585
BstMBI	GATC	4 cut(s)	88, 115, 586, 656
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 221, 255, 365, 771
BstPI	GGTNACC	1 cut(s)	730
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	2 cut(s)	297, 342
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	211, 371
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	422, 774
BtsCI	GGATG	1 cut(s)	572
BtsI	GCAGTG	1 cut(s)	772
BtsIMutI	CAGTG	2 cut(s)	72, 772
BveI	ACCTGC	1 cut(s)	604
Cac8I	GCNNGC	1 cut(s)	612
CciI	TCATGA	1 cut(s)	217
Csp6I	GTAC	3 cut(s)	354, 617, 705
CviAII	CATG	5 cut(s)	35, 218, 418, 437, 638
CviQI	GTAC	3 cut(s)	354, 617, 705
DdeI	CTNAG	5 cut(s)	92, 228, 364, 572, 786
DpnI	GATC	4 cut(s)	90, 117, 588, 658
DpnII	GATC	4 cut(s)	88, 115, 586, 656
DraIII	CACNNNGTG	1 cut(s)	461
DriI	GACNNNNNGTC	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	772
Eam1104I	CTCTTC	1 cut(s)	184
Eam1105I	GACNNNNNGTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	730
EcoO65I	GGTNACC	1 cut(s)	730
EcoT14I	CCWWGG	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	233
FaeI	CATG	5 cut(s)	38, 221, 421, 440, 641
FaiI	YATR	9 cut(s)	36, 209, 219, 309, 419, 438, 540, 549, 639
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FaqI	GGGAC	1 cut(s)	802
FatI	CATG	5 cut(s)	34, 217, 417, 436, 637
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	3 cut(s)	225, 360, 608
FokI	GGATG	1 cut(s)	579
Fsp4HI	GCNGC	3 cut(s)	225, 360, 608
FspBI	CTAG	5 cut(s)	195, 326, 414, 531, 708
GluI	GCNGC	3 cut(s)	225, 360, 608
HaeIII	GGCC	2 cut(s)	422, 774
HapII	CCGG	1 cut(s)	728
Hin1II	CATG	5 cut(s)	38, 221, 421, 440, 641
HindIII	AAGCTT	1 cut(s)	806
HinfI	GANTC	3 cut(s)	127, 158, 408
HpaII	CCGG	1 cut(s)	728
HphI	GGTGA	2 cut(s)	174, 742
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	1 cut(s)	717
Hpy188III	TCNNGA	6 cut(s)	47, 131, 171, 218, 584, 781
Hpy8I	GTNNAC	1 cut(s)	395
Hpy99I	CGWCG	2 cut(s)	664, 676
HpyAV	CCTTC	3 cut(s)	523, 684, 731
HpyCH4V	TGCA	8 cut(s)	25, 249, 359, 436, 472, 599, 643, 802
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 221, 255, 365, 771
HpyF3I	CTNAG	5 cut(s)	92, 228, 364, 572, 786
Hsp92II	CATG	5 cut(s)	38, 221, 421, 440, 641
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	4 cut(s)	88, 115, 586, 656
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	2 cut(s)	211, 371
LweI	GCATC	4 cut(s)	176, 211, 361, 557
MaeI	CTAG	5 cut(s)	195, 326, 414, 531, 708
MaeIII	GTNAC	3 cut(s)	453, 494, 730
MalI	GATC	4 cut(s)	90, 117, 588, 658
MbiI	CCGCTC	1 cut(s)	678
MboI	GATC	4 cut(s)	88, 115, 586, 656
MboII	GAAGA	1 cut(s)	171
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	2 cut(s)	297, 342
MlsI	TGGCCA	1 cut(s)	774
MluCI	AATT	8 cut(s)	250, 266, 349, 480, 500, 600, 741, 797
MluNI	TGGCCA	1 cut(s)	774
MmeI	TCCRAC	3 cut(s)	126, 634, 667
MnlI	CCTC	9 cut(s)	107, 255, 284, 373, 433, 441, 536, 740, 830
Mox20I	TGGCCA	1 cut(s)	774
MroXI	GAANNNNTTC	1 cut(s)	178
MscI	TGGCCA	1 cut(s)	774
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	774
MspI	CCGG	1 cut(s)	728
MunI	CAATTG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	472
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	5 cut(s)	22, 221, 255, 365, 771
NdeII	GATC	4 cut(s)	88, 115, 586, 656
NlaIII	CATG	5 cut(s)	38, 221, 421, 440, 641
NlaIV	GGNNCC	2 cut(s)	296, 520
NmuCI	GTSAC	2 cut(s)	453, 730
PagI	TCATGA	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	668
PctI	GAATGC	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	178
PfeI	GAWTC	3 cut(s)	127, 158, 408
PkrI	GCNGC	3 cut(s)	226, 361, 609
PspEI	GGTNACC	1 cut(s)	730
PspN4I	GGNNCC	2 cut(s)	296, 520
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	3 cut(s)	355, 618, 706
RsaNI	GTAC	3 cut(s)	354, 617, 705
RseI	CAYNNNNRTG	1 cut(s)	300
SatI	GCNGC	3 cut(s)	225, 360, 608
Sau3AI	GATC	4 cut(s)	88, 115, 586, 656
ScaI	AGTACT	1 cut(s)	706
SduI	GDGCHC	2 cut(s)	297, 342
SetI	ASST	9 cut(s)	67, 208, 278, 455, 515, 598, 695, 810, 828
SfaNI	GCATC	4 cut(s)	176, 211, 361, 557
SfcI	CTRYAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
SpeI	ACTAGT	2 cut(s)	530, 707
Sse9I	AATT	8 cut(s)	250, 266, 349, 480, 500, 600, 741, 797
SsiI	CCGC	2 cut(s)	607, 678
SspMI	CTAG	5 cut(s)	195, 326, 414, 531, 708
StyI	CCWWGG	1 cut(s)	233
TaqI	TCGA	2 cut(s)	125, 674
TaqII	GACCGA	1 cut(s)	749
TasI	AATT	8 cut(s)	250, 266, 349, 480, 500, 600, 741, 797
TatI	WGTACW	2 cut(s)	353, 704
TauI	GCSGC	1 cut(s)	610
TfiI	GAWTC	3 cut(s)	127, 158, 408
TscAI	CASTG	2 cut(s)	79, 772
TseFI	GTSAC	2 cut(s)	453, 730
TseI	GCWGC	2 cut(s)	224, 359
Tsp45I	GTSAC	2 cut(s)	453, 730
TspDTI	ATGAA	2 cut(s)	626, 810
TspRI	CASTG	2 cut(s)	79, 772
XapI	RAATTY	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	178
XspI	CTAG	5 cut(s)	195, 326, 414, 531, 708
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.