Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015389

Physical Location & Seq

Genomic Coordinates Reverse (-)

7318080 .. 7321521

Gene Structure 3442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G096800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGGGATGAGATGGCAGATAAGATGAAGTATGTAAATGAGGTTGTATTGAAGAGAAGGAAAAGCAATGAAGAGCTGGCTTTAAGGAGGAAAGAGCAGTTGGAGCAGAGGAAGTTTAGGTCTCAGAAAAATAAGCAAGAATTTATTAAGAAACCTGAAGATTTCGTCAAAGAGTTTCGCTACAGGGAGATGGACCTCGTCCATATGAAACACAGGTTAAAGAGAAAAAGGCCAGAATTGGAGACAACTAACTCACAGCTTCTTTTGGTCATTCGCATACAGGGGAAAAATGACATGCACCCTACTGTTAGGAAGACCTTATACAGCCTAAGATTGAGGAAGATTTTCAATGCTGTCTTTGTGAAAGCAAGTGATGCAATAATAGAGAAGTTGCTGAGGGTGCAGCCGTATGTTTCCTATGGGTATCCTAACCTTAAGAATGTGAGGGAGCTGATTTACAAGAAGGGTTTTGCAAAGATAGACAAGAAGAAAGTTCCTCTGACAGACAACAACCTTATTGAACAGGAAATGGGGAAGCATGATATTATATGCATAGAAGATATAGTGCATGAGATTGCTACCATTGGCCCACATTTTAAGGAGGTTACCAGTTTTCTATGGCCCTTTGTGCTCAACAAGCCAGAAGTAGGACTAAAAGGGTCAAAAATGGCATACAAGAATGGTGGAGACGCGGGCGATCGCGAGGACAAGATCAATGAACTAATTAGCAAGATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

247

Amino Acids

29.06

Weight (kDa)

