Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003874.1

Orthogroup ID

OG0015389

Physical Location & Seq

Genomic Coordinates Forward (+)

55307 .. 61172

Gene Structure 5866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003874.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

atgattgcttggtgggctcttcccgactcgattcgttctctttcaggcgatgtgatgctcgatggtgcaatggttcgggtcgataggttggctcaagcatcccatactgtaaaagaaaggggagagatgagtgaagaggtggcgcagccgttggcaaccgtgccggagataatattgaagaagaggaaaagtaatgaggaattggctttgaggaggaaggagcaattggagcagaggaagtttcgccttaacaagaacaagcaagagtttatcaagaaacctgaggactttgtcaaagagtttcgctacagggaggtggaccttgtccaaatgaaacacaggttgaagagaaagaggcctgcattagagacaacgaacccccagcttcttttggtcattcgcatacaggggaaaaatgacatgcatcctgctgttaggaagaacttatacagcctaaacttgaggaaaatcttcaatgctgttttcgtgagagcagatgaagcaatgttagaaaagttgcagagggtggagccttatgttacctatgggtatcctagccttaagaatgtgaaggagttgatttacaagaaaggttatgcaaagataggcaagcaaagagttcctttgacggacaacaacttgattgaagaggcactggggaagtctaatatcatatgcatagaagatatagtgcatgaaattgcttctactggtaaatattttaaggaggctgccagctttctatggccctttacactcaacaagccagaagtaggattgaaaggagtaaaagcacgttacctagatggtggagactctgtcggatcagaaggcatatgtgaatgtcctatgccttcagccacggcgattttgcttgttggagcttcgtttcaagtggggactgtggctggtgcaacaagggatcgattgccctttttggtggtttgcccctttgattgccctttttggtggtttggccttttgattgttttgtggtttggctacctaccttgtgagggatttagagaaataggattcgaccctcggaaatcgagctgtgactgctttgcgggcattgtctgggaaggaggagcgtggaatcgaaatcaagcggctttgaggaggtggggacagtctgacatggatattgttcatgccttcaggttgcatccactgtgcatggctacatcggagaagaaaatattgcaagcaatgggcttgttagtgaacaatgggcttgttagtgaacaagatggggtggcgggcggaacagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

425

Amino Acids

48.15

Weight (kDa)

