Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011295

Physical Location & Seq

Genomic Coordinates Reverse (-)

187608 .. 190369

Gene Structure 2762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGATAAAACTACTATTTACGTACATATGCACATACACATATAAACTATATGCTCTATATCATATGGATTACGCATGCGTGTGTATGTATAAATATAAAGGCATCGTCACGCTTCAAGTTTGTCTCTTTTATATTAAACTGAGAGTTTTCCTCTCAAACTTTACCTTTTCTTCTTCGATCCTAGCTCTTAAGAACCCTAATAATTCATTGATCAAAATAATGGCGATTTTGCCGGAAAACTCTTCAAACTTGGATCTTACTATCTCCGTTCCAGGCTTCTCTTCATCCCCTCTCTCCGATGAAGGAAGTGGCGGAGGAAGAGACCAGCTAAGGCTAGACATGAATCGGTTACCGTCGTCTGAAGACGGAGACGATGAAGAATTCAGTCACGATGATGGCTCTGCTCCTCCGCGAAAGAAACTCCGTCTAACCAGAGAACAGTCACGTCTTCTTGAAGATAGTTTCAGACAGAATCATACCCTTAATCCCAAACAAAAGGAAGTACTTGCCAAGCATTTGATGCTACGGCCAAGACAAATTGAAGTTTGGTTTCAAAACCGTAGAGCAAGGAGCAAATTGAAGCAAACCGAGATGGAATGCGAGTATCTCAAAAGGTGGTTTGGTTCATTAACGGAAGAAAACCACAGGCTCCATAGAGAAGTAGAAGAGCTTAGAGCCATGAAGGTTGGCCCAACAACGGTGAACTCTGCCTCGAGCCTTACTATGTGTCCTCGCTGCGAGCGAGTTACCCCTGCCGCGAGCCCTTCGAGGGCGGTGGTGCCGGTTCCGGCTAAGAAAACGTTTCCGCCGCAAGAGCGTGATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

275

Amino Acids

31.69

Weight (kDa)

9.27

Isoelectric Point (pI)