9.75

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80750
fragaria_vesca	FvH4_6g28820
malus_domestica	MD00G1084000.v1.1 MD17G1221600.v1.1
prunus_persica	Prupe.3G096800_v2.0.a1
pyrus_communis	pycom09g14210
rosa_chinensis	RchiOBHm_Chr2g0133291 RchiOBHm_Chr2g0133351
rosa_multiflora	Rmu_sc0003874.1_g000013
rosa_roxburghii	Rroxscaffold_2G00111240
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363600 Rh2BG369300 Rh2CG346800 Rh2DG386300
rosa_wichuraiana	Rw2G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	692, 702
AciI	CCGC	1 cut(s)	692
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	647
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	52, 349, 521
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	3 cut(s)	76, 259, 451
AluI	AGCT	3 cut(s)	76, 259, 451
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	3 cut(s)	126, 236, 681
AoxI	GGCC	3 cut(s)	230, 586, 620
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	1 cut(s)	140
AsiSI	GCGATCGC	1 cut(s)	700
Asp700I	GAANNNNTTC	1 cut(s)	344
AspS9I	GGNCC	3 cut(s)	193, 587, 621
AvaII	GGWCC	1 cut(s)	193
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	633
BbvCI	CCTCAGC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	2 cut(s)	7, 184
BceAI	ACGGC	1 cut(s)	391
BciVI	GTATCC	1 cut(s)	435
BcoDI	GTCTC	3 cut(s)	126, 236, 681
BfmI	CTRYAG	1 cut(s)	181
BfrI	CTTAAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	193, 587, 621
BmsI	GCATC	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	647
Bse1I	ACTGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	647
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	2 cut(s)	137, 386
BseNI	ACTGG	1 cut(s)	609
BseXI	GCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	2 cut(s)	692, 702
Bsh1285I	CGRYCG	1 cut(s)	700
BshFI	GGCC	3 cut(s)	232, 588, 622
BsiEI	CGRYCG	1 cut(s)	700
BsiHKAI	GWGCWC	1 cut(s)	633
BslI	CCNNNNNNNGG	1 cut(s)	647
BsmAI	GTCTC	3 cut(s)	126, 236, 681
BsmBI	CGTCTC	1 cut(s)	681
BsnI	GGCC	3 cut(s)	232, 588, 622
Bso31I	GGTCTC	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	2 cut(s)	697, 711
Bsp68I	TCGCGA	1 cut(s)	702
BspACI	CCGC	1 cut(s)	692
BspANI	GGCC	3 cut(s)	232, 588, 622
BspCNI	CTCAG	2 cut(s)	136, 387
BspFNI	CGCG	2 cut(s)	692, 702
BspQI	GCTCTTC	1 cut(s)	66
BspTI	CTTAAG	1 cut(s)	434
BspTNI	GGTCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	609
BssMI	GATC	2 cut(s)	697, 711
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	2 cut(s)	47, 66
BstAFI	CTTAAG	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	78, 694
BstDEI	CTNAG	3 cut(s)	123, 329, 395
BstEII	GGTNACC	1 cut(s)	604
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	2 cut(s)	692, 702
BstKTI	GATC	2 cut(s)	700, 714
BstMAI	GTCTC	3 cut(s)	126, 236, 681
BstMBI	GATC	2 cut(s)	697, 711
BstMCI	CGRYCG	1 cut(s)	700
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 374, 400, 628, 637
BstNSI	RCATGY	1 cut(s)	298
BstPI	GGTNACC	1 cut(s)	604
BstSFI	CTRYAG	1 cut(s)	181
BstUI	CGCG	2 cut(s)	692, 702
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	320
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	3 cut(s)	232, 588, 622
BtsCI	GGATG	1 cut(s)	13
BtuMI	TCGCGA	1 cut(s)	702
Cac8I	GCNNGC	2 cut(s)	78, 694
Cfr13I	GGNCC	3 cut(s)	193, 587, 621
CseI	GACGC	1 cut(s)	698
CspCI	CAANNNNNGTGG	2 cut(s)	664, 699
CviAII	CATG	3 cut(s)	295, 539, 569
DdeI	CTNAG	3 cut(s)	123, 329, 395
DpnI	GATC	2 cut(s)	699, 713
DpnII	GATC	2 cut(s)	697, 711
Eam1104I	CTCTTC	2 cut(s)	47, 66
EarI	CTCTTC	2 cut(s)	47, 66
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	177
Eco91I	GGTNACC	1 cut(s)	604
EcoO65I	GGTNACC	1 cut(s)	604
EcoT22I	ATGCAT	1 cut(s)	554
Esp3I	CGTCTC	1 cut(s)	681
FaeI	CATG	3 cut(s)	298, 542, 572
FatI	CATG	3 cut(s)	294, 538, 568
FauI	CCCGC	1 cut(s)	685
FauNDI	CATATG	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	404
GluI	GCNGC	1 cut(s)	404
HaeIII	GGCC	3 cut(s)	232, 588, 622
HgaI	GACGC	1 cut(s)	698
Hin1II	CATG	3 cut(s)	298, 542, 572
Hpy188I	TCNGA	2 cut(s)	126, 501
Hpy188III	TCNNGA	1 cut(s)	701
HpyAV	CCTTC	2 cut(s)	51, 457
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	6 cut(s)	298, 377, 403, 473, 552, 568
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 374, 400, 628, 637
HpyF3I	CTNAG	3 cut(s)	123, 329, 395
Hsp92II	CATG	3 cut(s)	298, 542, 572
Kzo9I	GATC	2 cut(s)	697, 711
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	2 cut(s)	103, 448
LpnPI	CCDG	9 cut(s)	62, 168, 169, 199, 246, 266, 509, 622, 654
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	2 cut(s)	699, 713
MboI	GATC	2 cut(s)	697, 711
MboII	GAAGA	7 cut(s)	64, 83, 170, 325, 352, 499, 569
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	4 cut(s)	140, 236, 723, 736
MmeI	TCCRAC	1 cut(s)	81
Mph1103I	ATGCAT	1 cut(s)	554
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	5 cut(s)	83, 147, 218, 435, 597
MspCI	CTTAAG	1 cut(s)	434
MvnI	CGCG	2 cut(s)	692, 702
MwoI	GCNNNNNNNGC	5 cut(s)	103, 374, 400, 628, 637
NdeI	CATATG	1 cut(s)	204
NdeII	GATC	2 cut(s)	697, 711
NlaIII	CATG	3 cut(s)	298, 542, 572
NruI	TCGCGA	1 cut(s)	702
NsiI	ATGCAT	1 cut(s)	554
NspI	RCATGY	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	344
PflFI	GACNNNGTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	405
Ple19I	CGATCG	1 cut(s)	700
PspEI	GGTNACC	1 cut(s)	604
PspPI	GGNCC	3 cut(s)	193, 587, 621
PsyI	GACNNNGTC	1 cut(s)	197
PvuI	CGATCG	1 cut(s)	700
RgaI	GCGATCGC	1 cut(s)	700
RruI	TCGCGA	1 cut(s)	702
SapI	GCTCTTC	1 cut(s)	66
SaqAI	TTAA	5 cut(s)	83, 147, 218, 435, 597
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	2 cut(s)	697, 711
Sau96I	GGNCC	3 cut(s)	193, 587, 621
SduI	GDGCHC	1 cut(s)	633
SfaAI	GCGATCGC	1 cut(s)	700
SfaNI	GCATC	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	181
SgfI	GCGATCGC	1 cut(s)	700
SinI	GGWCC	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	4 cut(s)	140, 236, 723, 736
SsiI	CCGC	1 cut(s)	692
TaaI	ACNGT	1 cut(s)	307
TasI	AATT	4 cut(s)	140, 236, 723, 736
Tru1I	TTAA	5 cut(s)	83, 147, 218, 435, 597
Tru9I	TTAA	5 cut(s)	83, 147, 218, 435, 597
TseI	GCWGC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	41, 84, 221, 732
Tth111I	GACNNNGTC	1 cut(s)	197
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.