Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0015389

Physical Location & Seq

Genomic Coordinates Forward (+)

13653648 .. 13656588

Gene Structure 2941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g14210.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCTATTCACTTTATCTTATATTTTATCATTTTTTTTTGCCCTAAACCCCTTCCAAAGCCCATTCGCGCCGCTTAGTCCTTCTCTCACTCTCCTTCCGCCATTTTTTCTCTGCTGCTTCCGCTCTTCAGCCCTTCAACTCTTATTGCTATACCCAGCCGCCAAATCCCAGACGCCTTCAAGCGAGGACGGGGTGATGACGGAAGAGACGGCGCAGCGGTTGACGTATATACCGGAGGTTATATTGAAGAGAAGGAAAACCAATGAGGAGTTGGCTTTGAGGAGGAAAGAACAATTGGAGCAGAGGAAGTTTAAGTCTCAGCAAAATAAGCAAGAATATATTAAGAAACCTGAGGATTTCATCAAAGAGTATCGCTACAGGGAGATGGACCTTGTCCACATGAAACACAGGTTAAAGAGAAAAAGGCCAGCATTGGAGACACCTAACTCACAGCTTCTTTTGGTCGTCCGCATACAAGGGAAAAATGACATGCACCCTGTTGTTAGGAAGGCCTTATATAGCCTAAAATTGAGGAAAATTTTCAATGCTGTCTTTGTGAAAGCAACTGACGCTATATTAGAAAAGTTGCAGAGGGTGCAGCCGTATGTTACCTATGGGTATCCTAACCTTAAGAATGTGAGGGAGCTGATTTACAAGAAGGGCTTTGCAAAGATAGACAAGAAGAAAGTTCCTCTGACAGACAACAACCTTATTGAACAGGCAATGGGGCAGTATGATGTTATATGCATAGAAGATGTAGTGCACGAAATTGCCACGATTGGCCCACATTTTAAGGAGGTTACCGGTTTTTTGTGGCCCATTGTGCTCAACAAGCCTGAAGCAGGATTAAAAGGTTCAAAAACGGTATACAAGGATGGCGGAGATGCTGGCGATCGCGGGGATAAGATCAATGAACTAATTAGCAAGATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

312

Amino Acids

35.98

Weight (kDa)

