Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013968

Physical Location & Seq

Genomic Coordinates Reverse (-)

27005340 .. 27006149

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1221300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAAACCCCAAACGCACAGAACCAACAACTAGTGCAAGATCATCACCAAGAACACCCTCAAGCTCAAAACCCTAATCTTCCATTAGATCTAAGCCTCTCAAACAAGGAATCCAATCACGGGGCGAAGCTGGAACTCAACCTCATCAACTGTTTTGATTCAAACAACACATCAGGAAACTCTTCATCAGAGACTTCCAGTCCCAAAGGTACTACCACTACTGATTTCGAGCCAAGGGTTTTCTCCTGCAATTATTGCCAGAGAAAATTTTACAGTTCACAAGCGCTCGGAGGGCACCAAAATGCTCATAAGAGAGAGAGAACACTTGCCAAAAAAGGGCTCAAGGGTAATTGTGCTGCAGCAGAAGCAGATGCCTTTGATAGGCTGCCAAGTTTACTCTCCACATACAGATTCTCCAGCATGGCATCTCTCCCTTTGCATGGGTCCTTCAATAATAGGTCACTTGGCATACAAGTGCATTCCACAATTCACAAGCCTTGTTACCAAACAAACACCATTGGAGGACATAATGGTAATAGTGGGTGGCTGAGACGACCTATTGATCAACAACCTGCGATCGGGCGGCTTGTTCCACCTAACAATGTTTTTCATGTGCAGGGTGGCGGCATAGGATCCTCCTCCTCCTCATCGAGTGGCGGTGTTGGAAGGTTTTCCTATAGTACTAATGTTCGGAAGTTTTCTCCAGAGACGGAAGGAATTGGAGGATTATGGTGGAGTAATAGTAGTATTGGCCATTTTAATACTAAGCAAGATGACTTGCAGAAGCTTGACTTGTCCCTCAAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

29.34

Weight (kDa)

