Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0015389

Physical Location & Seq

Genomic Coordinates Forward (+)

27020783 .. 27023966

Gene Structure 3184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1221600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGACGGAAGAGGTGGCGCAGCCGTTGACGTATATACCGGAGGTGATATTGAAGAGAAGGAAAACCAATGAGGAGTTGGCTTTGAGGAGGAAAGAGCAATTGGAGCAGAGGAAGTTTAAGTCTCAGCAAAATAAGCAAGAATATATTAAGAAACCTGAGGATTTCGTCAAGGAGTATCGCTACAGGGAGATGGACCTCGTCCATATGAGACACAGGTTAAAGAGAAAAAGGCCGACATTGGATGCAACTAACTCACAGCTTCTTTTGATCATCCGCATACAGGGGAAAAATGACATGCACCCTGTTGTTAGGAAGGCCTTATACAGCCTAAAATTGAGGAAAGTTTTCAATGCTGTCTTTGTGAAAACAACTGATGCTATATTAGAAAAGTTGCAGAGGGTGCAGCCGTATGTTACCTACGGGTATCCTAATCTTAAGAATGTGAGGGATCTGATTTACAAGAAGGGCTTTGCAAAGATCGACAAGAAGAAAGTTCCTCTGACAGACAACAACCTTATTGAACAGGCAATGGGGCAGCATGATGTTATATGCATAGAAGATATAGTTCATGAAATTTCTACGATTGGCCCACATTTTAAGGAGGTTACCGGCTTTTTATGGCCCTTTGTGCTCAACAAGCCTGAAGCAGGATTGAAAGGCTCAAAAACGGTATTCAAGGACGGGGGAGACGCGGGCGATCGCGGGGATAAGATCAATGAACTAATTAGCAAGATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

247

Amino Acids

28.8

Weight (kDa)