9.62

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80750
fragaria_vesca	FvH4_6g28820
malus_domestica	MD00G1084000.v1.1 MD17G1221600.v1.1
prunus_persica	Prupe.3G096800_v2.0.a1
pyrus_communis	pycom09g14210
rosa_chinensis	RchiOBHm_Chr2g0133291 RchiOBHm_Chr2g0133351
rosa_multiflora	Rmu_sc0003874.1_g000013
rosa_roxburghii	Rroxscaffold_2G00111240
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363600 Rh2BG369300 Rh2CG346800 Rh2DG386300
rosa_wichuraiana	Rw2G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	867
AccII	CGCG	2 cut(s)	68, 897
AciI	CCGC	8 cut(s)	71, 98, 121, 159, 217, 469, 879, 897
AcsI	RAATTY	1 cut(s)	537
AcuI	CTGAAG	2 cut(s)	111, 858
AcyI	GRCGYC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	842
AflII	CTTAAG	1 cut(s)	629
AgeI	ACCGGT	1 cut(s)	803
AgsI	TTSAA	6 cut(s)	137, 180, 247, 544, 716, 858
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	2 cut(s)	454, 646
AluI	AGCT	2 cut(s)	454, 646
Alw21I	GWGCWC	2 cut(s)	765, 828
Alw26I	GTCTC	3 cut(s)	200, 321, 431
Alw44I	GTGCAC	1 cut(s)	761
AoxI	GGCC	4 cut(s)	425, 510, 781, 815
ApaLI	GTGCAC	1 cut(s)	761
ApeKI	GCWGC	3 cut(s)	114, 214, 598
ApoI	RAATTY	1 cut(s)	537
AsiGI	ACCGGT	1 cut(s)	803
AsiSI	GCGATCGC	1 cut(s)	895
Asp700I	GAANNNNTTC	1 cut(s)	539
AspLEI	GCGC	2 cut(s)	70, 214
AspS9I	GGNCC	3 cut(s)	388, 782, 816
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	388
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	765
Bbv12I	GWGCWC	2 cut(s)	765, 828
BbvI	GCAGC	3 cut(s)	101, 226, 610
BccI	CCATC	2 cut(s)	379, 869
BceAI	ACGGC	2 cut(s)	225, 586
BciVI	GTATCC	1 cut(s)	630
BcoDI	GTCTC	3 cut(s)	200, 321, 431
BfmI	CTRYAG	1 cut(s)	376
BfrI	CTTAAG	1 cut(s)	629
BfuI	GTATCC	1 cut(s)	630
BisI	GCNGC	5 cut(s)	71, 115, 159, 215, 599
BlsI	GCNGC	5 cut(s)	72, 116, 160, 216, 600
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	3 cut(s)	388, 782, 816
BmsI	GCATC	1 cut(s)	874
BsaHI	GRCGYC	1 cut(s)	173
BsaWI	WCCGGW	2 cut(s)	232, 803
Bsc4I	CCNNNNNNNGG	1 cut(s)	842
Bse118I	RCCGGY	1 cut(s)	803
Bse21I	CCTNAGG	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	729
BseGI	GGATG	1 cut(s)	880
BseLI	CCNNNNNNNGG	1 cut(s)	842
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	2 cut(s)	332, 342
BseRI	GAGGAG	2 cut(s)	281, 295
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	3 cut(s)	101, 226, 610
BseYI	CCCAGC	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	617
Bsh1236I	CGCG	2 cut(s)	68, 897
Bsh1285I	CGRYCG	1 cut(s)	895
BshFI	GGCC	4 cut(s)	427, 512, 783, 817
BshTI	ACCGGT	1 cut(s)	803
BsiEI	CGRYCG	1 cut(s)	895
BsiHKAI	GWGCWC	2 cut(s)	765, 828
BsiSI	CCGG	2 cut(s)	233, 804
BslI	CCNNNNNNNGG	1 cut(s)	842
BsmAI	GTCTC	3 cut(s)	200, 321, 431
BsmBI	CGTCTC	1 cut(s)	200
BsnI	GGCC	4 cut(s)	427, 512, 783, 817
Bsp1286I	GDGCHC	2 cut(s)	765, 828
Bsp143I	GATC	2 cut(s)	892, 906
BspACI	CCGC	8 cut(s)	71, 98, 121, 159, 217, 469, 879, 897