8.98

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80730
fragaria_vesca	FvH4_6g28840
malus_domestica	MD09G1224100.v1.1 MD17G1221300.v1.1
prunus_persica	Prupe.3G096400_v2.0.a1
pyrus_communis	pycom17g22570
rosa_chinensis	RchiOBHm_Chr2g0133371
rosa_laevigata	RLG00000019327
rosa_multiflora	Rmu_sc0003874.1_g000010 Rmu_sc0038578.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111220
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363800 Rh2BG369700 Rh2CG347000 Rh2DG386500
rosa_wichuraiana	Rw2G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	580
AccB1I	GGYRCC	1 cut(s)	294
AciI	CCGC	3 cut(s)	583, 624, 657
AclWI	GGATC	2 cut(s)	627, 640
AcoI	YGGCCR	1 cut(s)	751
AcsI	RAATTY	1 cut(s)	266
AfaI	GTAC	2 cut(s)	211, 682
AfeI	AGCGCT	1 cut(s)	285
AfiI	CCNNNNNNNGG	5 cut(s)	120, 336, 381, 440, 578
AgsI	TTSAA	2 cut(s)	162, 451
AhdI	GACNNNNNGTC	1 cut(s)	198
AhlI	ACTAGT	1 cut(s)	31
AluBI	AGCT	4 cut(s)	65, 130, 787, 805
AluI	AGCT	4 cut(s)	65, 130, 787, 805
Alw26I	GTCTC	3 cut(s)	185, 544, 701
AlwI	GGATC	2 cut(s)	627, 640
Aor51HI	AGCGCT	1 cut(s)	285
AoxI	GGCC	1 cut(s)	751
ApeKI	GCWGC	3 cut(s)	356, 359, 385
ApoI	RAATTY	1 cut(s)	266
Asp700I	GAANNNNTTC	2 cut(s)	181, 670
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	444
BaeGI	GKGCMC	1 cut(s)	297
BalI	TGGCCA	1 cut(s)	753
BamHI	GGATCC	1 cut(s)	632
BanI	GGYRCC	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	342
BbvI	GCAGC	3 cut(s)	343, 371, 372
BclI	TGATCA	1 cut(s)	562
BcoDI	GTCTC	3 cut(s)	185, 544, 701
BcuI	ACTAGT	1 cut(s)	31
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	2 cut(s)	357, 676
BfoI	RGCGCY	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	580
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	5 cut(s)	357, 360, 386, 584, 625
BlsI	GCNGC	5 cut(s)	358, 361, 387, 585, 626
BmcAI	AGTACT	1 cut(s)	682
Bme18I	GGWCC	1 cut(s)	444
BmeRI	GACNNNNNGTC	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	444
BmiI	GGNNCC	3 cut(s)	296, 445, 634
BmsI	GCATC	2 cut(s)	361, 434
BpmI	CTGGAG	2 cut(s)	400, 687
BpuEI	CTTGAG	3 cut(s)	45, 326, 785
BsaJI	CCNNGG	1 cut(s)	233
BsaXI	ACNNNNNCTCC	4 cut(s)	398, 428, 727, 757
Bsc4I	CCNNNNNNNGG	5 cut(s)	120, 336, 381, 440, 578
Bse1I	ACTGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	233
BseLI	CCNNNNNNNGG	5 cut(s)	120, 336, 381, 440, 578
BseMII	CTCAG	1 cut(s)	539
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	3 cut(s)	628, 631, 634
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	3 cut(s)	343, 371, 372
BsgI	GTGCAG	1 cut(s)	635
Bsh1285I	CGRYCG	1 cut(s)	579
BshFI	GGCC	1 cut(s)	753
BshNI	GGYRCC	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	579
BslFI	GGGAC	2 cut(s)	186, 781
BslI	CCNNNNNNNGG	5 cut(s)	120, 336, 381, 440, 578
BsmAI	GTCTC	3 cut(s)	185, 544, 701
BsmBI	CGTCTC	2 cut(s)	544, 701
BsmFI	GGGAC	2 cut(s)	186, 781
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	753
Bsp1286I	GDGCHC	2 cut(s)	297, 342
Bsp143I	GATC	5 cut(s)	40, 88, 562, 576, 632
BspACI	CCGC	3 cut(s)	583, 624, 657
BspANI	GGCC	1 cut(s)	753
BspCNI	CTCAG	1 cut(s)	540
BspLI	GGNNCC	3 cut(s)	296, 445, 634
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	2 cut(s)	627, 640
BspT107I	GGYRCC	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	5 cut(s)	40, 88, 562, 576, 632
BssT1I	CCWWGG	1 cut(s)	233
Bst4CI	ACNGT	2 cut(s)	152, 275
Bst6I	CTCTTC	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	255
BstDEI	CTNAG	3 cut(s)	92, 548, 765
BstENI	CCTNNNNNAGG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	5 cut(s)	43, 91, 565, 579, 635
BstMAI	GTCTC	3 cut(s)	185, 544, 701
BstMBI	GATC	5 cut(s)	40, 88, 562, 576, 632
BstMCI	CGRYCG	1 cut(s)	579
BstMWI	GCNNNNNNNGC	3 cut(s)	255, 292, 365
BstSFI	CTRYAG	2 cut(s)	357, 676
BstSLI	GKGCMC	1 cut(s)	297
BstV1I	GCAGC	3 cut(s)	343, 371, 372
BstX2I	RGATCY	2 cut(s)	88, 632
BstYI	RGATCY	2 cut(s)	88, 632
BsuRI	GGCC	1 cut(s)	753
BveI	ACCTGC	1 cut(s)	580
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	210, 681
CviAII	CATG	3 cut(s)	421, 440, 611
CviQI	GTAC	2 cut(s)	210, 681
DdeI	CTNAG	3 cut(s)	92, 548, 765
DpnI	GATC	5 cut(s)	42, 90, 564, 578, 634
DpnII	GATC	5 cut(s)	40, 88, 562, 576, 632