9.73

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	12 - 76	3.1e-10	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	88 - 138	3.6e-11	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80750
fragaria_vesca	FvH4_6g28820
malus_domestica	MD00G1084000.v1.1 MD17G1221600.v1.1
prunus_persica	Prupe.3G096800_v2.0.a1
pyrus_communis	pycom09g14210
rosa_chinensis	RchiOBHm_Chr2g0133291 RchiOBHm_Chr2g0133351
rosa_multiflora	Rmu_sc0003874.1_g000013
rosa_roxburghii	Rroxscaffold_2G00111240
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363600 Rh2BG369300 Rh2CG346800 Rh2DG386300
rosa_wichuraiana	Rw2G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	692, 702
AciI	CCGC	3 cut(s)	274, 692, 702
AclWI	GGATC	1 cut(s)	456
AcsI	RAATTY	1 cut(s)	573
AcuI	CTGAAG	1 cut(s)	663
AfiI	CCNNNNNNNGG	2 cut(s)	280, 647
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	5 cut(s)	52, 349, 521, 655, 676
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	3 cut(s)	126, 202, 681
AlwI	GGATC	1 cut(s)	456
AoxI	GGCC	4 cut(s)	230, 315, 586, 620
ApeKI	GCWGC	3 cut(s)	19, 403, 535
ApoI	RAATTY	1 cut(s)	573
AsiSI	GCGATCGC	1 cut(s)	700
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	3 cut(s)	193, 587, 621
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	193
AxyI	CCTNAGG	1 cut(s)	156
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	3 cut(s)	31, 415, 547
BccI	CCATC	1 cut(s)	184
BceAI	ACGGC	2 cut(s)	7, 391
BciVI	GTATCC	1 cut(s)	435
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	3 cut(s)	126, 202, 681
BfmI	CTRYAG	1 cut(s)	181
BfrI	CTTAAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	3 cut(s)	20, 404, 536
BlsI	GCNGC	3 cut(s)	21, 405, 537
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	193, 587, 621
BmsI	GCATC	2 cut(s)	232, 364
BsaWI	WCCGGW	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 647
Bse118I	RCCGGY	1 cut(s)	608
Bse21I	CCTNAGG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	534
BseGI	GGATG	2 cut(s)	247, 270
BseLI	CCNNNNNNNGG	2 cut(s)	280, 647
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	2 cut(s)	137, 147
BseRI	GAGGAG	2 cut(s)	86, 100
BseXI	GCAGC	3 cut(s)	31, 415, 547
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	2 cut(s)	692, 702
Bsh1285I	CGRYCG	1 cut(s)	700
BshFI	GGCC	4 cut(s)	232, 317, 588, 622
BsiEI	CGRYCG	1 cut(s)	700
BsiHKAI	GWGCWC	1 cut(s)	633
BsiSI	CCGG	2 cut(s)	38, 609
BslI	CCNNNNNNNGG	2 cut(s)	280, 647
BsmAI	GTCTC	3 cut(s)	126, 202, 681
BsmBI	CGTCTC	1 cut(s)	681
BsnI	GGCC	4 cut(s)	232, 317, 588, 622
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	5 cut(s)	267, 448, 477, 697, 711
BspACI	CCGC	3 cut(s)	274, 692, 702
BspANI	GGCC	4 cut(s)	232, 317, 588, 622
BspCNI	CTCAG	2 cut(s)	136, 148
BspFNI	CGCG	2 cut(s)	692, 702
BspHI	TCATGA	1 cut(s)	568
BspPI	GGATC	1 cut(s)	456
BspTI	CTTAAG	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	608
BssAI	RCCGGY	1 cut(s)	608
BssMI	GATC	5 cut(s)	267, 448, 477, 697, 711
Bst4CI	ACNGT	1 cut(s)	670
Bst6I	CTCTTC	2 cut(s)	3, 47
BstAFI	CTTAAG	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	694
BstDEI	CTNAG	2 cut(s)	123, 156
BstEII	GGTNACC	1 cut(s)	604
BstENI	CCTNNNNNAGG	1 cut(s)	645
BstF5I	GGATG	2 cut(s)	247, 270
BstFNI	CGCG	2 cut(s)	692, 702
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	5 cut(s)	270, 451, 480, 700, 714
BstMAI	GTCTC	3 cut(s)	126, 202, 681
BstMBI	GATC	5 cut(s)	267, 448, 477, 697, 711
BstMCI	CGRYCG	1 cut(s)	700
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 133, 400, 628, 637
BstNSI	RCATGY	1 cut(s)	298
BstPI	GGTNACC	1 cut(s)	604
BstSFI	CTRYAG	1 cut(s)	181
BstUI	CGCG	2 cut(s)	692, 702
BstV1I	GCAGC	3 cut(s)	31, 415, 547
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
Bsu36I	CCTNAGG	1 cut(s)	156
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	4 cut(s)	232, 317, 588, 622
BtsCI	GGATG	2 cut(s)	247, 270
Cac8I	GCNNGC	1 cut(s)	694
CciI	TCATGA	1 cut(s)	568
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	608
Cfr13I	GGNCC	3 cut(s)	193, 587, 621