64.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	138 - 190	6.7e-15	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70920 AT1G70920 AT2G01430 AT2G01430
fragaria_vesca	FvH4_4g32460
malus_domestica	MD13G1025200.v1.1 MD16G1027800.v1.1
prunus_persica	Prupe.1G325000_v2.0.a1 Prupe.1G325000_v2.0.a1
pyrus_communis	pycom13g02360 pycom16g02350
rosa_chinensis	RchiOBHm_Chr4g0441321
rosa_laevigata	RLG00000006102
rosa_multiflora	Rmu_sc0012909.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382210
rosa_samantha	Rh4AG384300 Rh4BG398400 Rh4CG413500 Rh4DG391000
rosa_wichuraiana	Rw4G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	778
AccII	CGCG	2 cut(s)	412, 758
AciI	CCGC	6 cut(s)	312, 410, 756, 773, 806, 809
AclI	AACGTT	1 cut(s)	800
AclWI	GGATC	2 cut(s)	172, 261
AcoI	YGGCCR	1 cut(s)	527
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	2 cut(s)	23, 504
AfiI	CCNNNNNNNGG	2 cut(s)	697, 769
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	6 cut(s)	116, 246, 455, 542, 554, 580
AjiI	CACGTC	1 cut(s)	446
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	3 cut(s)	185, 328, 670
AluI	AGCT	3 cut(s)	185, 328, 670
Alw26I	GTCTC	3 cut(s)	128, 315, 363
AlwI	GGATC	2 cut(s)	172, 261
Ama87I	CYCGRG	1 cut(s)	712
AoxI	GGCC	2 cut(s)	527, 688
ApeKI	GCWGC	1 cut(s)	735
ApoI	RAATTY	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	1 cut(s)	712
AvaI	CYCGRG	1 cut(s)	712
BanI	GGYRCC	1 cut(s)	778
BanII	GRGCYC	1 cut(s)	764
BbsI	GAAGAC	2 cut(s)	369, 440
BbvI	GCAGC	1 cut(s)	722
BccI	CCATC	2 cut(s)	389, 586
BceAI	ACGGC	1 cut(s)	542
BciT130I	CCWGG	1 cut(s)	273
BclI	TGATCA	1 cut(s)	210
BcoDI	GTCTC	3 cut(s)	128, 315, 363
BfaI	CTAG	2 cut(s)	182, 335
BfrI	CTTAAG	1 cut(s)	188
BisI	GCNGC	3 cut(s)	736, 756, 809
BlsI	GCNGC	3 cut(s)	737, 757, 810
BmcAI	AGTACT	1 cut(s)	504
Bme1390I	CCNGG	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	712
BmgBI	CACGTC	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	3 cut(s)	650, 780, 786
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	2 cut(s)	111, 510
BpiI	GAAGAC	2 cut(s)	369, 440
BplI	GAGNNNNNCTC	2 cut(s)	135, 167
Bpu10I	CCTNAGC	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	2 cut(s)	697, 769
Bse118I	RCCGGY	1 cut(s)	781
BseBI	CCWGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	2 cut(s)	697, 769
BseMII	CTCAG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	722
Bsh1236I	CGCG	2 cut(s)	412, 758
BshFI	GGCC	2 cut(s)	529, 690
BshNI	GGYRCC	1 cut(s)	778
BsiHKCI	CYCGRG	1 cut(s)	712
BsiSI	CCGG	3 cut(s)	233, 782, 788
BslI	CCNNNNNNNGG	2 cut(s)	697, 769
BsmAI	GTCTC	3 cut(s)	128, 315, 363
BsmBI	CGTCTC	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	2 cut(s)	529, 690
Bso31I	GGTCTC	1 cut(s)	315
BsoBI	CYCGRG	1 cut(s)	712
Bsp1286I	GDGCHC	1 cut(s)	764
Bsp143I	GATC	4 cut(s)	177, 210, 253, 820
BspACI	CCGC	6 cut(s)	312, 410, 756, 773, 806, 809
BspANI	GGCC	2 cut(s)	529, 690
BspCNI	CTCAG	1 cut(s)	132
BspFNI	CGCG	2 cut(s)	412, 758
BspLI	GGNNCC	3 cut(s)	650, 780, 786
BspPI	GGATC	2 cut(s)	172, 261
BspQI	GCTCTTC	1 cut(s)	660
BspT107I	GGYRCC	1 cut(s)	778
BspTI	CTTAAG	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	781
BssAI	RCCGGY	1 cut(s)	781
BssMI	GATC	4 cut(s)	177, 210, 253, 820
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	4 cut(s)	354, 441, 560, 700
Bst6I	CTCTTC	4 cut(s)	247, 286, 313, 660
BstAFI	CTTAAG	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	21
BstC8I	GCNNGC	3 cut(s)	76, 740, 760
BstDEI	CTNAG	4 cut(s)	140, 329, 671, 792
BstEII	GGTNACC	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	284
BstFNI	CGCG	2 cut(s)	412, 758
BstKTI	GATC	4 cut(s)	180, 213, 256, 823
BstMAI	GTCTC	3 cut(s)	128, 315, 363
BstMBI	GATC	4 cut(s)	177, 210, 253, 820
BstMWI	GCNNNNNNNGC	2 cut(s)	520, 814
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	78
BstPI	GGTNACC	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	271
BstSNI	TACGTA	1 cut(s)	21
BstUI	CGCG	2 cut(s)	412, 758
BstV1I	GCAGC	1 cut(s)	722
BstV2I	GAAGAC	2 cut(s)	369, 440
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	529, 690
BtrI	CACGTC	1 cut(s)	446
BtsCI	GGATG	1 cut(s)	284
Cac8I	GCNNGC	3 cut(s)	76, 740, 760
Cfr10I	RCCGGY	1 cut(s)	781
Cfr13I	GGNCC	1 cut(s)	689
Csp6I	GTAC	2 cut(s)	22, 503
CviAII	CATG	3 cut(s)	75, 340, 679
CviQI	GTAC	2 cut(s)	22, 503
DdeI	CTNAG	4 cut(s)	140, 329, 671, 792
DpnI	GATC	4 cut(s)	179, 212, 255, 822
DpnII	GATC	4 cut(s)	177, 210, 253, 820
EaeI	YGGCCR	1 cut(s)	527
Eam1104I	CTCTTC	4 cut(s)	247, 286, 313, 660
