Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015389

Physical Location & Seq

Genomic Coordinates Reverse (-)

22244440 .. 22247567

Gene Structure 3128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGTGGAGAGGTGGCGCAGCCGTTGACGACCGTGCCGGAGATTATATTGAAGAAGAGGAAAAGTAATGAGGAATTGGCATTGAGGAGGAGGGAGCAACTGGAGCAGAGGAATTTTCGGCAGAACAAGAGTAAGCAGGAGTTTATCAAGAAACCTGAGGACTTTGTCAAGGAGTTTCGCTACCGGGAGGTGGACCTTGTCCAAATGAAAAACAGGTTAAAGAGAAAGAGGTCAGCAATAGAGACAACTAACCCCCAGCTTCTCTTGGTCATTCGCATACAGGGGAAAAATGACATGCATCCTGCTGTTAGGAAGAACTTATACAGCTTAAACTTGAGGAGAATCTTCAATGCTGTTTTCGTGAGAGCAGACGAAGCAATGCTAGAAAAGTTGCAGAGGGTTGAGCCTTATGTTACCTATGGGTATCCTAACCTTAAGAATGTGAAGGAGTTGATTTACAAGAAAGGATATGCAAAGATAAACAAGCAAAGAGTTCCCCTGACAGACAATAACTTGATTGAAGAGGCACTGGCAAAGTATAATATCATATGCATAGAAGACATAGTGCATGAAATTGCTTCTACTGGTAAATATTTCAAGGAGGCTGCTAGCTTTCTATGGCCCTTTACACTCAACAAGCCAGAAGTAGGATTGAAAGGAGTAAAGGCACGTTTCCAAGATGGTGGAGACACTGGTGATCGCGGCGATAAAATCAATGAACTGATTAGCAAGATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

247

Amino Acids

28.77

Weight (kDa)

