Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011295

Physical Location & Seq

Genomic Coordinates Forward (+)

1775637 .. 1778430

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1025200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCGGTTTTACCGACGGCGATGGGATCGTCGAGCTTGGAGTTGACTATATCCGTACCTGGCTTCTCTTCGTACCCGTCTTTTCCTAATTCATCTGTGAGAGACTTGGACATAAACCAAATACCATCACTACAAGGAGATCAAGAAGAATGGATGACAGCGGGCATGGAAGACGAAGAAGAAAGCAGCAACGGATCGGGTCCTCCCCGCAAGAAGCTTCGTCTCACAAAGGAACAGTCTCGTCTTCTCGAAGAGAGCTTCAGACAAAACCACACCTTGAACCCTAAACAGAAAGAGGCGTTGGCGATGCAGTTGAAGCTGAGGCCACGCCAGGTCGAGGTGTGGTTTCAAAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACAGAGATGGAATGCGAGTATCTGAAGAGATGGTTCGGATCGCTGACTGAACAGAACAGGCGGCTGCAAAAGGAGGTGGAGGAGCTGAGGGCAATGAAAGTCAGCCCGCCCACCGTGCTTTACCCCCACAGTTGCGACCCTCTTCCGGCATCCACACTCACCATGTGCCCTCGTTGCGAGCGAGTCACCACCACCACCACTCCCGACAGGAACAGGGGCGGCGGGCCAACCAAGACTAATAATATCCCGGCCACCGCGGCCCCAACCTTGTCCACTAAAGTGGCGACGCCTGCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

227

Amino Acids

25.4

Weight (kDa)

9.09

Isoelectric Point (pI)