9.11

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80750
fragaria_vesca	FvH4_6g28820
malus_domestica	MD00G1084000.v1.1 MD17G1221600.v1.1
prunus_persica	Prupe.3G096800_v2.0.a1
pyrus_communis	pycom09g14210
rosa_chinensis	RchiOBHm_Chr2g0133291 RchiOBHm_Chr2g0133351
rosa_multiflora	Rmu_sc0003874.1_g000013
rosa_roxburghii	Rroxscaffold_2G00111240
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363600 Rh2BG369300 Rh2CG346800 Rh2DG386300
rosa_wichuraiana	Rw2G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	1070, 1112, 1262, 1266
AclWI	GGATC	2 cut(s)	832, 930
AcuI	CTGAAG	2 cut(s)	840, 1144
AfiI	CCNNNNNNNGG	2 cut(s)	773, 1016
AflII	CTTAAG	1 cut(s)	560
AgsI	TTSAA	6 cut(s)	178, 346, 475, 647, 781, 893
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	4 cut(s)	385, 738, 884, 1056
AluI	AGCT	4 cut(s)	385, 738, 884, 1056
Alw26I	GTCTC	2 cut(s)	362, 807
AlwI	GGATC	2 cut(s)	832, 930
AoxI	GGCC	3 cut(s)	356, 746, 976
ApeKI	GCWGC	2 cut(s)	145, 731
Asp700I	GAANNNNTTC	1 cut(s)	470
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	319, 747
AvaII	GGWCC	1 cut(s)	319
AxyI	CCTNAGG	1 cut(s)	282
BanII	GRGCYC	1 cut(s)	19
BarI	GAAGNNNNNNTAC	2 cut(s)	431, 463
BbvI	GCAGC	2 cut(s)	157, 718
BccI	CCATC	3 cut(s)	56, 800, 1247
BceAI	ACGGC	2 cut(s)	133, 879
BciVI	GTATCC	1 cut(s)	561
BcoDI	GTCTC	2 cut(s)	362, 807
BfaI	CTAG	2 cut(s)	555, 803
BfmI	CTRYAG	1 cut(s)	307
BfrI	CTTAAG	1 cut(s)	560
BfuI	GTATCC	1 cut(s)	561
BisI	GCNGC	3 cut(s)	146, 732, 1113
BlsI	GCNGC	3 cut(s)	147, 733, 1114
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	319, 747
BmiI	GGNNCC	1 cut(s)	531
BmrI	ACTGGG	1 cut(s)	665
BmsI	GCATC	4 cut(s)	45, 107, 433, 1177
BmuI	ACTGGG	1 cut(s)	665
BpuEI	CTTGAG	2 cut(s)	78, 481
Bsa29I	ATCGAT	1 cut(s)	925
BsaJI	CCNNGG	2 cut(s)	861, 1043
BsaXI	ACNNNNNCTCC	2 cut(s)	804, 834
Bsc4I	CCNNNNNNNGG	2 cut(s)	773, 1016
Bse1I	ACTGG	2 cut(s)	660, 715
Bse21I	CCTNAGG	1 cut(s)	282
Bse3DI	GCAATG	3 cut(s)	75, 510, 1218
BseCI	ATCGAT	1 cut(s)	925
BseDI	CCNNGG	2 cut(s)	861, 1043
BseGI	GGATG	3 cut(s)	98, 424, 1168
BseLI	CCNNNNNNNGG	2 cut(s)	773, 1016
BseMI	GCAATG	3 cut(s)	75, 510, 1218
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	660, 715
BseRI	GAGGAG	3 cut(s)	226, 1104, 1135
BseXI	GCAGC	2 cut(s)	157, 718
BseYI	CCCAGC	1 cut(s)	381
BshFI	GGCC	3 cut(s)	358, 748, 978
BshVI	ATCGAT	1 cut(s)	925
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	2 cut(s)	913, 1143
BslI	CCNNNNNNNGG	2 cut(s)	773, 1016
BsmAI	GTCTC	2 cut(s)	362, 807
BsmFI	GGGAC	2 cut(s)	913, 1143
BsnI	GGCC	3 cut(s)	358, 748, 978
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	824, 922
BspACI	CCGC	4 cut(s)	1070, 1112, 1262, 1266
BspANI	GGCC	3 cut(s)	358, 748, 978
BspCNI	CTCAG	1 cut(s)	274
BspDI	ATCGAT	1 cut(s)	925
BspLI	GGNNCC	1 cut(s)	531
BspPI	GGATC	2 cut(s)	832, 930
BspQI	GCTCTTC	1 cut(s)	24
BspTI	CTTAAG	1 cut(s)	560
BsrDI	GCAATG	3 cut(s)	75, 510, 1218
BsrI	ACTGG	2 cut(s)	660, 715
BssECI	CCNNGG	2 cut(s)	861, 1043
BssMI	GATC	2 cut(s)	824, 922
Bst4CI	ACNGT	5 cut(s)	109, 160, 904, 1134, 1176
Bst6I	CTCTTC	5 cut(s)	24, 129, 176, 341, 642
BstAFI	CTTAAG	1 cut(s)	560
BstC8I	GCNNGC	6 cut(s)	360, 611, 736, 1072, 1209, 1264
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	861
BstF5I	GGATG	3 cut(s)	98, 424, 1168
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	2 cut(s)	827, 925
BstMAI	GTCTC	2 cut(s)	362, 807
BstMBI	GATC	2 cut(s)	824, 922
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 229, 500, 1062, 1071
BstNSI	RCATGY	1 cut(s)	424
BstSFI	CTRYAG	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	157, 718
Bsu15I	ATCGAT	1 cut(s)	925
Bsu36I	CCTNAGG	1 cut(s)	282
BsuI	GTATCC	1 cut(s)	561
BsuRI	GGCC	3 cut(s)	358, 748, 978
BsuTUI	ATCGAT	1 cut(s)	925
BtgI	CCRYGG	1 cut(s)	861
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	98, 424, 1168
BtsIMutI	CAGTG	2 cut(s)	653, 1172
Cac8I	GCNNGC	6 cut(s)	360, 611, 736, 1072, 1209, 1264
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	2 cut(s)	319, 747
ClaI	ATCGAT	1 cut(s)	925
CviAII	CATG	5 cut(s)	421, 695, 1141, 1154, 1180
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	2 cut(s)	826, 924
DpnII	GATC	2 cut(s)	824, 922
Eam1104I	CTCTTC	5 cut(s)	24, 129, 176, 341, 642
EarI	CTCTTC	5 cut(s)	24, 129, 176, 341, 642
