Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015389

Physical Location & Seq

Genomic Coordinates Reverse (-)

46761823 .. 46765345

Gene Structure 3523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG346800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAACACAGGTTGAAGAGAAAGAGACCAGCATTAGAGACAACTAACCCCCAGCTTCTTTTGGTCATTCGCATACAGGGGAAAAATGACATGCATCCTGCTGTTAGGAAGAACTTATACAGCCTGAACTTGAGGAAAATCTTCAATGCTGTTTTCGTGAGAGCAGATGAAGCAATGTTGGAAAAGTTGCAGAGGGTGGAGCCTTATGTTACCTATGGGTATCCTAGCCTTAAGAATGTGAAGGAGTTGATTTACAAGAAAGGTTATGCAAAGATAGGCAAGCAAAGAGTTCCTTTGACAGACAACAACTTGATTGAAGAGGCACTGGGGAAGTATAATATCATATGCATAGAAGATATAGTGCATGAAATTGCTTCTACTGGTAAATATTTTAAGGAGGCTGCCAGCTTTCTATGGCCCTTTACACTCAACAAGCCAGAAGTAGGATTGAAAGGAGTAAAAGCACGTTACCTAGATGGTGGAGACACTGGTAATCGGGAGGATAAAATCAATGATCTGATTAGCAAGATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

178

Amino Acids

20.48

Weight (kDa)

9.71

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30	PF00327	20 - 70	7.1e-13	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80750
fragaria_vesca	FvH4_6g28820
malus_domestica	MD00G1084000.v1.1 MD17G1221600.v1.1
prunus_persica	Prupe.3G096800_v2.0.a1
pyrus_communis	pycom09g14210
rosa_chinensis	RchiOBHm_Chr2g0133291 RchiOBHm_Chr2g0133351
rosa_multiflora	Rmu_sc0003874.1_g000013
rosa_roxburghii	Rroxscaffold_2G00111240
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363600 Rh2BG369300 Rh2CG346800 Rh2DG386300
rosa_wichuraiana	Rw2G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	443
AflII	CTTAAG	1 cut(s)	230
AgsI	TTSAA	4 cut(s)	16, 145, 317, 451
AluBI	AGCT	2 cut(s)	55, 408
AluI	AGCT	2 cut(s)	55, 408
Alw26I	GTCTC	3 cut(s)	19, 32, 477
AoxI	GGCC	1 cut(s)	416
ApeKI	GCWGC	1 cut(s)	401
Asp700I	GAANNNNTTC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	417
BarI	GAAGNNNNNNTAC	2 cut(s)	101, 133
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	1 cut(s)	470
BciVI	GTATCC	1 cut(s)	231
BcoDI	GTCTC	3 cut(s)	19, 32, 477
BfaI	CTAG	2 cut(s)	225, 473
BfrI	CTTAAG	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	231
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	201
BmrI	ACTGGG	1 cut(s)	335
BmsI	GCATC	1 cut(s)	103
BmuI	ACTGGG	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	151
BsaI	GGTCTC	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	3 cut(s)	330, 385, 493
Bse3DI	GCAATG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMI	GCAATG	1 cut(s)	180
BseNI	ACTGG	3 cut(s)	330, 385, 493
BseXI	GCAGC	1 cut(s)	388
BseYI	CCCAGC	1 cut(s)	51
BshFI	GGCC	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	3 cut(s)	19, 32, 477
BsnI	GGCC	1 cut(s)	418
Bso31I	GGTCTC	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	514
BspANI	GGCC	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	201
BspTI	CTTAAG	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	3 cut(s)	330, 385, 493
BssMI	GATC	1 cut(s)	514
Bst6I	CTCTTC	2 cut(s)	11, 312
BstAFI	CTTAAG	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	281, 406
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	517
BstMAI	GTCTC	3 cut(s)	19, 32, 477
BstMBI	GATC	1 cut(s)	514
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	418
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	323, 486
Cac8I	GCNNGC	2 cut(s)	281, 406
Cfr13I	GGNCC	1 cut(s)	417
CviAII	CATG	2 cut(s)	91, 365
CviJI	RGCY	8 cut(s)	55, 123, 202, 228, 401, 408, 418, 436
CviKI_1	RGCY	8 cut(s)	55, 123, 202, 228, 401, 408, 418, 436
DpnI	GATC	1 cut(s)	516
DpnII	GATC	1 cut(s)	514
Eam1104I	CTCTTC	2 cut(s)	11, 312
EarI	CTCTTC	2 cut(s)	11, 312
Eco31I	GGTCTC	1 cut(s)	19
EcoT22I	ATGCAT	2 cut(s)	96, 350
FaeI	CATG	2 cut(s)	94, 368
FalI	AAGNNNNNCTT	2 cut(s)	277, 309
FatI	CATG	2 cut(s)	90, 364
FauNDI	CATATG	1 cut(s)	344
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	2 cut(s)	225, 473
GluI	GCNGC	1 cut(s)	402
GsaI	CCCAGC	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	418
Hin1II	CATG	2 cut(s)	94, 368
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	2 cut(s)	157, 497
HpyAV	CCTTC	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	5 cut(s)	94, 190, 269, 348, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	2 cut(s)	94, 368
Kzo9I	GATC	1 cut(s)	514
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	2 cut(s)	225, 473
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	2 cut(s)	208, 467
MalI	GATC	1 cut(s)	516
MboI	GATC	1 cut(s)	514
MboII	GAAGA	5 cut(s)	28, 121, 133, 329, 365
MluCI	AATT	2 cut(s)	369, 532
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	5 cut(s)	126, 186, 313, 391, 493
Mph1103I	ATGCAT	2 cut(s)	96, 350
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	2 cut(s)	231, 393
MspCI	CTTAAG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeI	CATATG	1 cut(s)	344
NdeII	GATC	1 cut(s)	514
NlaIII	CATG	2 cut(s)	94, 368
NlaIV	GGNNCC	1 cut(s)	201
NsiI	ATGCAT	2 cut(s)	96, 350
NspI	RCATGY	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	403
PspFI	CCCAGC	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	417
SaqAI	TTAA	2 cut(s)	231, 393
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	1 cut(s)	514
Sau96I	GGNCC	1 cut(s)	417
SetI	ASST	7 cut(s)	14, 57, 215, 265, 410, 469, 474
SfaNI	GCATC	1 cut(s)	103
SmlI	CTYRAG	2 cut(s)	130, 230
SmoI	CTYRAG	2 cut(s)	130, 230
Sse9I	AATT	2 cut(s)	369, 532
SspI	AATATT	1 cut(s)	389
SspMI	CTAG	2 cut(s)	225, 473
TaiI	ACGT	1 cut(s)	469
TasI	AATT	2 cut(s)	369, 532
Tru1I	TTAA	2 cut(s)	231, 393
Tru9I	TTAA	2 cut(s)	231, 393
TscAI	CASTG	2 cut(s)	330, 493
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	3 cut(s)	17, 183, 381
TspRI	CASTG	2 cut(s)	330, 493
Vha464I	CTTAAG	1 cut(s)	230
XceI	RCATGY	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	140
XspI	CTAG	2 cut(s)	225, 473
Zsp2I	ATGCAT	2 cut(s)	96, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.