Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0015389

Physical Location & Seq

Genomic Coordinates Reverse (-)

16782927 .. 16786035

Gene Structure 3109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1084000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCGCAGCCGTTGACGTATATACCGGAGGTTATATTGAAGAGAAGGAAAACCAATGAGGAGTTGGCTTTGAGGAGGAAAGAGCAATTGGAGCAGAGGAAGTTTAAGTCTCAGCAAAATAAGCAAGAATATATTAAGAAACCTGAGGATTTCATCAAAGAGTATCGCTACAGGGAGATGGACCTTGTCCACATGAAACACAGGTTAAAGAGAAAAAGGCCAGCATTGGAGACAGCTAACTCACAGCTTCTTTTGGTCGTCCGCATACAGGGGAAAAATGACATGCACCCTGTTGTTAGGAAGGCCTTATATAGCCTAAAATTGAGGAAAATTTTCAATGCTGTCTTTGTGAAAGCAACTGACGCTATATTAGAAAAGTTGCAGAGGGTGCAGCCGTATGTTACCTATGGGTATCCTAACCTTAAGAATGTGAGGGAGCTGATTTACAAGAAGGGCTTTGCAAAGATAGACAAGAAGAAAGTTCCTCTGACAGACAACAACCTTATTGAACAGGCAATGGGGCAGTATGATGTTATATGCATAGAAGATATAGTGCATGAAATTGCCACGATTGGCCCACATTTTAAGGAGGTTACTGGTTTTTTATGGCCCTTTGTGCTTAACAAGCCTGAAGCAGGATTAAAAGGTTCAAAAACGGTATACAAGGATGGCGGAGATGCTGGCGATCGCGGGGATAAGATCAATGAACTAATTAGCAAGATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

243

Amino Acids

28.31

Weight (kDa)

