Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015389

Physical Location & Seq

Genomic Coordinates Forward (+)

30348670 .. 30350564

Gene Structure 1895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTGAGGAAGAAGCTAAGGGTTTGGATTACATACCGGAGATAGTACTGAAGAAGAGGAAGAACAGAGATGAGCTTGCCTTTATCAGGAAGAAGCAACTTGAGTTGGGTAATTCCGGCAAGAAGAAGAAGAAAGTCTCTGATATCAAACGTCCTGAAGATTTTGTTCATGAGTTCAGGGCTAAGGAAGTAGATATGATCCGGATGAAGCAAAGAGTAAAGAGGCCAAAGTCATCTCCTCCACCAGTTAAATCTGACCTGGTTTTCATCATACGCATTCAAGGCAAGAATGATATGCACCCAAAGACCAAGAGGATTCTTAACAATTTGCAACTAAAGAGCGTCTTTACTGGTGTATTTGCTAAAGCAACTGACAGTTTGTTCCAAAAGCTTCTCAAAGTGCAGCCTTATGTCACTTATGGATACCCGAATGATAAGAGTGTTAAGGACCTTATATACAAAAAGGGATGCACAATCATTGAGGGAAATCCTGTTCCTCTTACCGACAACAATATAATCGAACAGGCTCTAGGAGAACACAAAATCTTGGGCATAGAAGACCTTGTGAATGAGATAGCAAGAGTCGGAGATCATTTCAGAGAAGTTATGAGATTCTTGGGACCCTTGAAACTCAACAAGCCTGTGGCTGATGTTTTGCACCGGAAGAAACAAGTTTTCAGCGAAGGAGGAGATACCGGAAACCGCGAAGATAAGATCAATGATCTCATCAGCAAAATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

247

Amino Acids

28.34

Weight (kDa)