66.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	70 - 124	1.4e-16	Homeodomain
HALZ	PF02183	126 - 160	1.9e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70920 AT1G70920 AT2G01430 AT2G01430
fragaria_vesca	FvH4_4g32460
malus_domestica	MD13G1025200.v1.1 MD16G1027800.v1.1
prunus_persica	Prupe.1G325000_v2.0.a1 Prupe.1G325000_v2.0.a1
pyrus_communis	pycom13g02360 pycom16g02350
rosa_chinensis	RchiOBHm_Chr4g0441321
rosa_laevigata	RLG00000006102
rosa_multiflora	Rmu_sc0012909.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382210
rosa_samantha	Rh4AG384300 Rh4BG398400 Rh4CG413500 Rh4DG391000
rosa_wichuraiana	Rw4G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	638
AciI	CCGC	9 cut(s)	5, 161, 208, 442, 488, 600, 603, 636, 638
AclWI	GGATC	3 cut(s)	34, 202, 427
AcoI	YGGCCR	1 cut(s)	630
AcuI	CTGAAG	3 cut(s)	244, 395, 425
AcyI	GRCGYC	1 cut(s)	668
AdeI	CACNNNGTG	1 cut(s)	546
AfaI	GTAC	2 cut(s)	57, 74
AfiI	CCNNNNNNNGG	2 cut(s)	337, 526
AgsI	TTSAA	3 cut(s)	280, 316, 350
AjnI	CCWGG	3 cut(s)	58, 330, 362
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AleI	CACNNNNGTG	1 cut(s)	659
AluBI	AGCT	6 cut(s)	36, 217, 258, 319, 373, 466
AluI	AGCT	6 cut(s)	36, 217, 258, 319, 373, 466
Alw26I	GTCTC	3 cut(s)	96, 227, 243
AlwI	GGATC	3 cut(s)	34, 202, 427
AoxI	GGCC	5 cut(s)	323, 360, 605, 630, 639
ApeKI	GCWGC	2 cut(s)	186, 445
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspS9I	GGNCC	4 cut(s)	200, 360, 605, 640
AsuC2I	CCSGG	1 cut(s)	629
AsuHPI	GGTGA	2 cut(s)	532, 559
AvaII	GGWCC	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	551
BbsI	GAAGAC	2 cut(s)	177, 236
BbvCI	CCTCAGC	2 cut(s)	320, 467
BbvI	GCAGC	2 cut(s)	198, 432
BccI	CCATC	4 cut(s)	16, 133, 382, 405
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	3 cut(s)	60, 332, 364
BcnI	CCSGG	1 cut(s)	629
BcoDI	GTCTC	3 cut(s)	96, 227, 243
BglI	GCCNNNNNGGC	1 cut(s)	638
BisI	GCNGC	5 cut(s)	187, 443, 446, 601, 639
BlsI	GCNGC	5 cut(s)	188, 444, 447, 602, 640
Bme1390I	CCNGG	4 cut(s)	60, 332, 364, 629
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	4 cut(s)	200, 360, 605, 640
BmiI	GGNNCC	2 cut(s)	201, 642
BmrFI	CCNGG	4 cut(s)	60, 332, 364, 629
BmsI	GCATC	2 cut(s)	297, 539
BpiI	GAAGAC	2 cut(s)	177, 236
Bpu10I	CCTNAGC	2 cut(s)	320, 467
BpuMI	CCSGG	1 cut(s)	629
BsaHI	GRCGYC	1 cut(s)	668
BsaJI	CCNNGG	1 cut(s)	636
BsaXI	ACNNNNNCTCC	2 cut(s)	565, 595
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 526
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	3 cut(s)	60, 332, 364
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	2 cut(s)	159, 530
BseLI	CCNNNNNNNGG	2 cut(s)	337, 526
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	2 cut(s)	311, 458
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	198, 432
Bsh1236I	CGCG	1 cut(s)	638
BshFI	GGCC	5 cut(s)	325, 362, 607, 632, 641
BsiSI	CCGG	2 cut(s)	527, 629
BslI	CCNNNNNNNGG	2 cut(s)	337, 526
BsmAI	GTCTC	3 cut(s)	96, 227, 243
BsmBI	CGTCTC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	5 cut(s)	325, 362, 607, 632, 641
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp143I	GATC	4 cut(s)	26, 139, 194, 419
BspACI	CCGC	9 cut(s)	5, 161, 208, 442, 488, 600, 603, 636, 638
BspANI	GGCC	5 cut(s)	325, 362, 607, 632, 641
BspCNI	CTCAG	2 cut(s)	312, 459
BspFNI	CGCG	1 cut(s)	638
BspLI	GGNNCC	2 cut(s)	201, 642
BspPI	GGATC	3 cut(s)	34, 202, 427
BsrDI	GCAATG	1 cut(s)	480
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	4 cut(s)	26, 139, 194, 419
BssNI	GRCGYC	1 cut(s)	668
Bst2UI	CCWGG	3 cut(s)	60, 332, 364
Bst4CI	ACNGT	3 cut(s)	237, 496, 512
Bst6I	CTCTTC	4 cut(s)	73, 246, 401, 528
BstACI	GRCGYC	1 cut(s)	668
BstC8I	GCNNGC	6 cut(s)	163, 371, 488, 560, 605, 672
BstDEI	CTNAG	2 cut(s)	320, 467
BstDSI	CCRYGG	1 cut(s)	636
BstF5I	GGATG	2 cut(s)	159, 530
BstFNI	CGCG	1 cut(s)	638
BstKTI	GATC	4 cut(s)	29, 142, 197, 422
BstMAI	GTCTC	3 cut(s)	96, 227, 243
BstMBI	GATC	4 cut(s)	26, 139, 194, 419
BstMWI	GCNNNNNNNGC	5 cut(s)	316, 496, 555, 638, 671
BstNI	CCWGG	3 cut(s)	60, 332, 364
BstSCI	CCNGG	4 cut(s)	58, 330, 362, 627
BstSLI	GKGCMC	1 cut(s)	551
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	2 cut(s)	198, 432
BstV2I	GAAGAC	2 cut(s)	177, 236
BstXI	CCANNNNNNTGG	1 cut(s)	661
BsuRI	GGCC	5 cut(s)	325, 362, 607, 632, 641