Eco147I	AGGCCT	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	319
Eco57I	CTGAAG	2 cut(s)	840, 1144
Eco81I	CCTNAGG	1 cut(s)	282
EcoT22I	ATGCAT	2 cut(s)	426, 680
EcoT38I	GRGCYC	1 cut(s)	19
FaeI	CATG	5 cut(s)	424, 698, 1144, 1157, 1183
FalI	AAGNNNNNCTT	2 cut(s)	607, 639
FaqI	GGGAC	2 cut(s)	913, 1143
FatI	CATG	5 cut(s)	420, 694, 1140, 1153, 1179
FauI	CCCGC	2 cut(s)	1063, 1255
FauNDI	CATATG	2 cut(s)	674, 836
Fnu4HI	GCNGC	3 cut(s)	146, 732, 1113
FokI	GGATG	3 cut(s)	85, 411, 1155
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	3 cut(s)	146, 732, 1113
FspBI	CTAG	2 cut(s)	555, 803
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	3 cut(s)	146, 732, 1113
GsaI	CCCAGC	1 cut(s)	385
HaeIII	GGCC	3 cut(s)	358, 748, 978
HapII	CCGG	1 cut(s)	164
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	5 cut(s)	424, 698, 1144, 1157, 1183
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	5 cut(s)	26, 31, 815, 1035, 1099
HpaII	CCGG	1 cut(s)	164
Hpy166II	GTNNAC	3 cut(s)	319, 1228, 1247
Hpy188I	TCNGA	5 cut(s)	824, 829, 1047, 1138, 1192
Hpy188III	TCNNGA	3 cut(s)	23, 274, 487
Hpy8I	GTNNAC	3 cut(s)	319, 1228, 1247
HpyAV	CCTTC	6 cut(s)	211, 565, 824, 864, 1079, 1168
HpyCH4III	ACNGT	5 cut(s)	109, 160, 904, 1134, 1176
HpyCH4IV	ACGT	1 cut(s)	796
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 229, 500, 1062, 1071
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	796
Hsp92II	CATG	5 cut(s)	424, 698, 1144, 1157, 1183
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	824, 922
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	5 cut(s)	220, 229, 529, 881, 1091
Lsp1109I	GCAGC	2 cut(s)	157, 718
LweI	GCATC	4 cut(s)	45, 107, 433, 1177
MaeI	CTAG	2 cut(s)	555, 803
MaeII	ACGT	1 cut(s)	796
MaeIII	GTNAC	3 cut(s)	538, 797, 1058
MalI	GATC	2 cut(s)	826, 924
MboI	GATC	2 cut(s)	824, 922
MfeI	CAATTG	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	3 cut(s)	200, 224, 699
MlyI	GAGTC	2 cut(s)	20, 809
MmeI	TCCRAC	2 cut(s)	802, 859
Mph1103I	ATGCAT	2 cut(s)	426, 680
MroXI	GAANNNNTTC	1 cut(s)	470
MseI	TTAA	4 cut(s)	249, 561, 723, 1276
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	1 cut(s)	164
MunI	CAATTG	1 cut(s)	224
MwoI	GCNNNNNNNGC	5 cut(s)	14, 229, 500, 1062, 1071
NdeI	CATATG	2 cut(s)	674, 836
NdeII	GATC	2 cut(s)	824, 922
NlaIII	CATG	5 cut(s)	424, 698, 1144, 1157, 1183
NlaIV	GGNNCC	1 cut(s)	531
NmuCI	GTSAC	1 cut(s)	1058
NsiI	ATGCAT	2 cut(s)	426, 680
NspI	RCATGY	1 cut(s)	424
PceI	AGGCCT	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	470
PfeI	GAWTC	3 cut(s)	31, 1035, 1099
PflFI	GACNNNGTC	3 cut(s)	290, 323, 818
PkrI	GCNGC	3 cut(s)	147, 733, 1114
PleI	GAGTC	2 cut(s)	20, 809
PpsI	GAGTC	2 cut(s)	20, 809
PspFI	CCCAGC	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	2 cut(s)	319, 747
PsyI	GACNNNGTC	3 cut(s)	290, 323, 818
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	4 cut(s)	249, 561, 723, 1276
SatI	GCNGC	3 cut(s)	146, 732, 1113
Sau3AI	GATC	2 cut(s)	824, 922
Sau96I	GGNCC	2 cut(s)	319, 747
SchI	GAGTC	2 cut(s)	20, 809
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	4 cut(s)	45, 107, 433, 1177
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	319
SmlI	CTYRAG	3 cut(s)	93, 460, 560
SmoI	CTYRAG	3 cut(s)	93, 460, 560
Sse9I	AATT	3 cut(s)	200, 224, 699
SseBI	AGGCCT	1 cut(s)	358
SsiI	CCGC	4 cut(s)	1070, 1112, 1262, 1266
SspI	AATATT	3 cut(s)	174, 719, 1203
SspMI	CTAG	2 cut(s)	555, 803
StuI	AGGCCT	1 cut(s)	358
TaaI	ACNGT	5 cut(s)	109, 160, 904, 1134, 1176
TaiI	ACGT	1 cut(s)	799
TaqI	TCGA	7 cut(s)	29, 60, 81, 925, 1038, 1052, 1102
TasI	AATT	3 cut(s)	200, 224, 699
TauI	GCSGC	1 cut(s)	1115
TfiI	GAWTC	3 cut(s)	31, 1035, 1099
Tru1I	TTAA	4 cut(s)	249, 561, 723, 1276
Tru9I	TTAA	4 cut(s)	249, 561, 723, 1276
TscAI	CASTG	2 cut(s)	660, 1179
TseFI	GTSAC	1 cut(s)	1058
TseI	GCWGC	2 cut(s)	145, 731
Tsp45I	GTSAC	1 cut(s)	1058
TspDTI	ATGAA	4 cut(s)	347, 513, 711, 1142
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	2 cut(s)	660, 1179
Tth111I	GACNNNGTC	3 cut(s)	290, 323, 818
Vha464I	CTTAAG	1 cut(s)	560
VpaK11BI	GGWCC	1 cut(s)	319
XceI	RCATGY	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	470
XspI	CTAG	2 cut(s)	555, 803
Zsp2I	ATGCAT	2 cut(s)	426, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.