9.79

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	12 - 77	4e-09	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	88 - 138	1.9e-12	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80750
fragaria_vesca	FvH4_6g28820
malus_domestica	MD00G1084000.v1.1 MD17G1221600.v1.1
prunus_persica	Prupe.3G096800_v2.0.a1
pyrus_communis	pycom09g14210
rosa_chinensis	RchiOBHm_Chr2g0133291 RchiOBHm_Chr2g0133351
rosa_multiflora	Rmu_sc0003874.1_g000013
rosa_roxburghii	Rroxscaffold_2G00111240
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363600 Rh2BG369300 Rh2CG346800 Rh2DG386300
rosa_wichuraiana	Rw2G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	702
AciI	CCGC	1 cut(s)	702
AcsI	RAATTY	1 cut(s)	112
AfiI	CCNNNNNNNGG	2 cut(s)	190, 647
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	5 cut(s)	52, 349, 521, 598, 655
AluBI	AGCT	3 cut(s)	259, 327, 612
AluI	AGCT	3 cut(s)	259, 327, 612
Alw26I	GTCTC	2 cut(s)	236, 681
AoxI	GGCC	1 cut(s)	620
ApeKI	GCWGC	2 cut(s)	19, 605
ApoI	RAATTY	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	193, 621
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	707
AsuNHI	GCTAGC	1 cut(s)	608
AvaII	GGWCC	1 cut(s)	193
AxyI	CCTNAGG	1 cut(s)	156
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BbsI	GAAGAC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	31, 592
BccI	CCATC	1 cut(s)	674
BceAI	ACGGC	1 cut(s)	7
BciVI	GTATCC	1 cut(s)	435
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	236, 681
BfaI	CTAG	2 cut(s)	383, 609
BfrI	CTTAAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	3 cut(s)	20, 606, 703
BlsI	GCNGC	3 cut(s)	21, 607, 704
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	193, 621
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	307
BmtI	GCTAGC	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	564
BpmI	CTGGAG	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	355
BpuMI	CCSGG	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 647
Bse1I	ACTGG	4 cut(s)	105, 534, 589, 697
Bse21I	CCTNAGG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	2 cut(s)	190, 647
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	4 cut(s)	105, 534, 589, 697
BseRI	GAGGAG	3 cut(s)	100, 103, 352
BseXI	GCAGC	2 cut(s)	31, 592
BseYI	CCCAGC	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	702
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	622
BsiEI	CGRYCG	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	38, 184
BslI	CCNNNNNNNGG	2 cut(s)	190, 647
BsmAI	GTCTC	2 cut(s)	236, 681
BsnI	GGCC	1 cut(s)	622
Bsp143I	GATC	1 cut(s)	697
BspACI	CCGC	1 cut(s)	702
BspANI	GGCC	1 cut(s)	622
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	702
BspOI	GCTAGC	1 cut(s)	612
BspTI	CTTAAG	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	4 cut(s)	105, 534, 589, 697
BssMI	GATC	1 cut(s)	697
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	2 cut(s)	50, 516
BstAFI	CTTAAG	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	298
BstFNI	CGCG	1 cut(s)	702
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	1 cut(s)	700
BstMAI	GTCTC	2 cut(s)	236, 681
BstMBI	GATC	1 cut(s)	697
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 374
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	183
BstUI	CGCG	1 cut(s)	702
BstV1I	GCAGC	2 cut(s)	31, 592
BstV2I	GAAGAC	1 cut(s)	564
BstXI	CCANNNNNNTGG	1 cut(s)	683
Bsu36I	CCTNAGG	1 cut(s)	156
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	622
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	527, 690
Cac8I	GCNNGC	1 cut(s)	610
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	193, 621
CviAII	CATG	2 cut(s)	295, 569
CviJI	RGCY	8 cut(s)	22, 259, 327, 406, 605, 612, 622, 640
CviKI_1	RGCY	8 cut(s)	22, 259, 327, 406, 605, 612, 622, 640
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	1 cut(s)	699
DpnII	GATC	1 cut(s)	697
Eam1104I	CTCTTC	2 cut(s)	50, 516
EarI	CTCTTC	2 cut(s)	50, 516
Eco47I	GGWCC	1 cut(s)	193
Eco81I	CCTNAGG	1 cut(s)	156
EcoT22I	ATGCAT	2 cut(s)	300, 554
FaeI	CATG	2 cut(s)	298, 572
FatI	CATG	2 cut(s)	294, 568
FauNDI	CATATG	1 cut(s)	548
Fnu4HI	GCNGC	3 cut(s)	20, 606, 703
FokI	GGATG	1 cut(s)	285
Fsp4HI	GCNGC	3 cut(s)	20, 606, 703
FspBI	CTAG	2 cut(s)	383, 609
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	3 cut(s)	20, 606, 703
GsaI	CCCAGC	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	622
HapII	CCGG	2 cut(s)	38, 184
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	298, 572
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	1 cut(s)	342
HpaII	CCGG	2 cut(s)	38, 184
HphI	GGTGA	1 cut(s)	707
Hpy166II	GTNNAC	2 cut(s)	27, 193
Hpy188III	TCNNGA	2 cut(s)	148, 361
Hpy8I	GTNNAC	2 cut(s)	27, 193
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	670
HpyCH4V	TGCA	5 cut(s)	298, 394, 473, 552, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 374
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	670
Hsp92II	CATG	2 cut(s)	298, 572
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	1 cut(s)	697
LmnI	GCTCC	2 cut(s)	94, 103
Lsp1109I	GCAGC	2 cut(s)	31, 592
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	383, 609
MaeII	ACGT	1 cut(s)	670
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	1 cut(s)	699
MboI	GATC	1 cut(s)	697
MboII	GAAGA	6 cut(s)	64, 67, 325, 337, 533, 569
MluCI	AATT	4 cut(s)	74, 112, 573, 736
Mph1103I	ATGCAT	2 cut(s)	300, 554
MseI	TTAA	3 cut(s)	218, 329, 435
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	2 cut(s)	38, 184
MspR9I	CCNGG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	702
MwoI	GCNNNNNNNGC	2 cut(s)	103, 374
NciI	CCSGG	1 cut(s)	185
NdeI	CATATG	1 cut(s)	548
NdeII	GATC	1 cut(s)	697
NheI	GCTAGC	1 cut(s)	608
NlaIII	CATG	2 cut(s)	298, 572
NsiI	ATGCAT	2 cut(s)	300, 554
NspI	RCATGY	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	342
PflFI	GACNNNGTC	2 cut(s)	164, 197
PkrI	GCNGC	3 cut(s)	21, 607, 704
PspFI	CCCAGC	1 cut(s)	255
PspPI	GGNCC	2 cut(s)	193, 621
PsyI	GACNNNGTC	2 cut(s)	164, 197
SaqAI	TTAA	3 cut(s)	218, 329, 435
SatI	GCNGC	3 cut(s)	20, 606, 703
Sau3AI	GATC	1 cut(s)	697
Sau96I	GGNCC	2 cut(s)	193, 621
ScrFI	CCNGG	1 cut(s)	185
SfaNI	GCATC	1 cut(s)	307
SinI	GGWCC	1 cut(s)	193
SmlI	CTYRAG	2 cut(s)	334, 434
SmoI	CTYRAG	2 cut(s)	334, 434
Sse9I	AATT	4 cut(s)	74, 112, 573, 736
SsiI	CCGC	1 cut(s)	702
SspI	AATATT	1 cut(s)	593
SspMI	CTAG	2 cut(s)	383, 609
StyD4I	CCNGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	673
TasI	AATT	4 cut(s)	74, 112, 573, 736
TauI	GCSGC	1 cut(s)	705
TfiI	GAWTC	1 cut(s)	342
Tru1I	TTAA	3 cut(s)	218, 329, 435
Tru9I	TTAA	3 cut(s)	218, 329, 435
TscAI	CASTG	2 cut(s)	534, 697
TseI	GCWGC	2 cut(s)	19, 605
TspDTI	ATGAA	3 cut(s)	221, 585, 732
TspRI	CASTG	2 cut(s)	534, 697
Tth111I	GACNNNGTC	2 cut(s)	164, 197
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	112
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	2 cut(s)	383, 609
Zsp2I	ATGCAT	2 cut(s)	300, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.