BspANI	GGCC	4 cut(s)	427, 512, 783, 817
BspCNI	CTCAG	2 cut(s)	331, 343
BspFNI	CGCG	2 cut(s)	68, 897
BspQI	GCTCTTC	1 cut(s)	130
BspTI	CTTAAG	1 cut(s)	629
BsrBI	CCGCTC	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	1 cut(s)	803
BssAI	RCCGGY	1 cut(s)	803
BssMI	GATC	2 cut(s)	892, 906
BssNAI	GTATAC	1 cut(s)	868
BssNI	GRCGYC	1 cut(s)	173
Bst1107I	GTATAC	1 cut(s)	868
Bst4CI	ACNGT	1 cut(s)	865
Bst6I	CTCTTC	3 cut(s)	130, 198, 242
BstACI	GRCGYC	1 cut(s)	173
BstAFI	CTTAAG	1 cut(s)	629
BstAPI	GCANNNNNTGC	1 cut(s)	595
BstC8I	GCNNGC	2 cut(s)	429, 889
BstDEI	CTNAG	3 cut(s)	74, 318, 351
BstEII	GGTNACC	1 cut(s)	799
BstENI	CCTNNNNNAGG	1 cut(s)	840
BstF5I	GGATG	1 cut(s)	880
BstFNI	CGCG	2 cut(s)	68, 897
BstHHI	GCGC	2 cut(s)	70, 214
BstKTI	GATC	2 cut(s)	895, 909
BstMAI	GTCTC	3 cut(s)	200, 321, 431
BstMBI	GATC	2 cut(s)	892, 906
BstMCI	CGRYCG	1 cut(s)	895
BstMWI	GCNNNNNNNGC	6 cut(s)	120, 328, 569, 595, 823, 832
BstNSI	RCATGY	1 cut(s)	493
BstPI	GGTNACC	1 cut(s)	799
BstSFI	CTRYAG	1 cut(s)	376
BstSLI	GKGCMC	1 cut(s)	765
BstUI	CGCG	2 cut(s)	68, 897
BstV1I	GCAGC	3 cut(s)	101, 226, 610
BstZ17I	GTATAC	1 cut(s)	868
Bsu36I	CCTNAGG	1 cut(s)	351
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	4 cut(s)	427, 512, 783, 817
BtsCI	GGATG	1 cut(s)	880
Cac8I	GCNNGC	2 cut(s)	429, 889
CfoI	GCGC	2 cut(s)	70, 214
Cfr10I	RCCGGY	1 cut(s)	803
Cfr13I	GGNCC	3 cut(s)	388, 782, 816
CseI	GACGC	2 cut(s)	181, 578
CspAI	ACCGGT	1 cut(s)	803
CviAII	CATG	2 cut(s)	400, 490
DdeI	CTNAG	3 cut(s)	74, 318, 351
DpnI	GATC	2 cut(s)	894, 908
DpnII	GATC	2 cut(s)	892, 906
Eam1104I	CTCTTC	3 cut(s)	130, 198, 242
EarI	CTCTTC	3 cut(s)	130, 198, 242
EciI	GGCGGA	2 cut(s)	87, 894
Eco147I	AGGCCT	1 cut(s)	512
Eco47I	GGWCC	1 cut(s)	388
Eco57I	CTGAAG	2 cut(s)	111, 858
Eco81I	CCTNAGG	1 cut(s)	351
Eco91I	GGTNACC	1 cut(s)	799
EcoNI	CCTNNNNNAGG	1 cut(s)	840
EcoO65I	GGTNACC	1 cut(s)	799
EcoT22I	ATGCAT	1 cut(s)	749
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	2 cut(s)	403, 493
FalI	AAGNNNNNCTT	2 cut(s)	647, 679
FatI	CATG	2 cut(s)	399, 489
FauI	CCCGC	1 cut(s)	890
FblI	GTMKAC	1 cut(s)	867
Fnu4HI	GCNGC	5 cut(s)	71, 115, 159, 215, 599
FokI	GGATG	1 cut(s)	887
Fsp4HI	GCNGC	5 cut(s)	71, 115, 159, 215, 599
GlaI	GCGC	2 cut(s)	69, 213
GluI	GCNGC	5 cut(s)	71, 115, 159, 215, 599
GsaI	CCCAGC	1 cut(s)	158
HaeIII	GGCC	4 cut(s)	427, 512, 783, 817
HapII	CCGG	2 cut(s)	233, 804
HgaI	GACGC	2 cut(s)	181, 578
HhaI	GCGC	2 cut(s)	70, 214
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	403, 493
Hin6I	GCGC	2 cut(s)	68, 212
HinP1I	GCGC	2 cut(s)	68, 212
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HpaII	CCGG	2 cut(s)	233, 804
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	4 cut(s)	222, 397, 763, 868
Hpy188I	TCNGA	1 cut(s)	696
Hpy8I	GTNNAC	4 cut(s)	222, 397, 763, 868
HpyAV	CCTTC	8 cut(s)	61, 90, 104, 143, 186, 246, 502, 652