CseI	GACGC	1 cut(s)	698
CviAII	CATG	3 cut(s)	295, 539, 569
DdeI	CTNAG	2 cut(s)	123, 156
DpnI	GATC	5 cut(s)	269, 450, 479, 699, 713
DpnII	GATC	5 cut(s)	267, 448, 477, 697, 711
Eam1104I	CTCTTC	2 cut(s)	3, 47
EarI	CTCTTC	2 cut(s)	3, 47
Eco147I	AGGCCT	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	663
Eco81I	CCTNAGG	1 cut(s)	156
Eco91I	GGTNACC	1 cut(s)	604
EcoNI	CCTNNNNNAGG	1 cut(s)	645
EcoO65I	GGTNACC	1 cut(s)	604
EcoT22I	ATGCAT	1 cut(s)	554
Esp3I	CGTCTC	1 cut(s)	681
FaeI	CATG	3 cut(s)	298, 542, 572
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FatI	CATG	3 cut(s)	294, 538, 568
FauI	CCCGC	2 cut(s)	685, 695
FauNDI	CATATG	1 cut(s)	204
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	3 cut(s)	20, 404, 536
FokI	GGATG	2 cut(s)	254, 257
Fsp4HI	GCNGC	3 cut(s)	20, 404, 536
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	3 cut(s)	20, 404, 536
HaeIII	GGCC	4 cut(s)	232, 317, 588, 622
HapII	CCGG	2 cut(s)	38, 609
HgaI	GACGC	1 cut(s)	698
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	3 cut(s)	298, 542, 572
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HpaII	CCGG	2 cut(s)	38, 609
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	2 cut(s)	453, 501
Hpy188III	TCNNGA	1 cut(s)	569
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	3 cut(s)	51, 307, 457
HpyCH4III	ACNGT	1 cut(s)	670
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	6 cut(s)	245, 298, 394, 403, 473, 552
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 133, 400, 628, 637
HpyF3I	CTNAG	2 cut(s)	123, 156
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	3 cut(s)	298, 542, 572
HspAI	GCGC	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	5 cut(s)	267, 448, 477, 697, 711
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	3 cut(s)	31, 415, 547
LweI	GCATC	2 cut(s)	232, 364
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	412, 604
MalI	GATC	5 cut(s)	269, 450, 479, 699, 713
MboI	GATC	5 cut(s)	267, 448, 477, 697, 711
MboII	GAAGA	4 cut(s)	20, 64, 499, 569
MfeI	CAATTG	1 cut(s)	98
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	5 cut(s)	98, 332, 573, 723, 736
Mph1103I	ATGCAT	1 cut(s)	554
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	5 cut(s)	117, 147, 218, 435, 597
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	2 cut(s)	38, 609
MunI	CAATTG	1 cut(s)	98
MvnI	CGCG	2 cut(s)	692, 702
MwoI	GCNNNNNNNGC	5 cut(s)	103, 133, 400, 628, 637
NdeI	CATATG	1 cut(s)	204
NdeII	GATC	5 cut(s)	267, 448, 477, 697, 711
NlaIII	CATG	3 cut(s)	298, 542, 572
NsiI	ATGCAT	1 cut(s)	554
NspI	RCATGY	1 cut(s)	298
PagI	TCATGA	1 cut(s)	568
PceI	AGGCCT	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	344
PflFI	GACNNNGTC	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	21, 405, 537
Ple19I	CGATCG	1 cut(s)	700
PspEI	GGTNACC	1 cut(s)	604
PspPI	GGNCC	3 cut(s)	193, 587, 621
PsuI	RGATCY	1 cut(s)	448
PsyI	GACNNNGTC	1 cut(s)	197
PvuI	CGATCG	1 cut(s)	700
RgaI	GCGATCGC	1 cut(s)	700
SaqAI	TTAA	5 cut(s)	117, 147, 218, 435, 597
SatI	GCNGC	3 cut(s)	20, 404, 536
Sau3AI	GATC	5 cut(s)	267, 448, 477, 697, 711
Sau96I	GGNCC	3 cut(s)	193, 587, 621
SduI	GDGCHC	1 cut(s)	633
SfaAI	GCGATCGC	1 cut(s)	700
SfaNI	GCATC	2 cut(s)	232, 364
SfcI	CTRYAG	1 cut(s)	181
SgfI	GCGATCGC	1 cut(s)	700
SinI	GGWCC	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	5 cut(s)	98, 332, 573, 723, 736
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	3 cut(s)	274, 692, 702
StuI	AGGCCT	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	670
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	480
TasI	AATT	5 cut(s)	98, 332, 573, 723, 736
Tru1I	TTAA	5 cut(s)	117, 147, 218, 435, 597
Tru9I	TTAA	5 cut(s)	117, 147, 218, 435, 597
TseI	GCWGC	3 cut(s)	19, 403, 535
TspDTI	ATGAA	3 cut(s)	557, 585, 732
TspGWI	ACGGA	1 cut(s)	20
Tth111I	GACNNNGTC	1 cut(s)	197
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	193
XagI	CCTNNNNNAGG	1 cut(s)	645
XapI	RAATTY	1 cut(s)	573
XceI	RCATGY	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.