EarI	CTCTTC	4 cut(s)	247, 286, 313, 660
EciI	GGCGGA	2 cut(s)	327, 795
Eco105I	TACGTA	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	764
Eco31I	GGTCTC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	712
Eco91I	GGTNACC	1 cut(s)	348
EcoO65I	GGTNACC	1 cut(s)	348
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	764
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	3 cut(s)	78, 343, 682
FatI	CATG	3 cut(s)	74, 339, 678
FauNDI	CATATG	2 cut(s)	26, 63
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	3 cut(s)	736, 756, 809
FokI	GGATG	1 cut(s)	271
FriOI	GRGCYC	1 cut(s)	764
Fsp4HI	GCNGC	3 cut(s)	736, 756, 809
FspBI	CTAG	2 cut(s)	182, 335
GluI	GCNGC	3 cut(s)	736, 756, 809
HaeIII	GGCC	2 cut(s)	529, 690
HapII	CCGG	3 cut(s)	233, 782, 788
Hin1II	CATG	3 cut(s)	78, 343, 682
HinfI	GANTC	2 cut(s)	343, 472
HpaII	CCGG	3 cut(s)	233, 782, 788
HphI	GGTGA	1 cut(s)	712
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	3 cut(s)	298, 361, 467
Hpy188III	TCNNGA	2 cut(s)	389, 452
Hpy8I	GTNNAC	1 cut(s)	703
Hpy99I	CGWCG	1 cut(s)	358
HpyAV	CCTTC	3 cut(s)	296, 676, 774
HpyCH4III	ACNGT	4 cut(s)	354, 441, 560, 700
HpyCH4IV	ACGT	3 cut(s)	20, 445, 800
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	2 cut(s)	520, 814
HpyF3I	CTNAG	4 cut(s)	140, 329, 671, 792
HpySE526I	ACGT	3 cut(s)	20, 445, 800
Hsp92II	CATG	3 cut(s)	78, 343, 682
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	4 cut(s)	177, 210, 253, 820
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	3 cut(s)	409, 570, 654
LpnPI	CCDG	9 cut(s)	246, 258, 285, 338, 445, 631, 765, 795, 801
Lsp1109I	GCAGC	1 cut(s)	722
LweI	GCATC	2 cut(s)	111, 510
MaeI	CTAG	2 cut(s)	182, 335
MaeII	ACGT	3 cut(s)	20, 445, 800
MaeIII	GTNAC	5 cut(s)	106, 348, 386, 441, 745
MalI	GATC	4 cut(s)	179, 212, 255, 822
MboI	GATC	4 cut(s)	177, 210, 253, 820
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	764
MluCI	AATT	4 cut(s)	202, 380, 537, 575
MnlI	CCTC	7 cut(s)	161, 300, 308, 417, 721, 741, 762
MseI	TTAA	4 cut(s)	135, 189, 483, 629
MslI	CAYNNNNRTG	2 cut(s)	79, 393
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	3 cut(s)	233, 782, 788
MspR9I	CCNGG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	2 cut(s)	412, 758
MwoI	GCNNNNNNNGC	2 cut(s)	520, 814
NdeI	CATATG	2 cut(s)	26, 63
NdeII	GATC	4 cut(s)	177, 210, 253, 820
NlaIII	CATG	3 cut(s)	78, 343, 682
NlaIV	GGNNCC	3 cut(s)	650, 780, 786
NmuCI	GTSAC	3 cut(s)	106, 386, 441
NspI	RCATGY	1 cut(s)	78
PaeI	GCATGC	1 cut(s)	78
PaeR7I	CTCGAG	1 cut(s)	712
PciSI	GCTCTTC	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	1 cut(s)	739
PctI	GAATGC	1 cut(s)	602
PfeI	GAWTC	2 cut(s)	343, 472
PkrI	GCNGC	3 cut(s)	737, 757, 810
Ppu21I	YACGTR	1 cut(s)	21
Psp1406I	AACGTT	1 cut(s)	800
Psp6I	CCWGG	1 cut(s)	271
PspEI	GGTNACC	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	3 cut(s)	650, 780, 786
PspPI	GGNCC	1 cut(s)	689
PspXI	VCTCGAGB	1 cut(s)	712
PsuI	RGATCY	1 cut(s)	253
RsaI	GTAC	2 cut(s)	23, 504
RsaNI	GTAC	2 cut(s)	22, 503
RseI	CAYNNNNRTG	2 cut(s)	79, 393
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	4 cut(s)	135, 189, 483, 629
SatI	GCNGC	3 cut(s)	736, 756, 809
Sau3AI	GATC	4 cut(s)	177, 210, 253, 820
Sau96I	GGNCC	1 cut(s)	689
ScaI	AGTACT	1 cut(s)	504
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	764
SetI	ASST	9 cut(s)	23, 167, 187, 330, 448, 617, 672, 687, 803
SfaNI	GCATC	2 cut(s)	111, 510
Sfr274I	CTCGAG	1 cut(s)	712
SlaI	CTCGAG	1 cut(s)	712
SmiMI	CAYNNNNRTG	2 cut(s)	79, 393
SmlI	CTYRAG	2 cut(s)	188, 712
SmoI	CTYRAG	2 cut(s)	188, 712
SnaBI	TACGTA	1 cut(s)	21
SphI	GCATGC	1 cut(s)	78
Sse9I	AATT	4 cut(s)	202, 380, 537, 575
SsiI	CCGC	6 cut(s)	312, 410, 756, 773, 806, 809
SspMI	CTAG	2 cut(s)	182, 335
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	4 cut(s)	354, 441, 560, 700
TaiI	ACGT	3 cut(s)	23, 448, 803
TaqI	TCGA	3 cut(s)	176, 713, 767
TasI	AATT	4 cut(s)	202, 380, 537, 575
TatI	WGTACW	1 cut(s)	502
TauI	GCSGC	2 cut(s)	758, 811
TfiI	GAWTC	2 cut(s)	343, 472
Tru1I	TTAA	4 cut(s)	135, 189, 483, 629
Tru9I	TTAA	4 cut(s)	135, 189, 483, 629
TseFI	GTSAC	3 cut(s)	106, 386, 441
TseI	GCWGC	1 cut(s)	735
Tsp45I	GTSAC	3 cut(s)	106, 386, 441
TspDTI	ATGAA	7 cut(s)	195, 273, 315, 356, 390, 615, 695
TspGWI	ACGGA	4 cut(s)	256, 381, 413, 647
Vha464I	CTTAAG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	1 cut(s)	78
XhoI	CTCGAG	1 cut(s)	712
XspI	CTAG	2 cut(s)	182, 335
ZrmI	AGTACT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.