HpyCH4III	ACNGT	1 cut(s)	865
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	6 cut(s)	493, 589, 598, 668, 747, 763
HpyF10VI	GCNNNNNNNGC	6 cut(s)	120, 328, 569, 595, 823, 832
HpyF3I	CTNAG	3 cut(s)	74, 318, 351
HpySE526I	ACGT	1 cut(s)	224
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	403, 493
HspAI	GCGC	2 cut(s)	68, 212
Kzo9I	GATC	2 cut(s)	892, 906
LguI	GCTCTTC	1 cut(s)	130
LmnI	GCTCC	2 cut(s)	298, 643
Lsp1109I	GCAGC	3 cut(s)	101, 226, 610
LweI	GCATC	1 cut(s)	874
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	607, 799
MalI	GATC	2 cut(s)	894, 908
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	2 cut(s)	892, 906
MboII	GAAGA	5 cut(s)	117, 215, 259, 694, 764
MfeI	CAATTG	1 cut(s)	293
MhlI	GDGCHC	2 cut(s)	765, 828
MluCI	AATT	6 cut(s)	293, 527, 537, 768, 918, 931
Mph1103I	ATGCAT	1 cut(s)	749
MroXI	GAANNNNTTC	1 cut(s)	539
MseI	TTAA	7 cut(s)	312, 342, 413, 630, 792, 848, 934
MspA1I	CMGCKG	1 cut(s)	217
MspCI	CTTAAG	1 cut(s)	629
MspI	CCGG	2 cut(s)	233, 804
MunI	CAATTG	1 cut(s)	293
MvnI	CGCG	2 cut(s)	68, 897
MwoI	GCNNNNNNNGC	6 cut(s)	120, 328, 569, 595, 823, 832
NdeII	GATC	2 cut(s)	892, 906
NlaIII	CATG	2 cut(s)	403, 493
NsiI	ATGCAT	1 cut(s)	749
NspI	RCATGY	1 cut(s)	493
PceI	AGGCCT	1 cut(s)	512
PciSI	GCTCTTC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	539
PflFI	GACNNNGTC	1 cut(s)	392
PinAI	ACCGGT	1 cut(s)	803
PkrI	GCNGC	5 cut(s)	72, 116, 160, 216, 600
Ple19I	CGATCG	1 cut(s)	895
PspEI	GGTNACC	1 cut(s)	799
PspFI	CCCAGC	1 cut(s)	154
PspPI	GGNCC	3 cut(s)	388, 782, 816
PsyI	GACNNNGTC	1 cut(s)	392
PvuI	CGATCG	1 cut(s)	895
RgaI	GCGATCGC	1 cut(s)	895
SapI	GCTCTTC	1 cut(s)	130
SaqAI	TTAA	7 cut(s)	312, 342, 413, 630, 792, 848, 934
SatI	GCNGC	5 cut(s)	71, 115, 159, 215, 599
Sau3AI	GATC	2 cut(s)	892, 906
Sau96I	GGNCC	3 cut(s)	388, 782, 816
SduI	GDGCHC	2 cut(s)	765, 828
SfaAI	GCGATCGC	1 cut(s)	895
SfaNI	GCATC	1 cut(s)	874
SfcI	CTRYAG	1 cut(s)	376
SgfI	GCGATCGC	1 cut(s)	895
SinI	GGWCC	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	6 cut(s)	293, 527, 537, 768, 918, 931
SseBI	AGGCCT	1 cut(s)	512
SsiI	CCGC	8 cut(s)	71, 98, 121, 159, 217, 469, 879, 897
StuI	AGGCCT	1 cut(s)	512
TaaI	ACNGT	1 cut(s)	865
TaiI	ACGT	1 cut(s)	227
TasI	AATT	6 cut(s)	293, 527, 537, 768, 918, 931
TauI	GCSGC	2 cut(s)	73, 161
Tru1I	TTAA	7 cut(s)	312, 342, 413, 630, 792, 848, 934
Tru9I	TTAA	7 cut(s)	312, 342, 413, 630, 792, 848, 934
TseI	GCWGC	3 cut(s)	114, 214, 598
TspDTI	ATGAA	3 cut(s)	349, 416, 927
TspGWI	ACGGA	1 cut(s)	215
Tth111I	GACNNNGTC	1 cut(s)	392
Vha464I	CTTAAG	1 cut(s)	629
VneI	GTGCAC	1 cut(s)	761
VpaK11BI	GGWCC	1 cut(s)	388
XagI	CCTNNNNNAGG	1 cut(s)	840
XapI	RAATTY	1 cut(s)	537
XceI	RCATGY	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	867
XmnI	GAANNNNTTC	1 cut(s)	539
Zsp2I	ATGCAT	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.