DriI	GACNNNNNGTC	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	751
Eam1104I	CTCTTC	1 cut(s)	187
Eam1105I	GACNNNNNGTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	444
Eco47III	AGCGCT	1 cut(s)	285
EcoNI	CCTNNNNNAGG	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	444
EcoT14I	CCWWGG	1 cut(s)	233
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	233
Esp3I	CGTCTC	2 cut(s)	544, 701
FaeI	CATG	3 cut(s)	424, 443, 614
FalI	AAGNNNNNCTT	2 cut(s)	776, 808
FaqI	GGGAC	2 cut(s)	186, 781
FatI	CATG	3 cut(s)	420, 439, 610
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	5 cut(s)	357, 360, 386, 584, 625
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	5 cut(s)	357, 360, 386, 584, 625
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	5 cut(s)	357, 360, 386, 584, 625
GsuI	CTGGAG	2 cut(s)	400, 687
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	753
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	3 cut(s)	424, 443, 614
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	3 cut(s)	110, 158, 411
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	2 cut(s)	278, 395
Hpy188I	TCNGA	3 cut(s)	190, 290, 693
Hpy188III	TCNNGA	2 cut(s)	174, 704
Hpy8I	GTNNAC	2 cut(s)	278, 395
HpyAV	CCTTC	3 cut(s)	457, 660, 707
HpyCH4III	ACNGT	2 cut(s)	152, 275
HpyCH4V	TGCA	7 cut(s)	37, 249, 359, 439, 478, 616, 781
HpyF10VI	GCNNNNNNNGC	3 cut(s)	255, 292, 365
HpyF3I	CTNAG	3 cut(s)	92, 548, 765
Hsp92II	CATG	3 cut(s)	424, 443, 614
HspAI	GCGC	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	5 cut(s)	40, 88, 562, 576, 632
LpnPI	CCDG	9 cut(s)	116, 159, 211, 259, 272, 430, 585, 602, 717
Lsp1109I	GCAGC	3 cut(s)	343, 371, 372
LweI	GCATC	2 cut(s)	361, 434
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	459, 500
MalI	GATC	5 cut(s)	42, 90, 564, 578, 634
MboI	GATC	5 cut(s)	40, 88, 562, 576, 632
MboII	GAAGA	2 cut(s)	71, 174
MflI	RGATCY	2 cut(s)	88, 632
MhlI	GDGCHC	2 cut(s)	297, 342
MlsI	TGGCCA	1 cut(s)	753
MluCI	AATT	5 cut(s)	250, 266, 349, 486, 717
MluNI	TGGCCA	1 cut(s)	753
MmeI	TCCRAC	1 cut(s)	643
Mox20I	TGGCCA	1 cut(s)	753
MroXI	GAANNNNTTC	2 cut(s)	181, 670
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	1 cut(s)	759
MslI	CAYNNNNRTG	2 cut(s)	300, 473
Msp20I	TGGCCA	1 cut(s)	753
Mva1269I	GAATGC	1 cut(s)	478
MwoI	GCNNNNNNNGC	3 cut(s)	255, 292, 365
NdeII	GATC	5 cut(s)	40, 88, 562, 576, 632
NlaIII	CATG	3 cut(s)	424, 443, 614
NlaIV	GGNNCC	3 cut(s)	296, 445, 634
NmuCI	GTSAC	1 cut(s)	459
PctI	GAATGC	1 cut(s)	478
PdmI	GAANNNNTTC	2 cut(s)	181, 670
PfeI	GAWTC	3 cut(s)	110, 158, 411
PkrI	GCNGC	5 cut(s)	358, 361, 387, 585, 626
Ple19I	CGATCG	1 cut(s)	579
PpuMI	RGGWCCY	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	444
PspN4I	GGNNCC	3 cut(s)	296, 445, 634
PspPI	GGNCC	1 cut(s)	444
PspPPI	RGGWCCY	1 cut(s)	444
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	2 cut(s)	88, 632
PvuI	CGATCG	1 cut(s)	579
RsaI	GTAC	2 cut(s)	211, 682
RsaNI	GTAC	2 cut(s)	210, 681
RseI	CAYNNNNRTG	2 cut(s)	300, 473
SaqAI	TTAA	1 cut(s)	759
SatI	GCNGC	5 cut(s)	357, 360, 386, 584, 625
Sau3AI	GATC	5 cut(s)	40, 88, 562, 576, 632
Sau96I	GGNCC	1 cut(s)	444
ScaI	AGTACT	1 cut(s)	682
SduI	GDGCHC	2 cut(s)	297, 342
SfaNI	GCATC	2 cut(s)	361, 434
SfcI	CTRYAG	2 cut(s)	357, 676
SinI	GGWCC	1 cut(s)	444
SmiMI	CAYNNNNRTG	2 cut(s)	300, 473
SmlI	CTYRAG	3 cut(s)	60, 341, 800
SmoI	CTYRAG	3 cut(s)	60, 341, 800
SpeI	ACTAGT	1 cut(s)	31
Sse9I	AATT	5 cut(s)	250, 266, 349, 486, 717
SsiI	CCGC	3 cut(s)	583, 624, 657
SspMI	CTAG	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	233
TaaI	ACNGT	2 cut(s)	152, 275
TaqI	TCGA	2 cut(s)	228, 650
TasI	AATT	5 cut(s)	250, 266, 349, 486, 717
TatI	WGTACW	1 cut(s)	680
TauI	GCSGC	2 cut(s)	586, 627
TfiI	GAWTC	3 cut(s)	110, 158, 411
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TseFI	GTSAC	1 cut(s)	459
TseI	GCWGC	3 cut(s)	356, 359, 385
Tsp45I	GTSAC	1 cut(s)	459
TspDTI	ATGAA	2 cut(s)	174, 599
TspGWI	ACGGA	1 cut(s)	725
VpaK11BI	GGWCC	1 cut(s)	444
XagI	CCTNNNNNAGG	1 cut(s)	379
XapI	RAATTY	1 cut(s)	266
XmnI	GAANNNNTTC	2 cut(s)	181, 670
XspI	CTAG	1 cut(s)	32
ZrmI	AGTACT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.