9.73

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	12 - 77	5e-09	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	88 - 138	9.1e-10	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80750
fragaria_vesca	FvH4_6g28820
malus_domestica	MD00G1084000.v1.1 MD17G1221600.v1.1
prunus_persica	Prupe.3G096800_v2.0.a1
pyrus_communis	pycom09g14210
rosa_chinensis	RchiOBHm_Chr2g0133291 RchiOBHm_Chr2g0133351
rosa_multiflora	Rmu_sc0003874.1_g000013
rosa_roxburghii	Rroxscaffold_2G00111240
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363600 Rh2BG369300 Rh2CG346800 Rh2DG386300
rosa_wichuraiana	Rw2G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	705
AccIII	TCCGGA	1 cut(s)	201
AciI	CCGC	1 cut(s)	703
AclWI	GGATC	1 cut(s)	193
AcuI	CTGAAG	2 cut(s)	71, 177
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	281, 628
AjnI	CCWGG	1 cut(s)	258
AloI	GAACNNNNNNTCC	2 cut(s)	477, 509
AluBI	AGCT	3 cut(s)	17, 76, 391
AluI	AGCT	3 cut(s)	17, 76, 391
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	193
Aor13HI	TCCGGA	1 cut(s)	201
AoxI	GGCC	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	403
AspS9I	GGNCC	2 cut(s)	448, 620
AvaII	GGWCC	2 cut(s)	448, 620
BbsI	GAAGAC	1 cut(s)	564
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	415
BciT130I	CCWGG	1 cut(s)	260
BciVI	GTATCC	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	530
BfuI	GTATCC	1 cut(s)	416
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
BmcAI	AGTACT	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	2 cut(s)	448, 620
BmgT120I	GGNCC	2 cut(s)	448, 620
BmiI	GGNNCC	2 cut(s)	621, 622
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	564
Bpu10I	CCTNAGC	3 cut(s)	6, 18, 183
BpuEI	CTTGAG	1 cut(s)	122
BsaWI	WCCGGW	4 cut(s)	37, 201, 660, 695
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	2 cut(s)	245, 355
BseAI	TCCGGA	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	260
BseGI	GGATG	2 cut(s)	210, 473
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseNI	ACTGG	2 cut(s)	245, 355
BseRI	GAGGAG	2 cut(s)	228, 702
BseXI	GCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	1 cut(s)	705
BshFI	GGCC	1 cut(s)	226
BsiSI	CCGG	5 cut(s)	38, 117, 202, 661, 696
BslFI	GGGAC	1 cut(s)	633
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	633
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	226
Bsp13I	TCCGGA	1 cut(s)	201
Bsp143I	GATC	4 cut(s)	198, 589, 714, 721
BspACI	CCGC	1 cut(s)	703
BspANI	GGCC	1 cut(s)	226
BspEI	TCCGGA	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	705
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	621, 622
BspPI	GGATC	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	245, 355
BssMI	GATC	4 cut(s)	198, 589, 714, 721
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	6, 18, 183
BstENI	CCTNNNNNAGG	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	210, 473
BstFNI	CGCG	1 cut(s)	705
BstKTI	GATC	4 cut(s)	201, 592, 717, 724
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	4 cut(s)	198, 589, 714, 721
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstUI	CGCG	1 cut(s)	705
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	210, 473
Cac8I	GCNNGC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	448, 620
CseI	GACGC	1 cut(s)	331
CsiI	ACCWGGT	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	1 cut(s)	170
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	3 cut(s)	6, 18, 183
DpnI	GATC	4 cut(s)	200, 591, 716, 723
DpnII	GATC	4 cut(s)	198, 589, 714, 721
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	145
Eco47I	GGWCC	2 cut(s)	448, 620
Eco57I	CTGAAG	2 cut(s)	71, 177
EcoNI	CCTNNNNNAGG	1 cut(s)	85
EcoO109I	RGGNCCY	2 cut(s)	448, 620
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	145
FaeI	CATG	1 cut(s)	173
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	2 cut(s)	217, 480
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	1 cut(s)	530
GluI	GCNGC	1 cut(s)	404
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	5 cut(s)	38, 117, 202, 661, 696
HgaI	GACGC	1 cut(s)	331
Hin1II	CATG	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	3 cut(s)	316, 582, 612
HpaII	CCGG	5 cut(s)	38, 117, 202, 661, 696
Hpy188I	TCNGA	4 cut(s)	142, 256, 587, 599
Hpy188III	TCNNGA	4 cut(s)	88, 155, 170, 202
HpyAV	CCTTC	1 cut(s)	677
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	5 cut(s)	298, 331, 403, 471, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	3 cut(s)	6, 18, 183
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	1 cut(s)	173
KflI	GGGWCCC	1 cut(s)	620
Kpn2I	TCCGGA	1 cut(s)	201
Kzo9I	GATC	4 cut(s)	198, 589, 714, 721
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	1 cut(s)	458
MabI	ACCWGGT	1 cut(s)	258
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	4 cut(s)	200, 591, 716, 723
MboI	GATC	4 cut(s)	198, 589, 714, 721
MluCI	AATT	3 cut(s)	112, 325, 739
MlyI	GAGTC	1 cut(s)	591
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	7 cut(s)	51, 216, 249, 306, 475, 507, 680
MroI	TCCGGA	1 cut(s)	201
MseI	TTAA	3 cut(s)	249, 321, 444
MspI	CCGG	5 cut(s)	38, 117, 202, 661, 696
MspR9I	CCNGG	1 cut(s)	260
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	705
MwoI	GCNNNNNNNGC	1 cut(s)	282
NdeII	GATC	4 cut(s)	198, 589, 714, 721
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	2 cut(s)	621, 622
NmuCI	GTSAC	1 cut(s)	412
PagI	TCATGA	1 cut(s)	169
PctI	GAATGC	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	316, 612
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
PpuMI	RGGWCCY	2 cut(s)	448, 620
Psp5II	RGGWCCY	2 cut(s)	448, 620
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	621, 622
PspPI	GGNCC	2 cut(s)	448, 620
PspPPI	RGGWCCY	2 cut(s)	448, 620
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	249, 321, 444
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	4 cut(s)	198, 589, 714, 721
Sau96I	GGNCC	2 cut(s)	448, 620
ScaI	AGTACT	1 cut(s)	48
SchI	GAGTC	1 cut(s)	591
ScrFI	CCNGG	1 cut(s)	260
SetI	ASST	7 cut(s)	19, 78, 154, 261, 393, 453, 564
SexAI	ACCWGGT	1 cut(s)	258
SfaNI	GCATC	1 cut(s)	458
SinI	GGWCC	2 cut(s)	448, 620
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	3 cut(s)	112, 325, 739
SsiI	CCGC	1 cut(s)	703
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	519
TasI	AATT	3 cut(s)	112, 325, 739
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	316, 612
Tru1I	TTAA	3 cut(s)	249, 321, 444
Tru9I	TTAA	3 cut(s)	249, 321, 444
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	3 cut(s)	158, 221, 256
VpaK11BI	GGWCC	2 cut(s)	448, 620
XagI	CCTNNNNNAGG	1 cut(s)	85
XspI	CTAG	1 cut(s)	530
ZrmI	AGTACT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.