BtgI	CCRYGG	1 cut(s)	636
BtgZI	GCGATG	2 cut(s)	35, 320
BtsCI	GGATG	2 cut(s)	159, 530
Cac8I	GCNNGC	6 cut(s)	163, 371, 488, 560, 605, 672
Cfr13I	GGNCC	4 cut(s)	200, 360, 605, 640
Cfr42I	CCGCGG	1 cut(s)	639
CseI	GACGC	1 cut(s)	676
Csp6I	GTAC	2 cut(s)	56, 73
CviAII	CATG	2 cut(s)	166, 544
CviQI	GTAC	2 cut(s)	56, 73
DdeI	CTNAG	2 cut(s)	320, 467
DpnI	GATC	4 cut(s)	28, 141, 196, 421
DpnII	GATC	4 cut(s)	26, 139, 194, 419
DraIII	CACNNNGTG	1 cut(s)	546
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	4 cut(s)	73, 246, 401, 528
EarI	CTCTTC	4 cut(s)	73, 246, 401, 528
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	3 cut(s)	244, 395, 425
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRII	CCWGG	3 cut(s)	58, 330, 362
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	2 cut(s)	169, 547
FaiI	YATR	4 cut(s)	50, 113, 167, 545
FatI	CATG	2 cut(s)	165, 543
FauI	CCCGC	4 cut(s)	154, 215, 495, 596
Fnu4HI	GCNGC	5 cut(s)	187, 443, 446, 601, 639
FokI	GGATG	2 cut(s)	166, 517
Fsp4HI	GCNGC	5 cut(s)	187, 443, 446, 601, 639
GluI	GCNGC	5 cut(s)	187, 443, 446, 601, 639
HaeIII	GGCC	5 cut(s)	325, 362, 607, 632, 641
HapII	CCGG	2 cut(s)	527, 629
HgaI	GACGC	1 cut(s)	676
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	2 cut(s)	169, 547
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	1 cut(s)	564
HpaII	CCGG	2 cut(s)	527, 629
HphI	GGTGA	2 cut(s)	532, 559
Hpy166II	GTNNAC	2 cut(s)	45, 654
Hpy188I	TCNGA	3 cut(s)	263, 405, 419
Hpy188III	TCNNGA	3 cut(s)	143, 248, 584
Hpy8I	GTNNAC	2 cut(s)	45, 654
Hpy99I	CGWCG	3 cut(s)	19, 34, 670
HpyCH4III	ACNGT	3 cut(s)	237, 496, 512
HpyCH4V	TGCA	2 cut(s)	310, 448
HpyF10VI	GCNNNNNNNGC	5 cut(s)	316, 496, 555, 638, 671
HpyF3I	CTNAG	2 cut(s)	320, 467
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	2 cut(s)	169, 547
KspI	CCGCGG	1 cut(s)	639
Kzo9I	GATC	4 cut(s)	26, 139, 194, 419
LmnI	GCTCC	2 cut(s)	366, 463
Lsp1109I	GCAGC	2 cut(s)	198, 432
LweI	GCATC	2 cut(s)	297, 539
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	4 cut(s)	28, 141, 196, 421
MboI	GATC	4 cut(s)	26, 139, 194, 419
MboII	GAAGA	9 cut(s)	60, 158, 182, 188, 191, 236, 263, 418, 515
MhlI	GDGCHC	1 cut(s)	551
MluCI	AATT	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	573
MnlI	CCTC	9 cut(s)	213, 289, 315, 331, 448, 454, 462, 531, 561
MslI	CAYNNNNRTG	1 cut(s)	659
MspA1I	CMGCKG	2 cut(s)	161, 638
MspI	CCGG	2 cut(s)	527, 629
MspR9I	CCNGG	4 cut(s)	60, 332, 364, 629
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	3 cut(s)	60, 332, 364
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	5 cut(s)	316, 496, 555, 638, 671
NciI	CCSGG	1 cut(s)	629
NdeII	GATC	4 cut(s)	26, 139, 194, 419
NlaIII	CATG	2 cut(s)	169, 547
NlaIV	GGNNCC	2 cut(s)	201, 642
NmuCI	GTSAC	1 cut(s)	565
OliI	CACNNNNGTG	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	1 cut(s)	559
PctI	GAATGC	1 cut(s)	398
PkrI	GCNGC	5 cut(s)	188, 444, 447, 602, 640
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
PpuMI	RGGWCCY	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	200
Psp6I	CCWGG	3 cut(s)	58, 330, 362
PspGI	CCWGG	3 cut(s)	58, 330, 362
PspN4I	GGNNCC	2 cut(s)	201, 642
PspPI	GGNCC	4 cut(s)	200, 360, 605, 640
PspPPI	RGGWCCY	1 cut(s)	200
RsaI	GTAC	2 cut(s)	57, 74
RsaNI	GTAC	2 cut(s)	56, 73
RseI	CAYNNNNRTG	1 cut(s)	659
SacII	CCGCGG	1 cut(s)	639
SatI	GCNGC	5 cut(s)	187, 443, 446, 601, 639
Sau3AI	GATC	4 cut(s)	26, 139, 194, 419
Sau96I	GGNCC	4 cut(s)	200, 360, 605, 640
SchI	GAGTC	1 cut(s)	573
ScrFI	CCNGG	4 cut(s)	60, 332, 364, 629
SduI	GDGCHC	1 cut(s)	551
SfaNI	GCATC	2 cut(s)	297, 539
SfiI	GGCCNNNNNGGCC	1 cut(s)	638
Sfr303I	CCGCGG	1 cut(s)	639
SgrBI	CCGCGG	1 cut(s)	639
SinI	GGWCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	659
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	9 cut(s)	5, 161, 208, 442, 488, 600, 603, 636, 638
StyD4I	CCNGG	4 cut(s)	58, 330, 362, 627
TaaI	ACNGT	3 cut(s)	237, 496, 512
TaqI	TCGA	3 cut(s)	32, 249, 336
TasI	AATT	1 cut(s)	88
TauI	GCSGC	3 cut(s)	445, 603, 641
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	2 cut(s)	186, 445
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	2 cut(s)	81, 491
TspGWI	ACGGA	2 cut(s)	43, 207
VpaK11BI	GGWCC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.