9.77

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	8 - 72	1.3e-09	Ribosomal L30 N-terminal domain
Ribosomal_L30	PF00327	84 - 134	1.2e-11	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80750
fragaria_vesca	FvH4_6g28820
malus_domestica	MD00G1084000.v1.1 MD17G1221600.v1.1
prunus_persica	Prupe.3G096800_v2.0.a1
pyrus_communis	pycom09g14210
rosa_chinensis	RchiOBHm_Chr2g0133291 RchiOBHm_Chr2g0133351
rosa_multiflora	Rmu_sc0003874.1_g000013
rosa_roxburghii	Rroxscaffold_2G00111240
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363600 Rh2BG369300 Rh2CG346800 Rh2DG386300
rosa_wichuraiana	Rw2G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	660
AccII	CGCG	1 cut(s)	690
AciI	CCGC	3 cut(s)	262, 672, 690
AcsI	RAATTY	1 cut(s)	330
AcuI	CTGAAG	1 cut(s)	651
AfiI	CCNNNNNNNGG	2 cut(s)	268, 635
AflII	CTTAAG	1 cut(s)	422
AgsI	TTSAA	4 cut(s)	40, 337, 509, 651
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	3 cut(s)	236, 247, 439
AluI	AGCT	3 cut(s)	236, 247, 439
Alw26I	GTCTC	2 cut(s)	114, 224
AoxI	GGCC	4 cut(s)	218, 303, 574, 608
ApeKI	GCWGC	2 cut(s)	7, 391
ApoI	RAATTY	1 cut(s)	330
AsiSI	GCGATCGC	1 cut(s)	688
Asp700I	GAANNNNTTC	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	181, 575, 609
AvaII	GGWCC	1 cut(s)	181
AxyI	CCTNAGG	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	19, 403
BccI	CCATC	2 cut(s)	172, 662
BceAI	ACGGC	1 cut(s)	379
BciVI	GTATCC	1 cut(s)	423
BcoDI	GTCTC	2 cut(s)	114, 224
BfmI	CTRYAG	1 cut(s)	169
BfrI	CTTAAG	1 cut(s)	422
BfuI	GTATCC	1 cut(s)	423
BisI	GCNGC	2 cut(s)	8, 392
BlsI	GCNGC	2 cut(s)	9, 393
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	3 cut(s)	181, 575, 609
BmsI	GCATC	1 cut(s)	667
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 635
Bse1I	ACTGG	1 cut(s)	601
Bse21I	CCTNAGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	522
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	2 cut(s)	268, 635
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	125, 135
BseNI	ACTGG	1 cut(s)	601
BseRI	GAGGAG	2 cut(s)	74, 88
BseXI	GCAGC	2 cut(s)	19, 403
BsgI	GTGCAG	1 cut(s)	410
Bsh1236I	CGCG	1 cut(s)	690
Bsh1285I	CGRYCG	1 cut(s)	688
BshFI	GGCC	4 cut(s)	220, 305, 576, 610
BsiEI	CGRYCG	1 cut(s)	688
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	268, 635
BsmAI	GTCTC	2 cut(s)	114, 224
BsnI	GGCC	4 cut(s)	220, 305, 576, 610
Bsp143I	GATC	2 cut(s)	685, 699
BspACI	CCGC	3 cut(s)	262, 672, 690
BspANI	GGCC	4 cut(s)	220, 305, 576, 610
BspCNI	CTCAG	2 cut(s)	124, 136
BspFNI	CGCG	1 cut(s)	690
BspTI	CTTAAG	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	1 cut(s)	601
BssMI	GATC	2 cut(s)	685, 699
BssNAI	GTATAC	1 cut(s)	661
Bst1107I	GTATAC	1 cut(s)	661
Bst4CI	ACNGT	1 cut(s)	658
Bst6I	CTCTTC	1 cut(s)	35
BstAFI	CTTAAG	1 cut(s)	422
BstAPI	GCANNNNNTGC	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	222, 682
BstDEI	CTNAG	2 cut(s)	111, 144
BstENI	CCTNNNNNAGG	1 cut(s)	633
BstF5I	GGATG	1 cut(s)	673
BstFNI	CGCG	1 cut(s)	690
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	688, 702
BstMAI	GTCTC	2 cut(s)	114, 224
BstMBI	GATC	2 cut(s)	685, 699
BstMCI	CGRYCG	1 cut(s)	688
BstMWI	GCNNNNNNNGC	6 cut(s)	91, 121, 362, 388, 616, 625
BstNSI	RCATGY	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	169
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	2 cut(s)	19, 403
BstZ17I	GTATAC	1 cut(s)	661
Bsu36I	CCTNAGG	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	423
BsuRI	GGCC	4 cut(s)	220, 305, 576, 610
BtsCI	GGATG	1 cut(s)	673
Cac8I	GCNNGC	2 cut(s)	222, 682
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	181, 575, 609
CseI	GACGC	1 cut(s)	371
CviAII	CATG	3 cut(s)	193, 283, 557
DdeI	CTNAG	2 cut(s)	111, 144
DpnI	GATC	2 cut(s)	687, 701
DpnII	GATC	2 cut(s)	685, 699
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	687
Eco147I	AGGCCT	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	651
Eco81I	CCTNAGG	1 cut(s)	144
EcoNI	CCTNNNNNAGG	1 cut(s)	633
EcoT22I	ATGCAT	1 cut(s)	542
FaeI	CATG	3 cut(s)	196, 286, 560
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FatI	CATG	3 cut(s)	192, 282, 556
FauI	CCCGC	1 cut(s)	683
FblI	GTMKAC	1 cut(s)	660
Fnu4HI	GCNGC	2 cut(s)	8, 392
FokI	GGATG	1 cut(s)	680
Fsp4HI	GCNGC	2 cut(s)	8, 392
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	8, 392
HaeIII	GGCC	4 cut(s)	220, 305, 576, 610
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	1 cut(s)	371
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	196, 286, 560
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	26
Hpy166II	GTNNAC	3 cut(s)	15, 190, 661
Hpy188I	TCNGA	1 cut(s)	489
Hpy8I	GTNNAC	3 cut(s)	15, 190, 661
HpyAV	CCTTC	3 cut(s)	39, 295, 445
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	6 cut(s)	286, 382, 391, 461, 540, 556
HpyF10VI	GCNNNNNNNGC	6 cut(s)	91, 121, 362, 388, 616, 625
HpyF3I	CTNAG	2 cut(s)	111, 144
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	3 cut(s)	196, 286, 560
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	2 cut(s)	685, 699
LmnI	GCTCC	2 cut(s)	91, 436
Lsp1109I	GCAGC	2 cut(s)	19, 403
LweI	GCATC	1 cut(s)	667
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	400, 592
MalI	GATC	2 cut(s)	687, 701
MboI	GATC	2 cut(s)	685, 699
MboII	GAAGA	3 cut(s)	52, 487, 557
MfeI	CAATTG	1 cut(s)	86
MluCI	AATT	6 cut(s)	86, 320, 330, 561, 711, 724
Mph1103I	ATGCAT	1 cut(s)	542
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	8 cut(s)	105, 135, 206, 423, 585, 621, 641, 727
MspCI	CTTAAG	1 cut(s)	422
MspI	CCGG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	6 cut(s)	91, 121, 362, 388, 616, 625
NdeII	GATC	2 cut(s)	685, 699
NlaIII	CATG	3 cut(s)	196, 286, 560
NsiI	ATGCAT	1 cut(s)	542
NspI	RCATGY	1 cut(s)	286
PceI	AGGCCT	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	332
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	9, 393
Ple19I	CGATCG	1 cut(s)	688
PspPI	GGNCC	3 cut(s)	181, 575, 609
PsyI	GACNNNGTC	1 cut(s)	185
PvuI	CGATCG	1 cut(s)	688
RgaI	GCGATCGC	1 cut(s)	688
SaqAI	TTAA	8 cut(s)	105, 135, 206, 423, 585, 621, 641, 727
SatI	GCNGC	2 cut(s)	8, 392
Sau3AI	GATC	2 cut(s)	685, 699
Sau96I	GGNCC	3 cut(s)	181, 575, 609
SfaAI	GCGATCGC	1 cut(s)	688
SfaNI	GCATC	1 cut(s)	667
SfcI	CTRYAG	1 cut(s)	169
SgfI	GCGATCGC	1 cut(s)	688
SinI	GGWCC	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	6 cut(s)	86, 320, 330, 561, 711, 724
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	3 cut(s)	262, 672, 690
StuI	AGGCCT	1 cut(s)	305
TaaI	ACNGT	1 cut(s)	658
TaiI	ACGT	1 cut(s)	20
TasI	AATT	6 cut(s)	86, 320, 330, 561, 711, 724
Tru1I	TTAA	8 cut(s)	105, 135, 206, 423, 585, 621, 641, 727
Tru9I	TTAA	8 cut(s)	105, 135, 206, 423, 585, 621, 641, 727
TseI	GCWGC	2 cut(s)	7, 391
TspDTI	ATGAA	4 cut(s)	142, 209, 573, 720
Tth111I	GACNNNGTC	1 cut(s)	185
Vha464I	CTTAAG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	181
XagI	CCTNNNNNAGG	1 cut(s)	633
XapI	RAATTY	1 cut(s)	330
XceI	RCATGY	1 cut(s)	286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	660
XmnI	GAANNNNTTC	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.