Rh4BG398400

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0011295
Physical Location & Seq
Reverse (-)
54929468 .. 54931835
2368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG398400.1

Sequence Viewer

Length: 627 bp
ATGGCGAGCTTGGAGTTGACTATGTCTGTTCCTGGCTTCTCTTCCTACCCATCTCTTCCTTCCTCTGTGAGGAACTTGGACATAAACCAAGTACCATTGGCACAAAGACCAGATCAAGAAGAAATACTGGAGGACGAAGAAGATAGCAGCAACGGGTCGGGCGGCCCGCCCCGGAAGAAGCTCCGTCTCACCAAGGAACAGTCCCGTCTTCTCGAAGAGAGCTTCAGACAACACCACACCTTAAACCCCAGGCAGAAAGAGGCTTTGGCTTTGCAGTTGAAGCTGAGGCCACGCCAAGTTGAGGTGTGGTTTCAAAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACAGAGATGGAATGCGAGTATTTGAAGAGATGGTTCGGATCACTGACTGAACAGAATAGGAGGCTGCAGAGGGAGGTCGAAGAGCTGAGGGCCATGAAAGTTGGTCCACCAACTGTGATTTCCCCCCATACGTGCGAGCCTCTTCCGGCATCCACCCTCACTATGTGCCCTCGTTGCGAGCGAGTCACCACCACGTCCACAACCACCGGCCCTACAAAGACAAAAATCTCGGCCGCTGCCAACACCGCCTTGTCCTCTAAAGTGGCGACGCCCGCCCTCTAA

Protein Analysis

208

Amino Acids

23.47

Weight (kDa)

9.44

Isoelectric Point (pI)

66.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 58 - 112 1.3e-15 Homeodomain
HALZ PF02183 114 - 148 4.2e-10 Homeobox associated leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011295)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70920 AT1G70920 AT2G01430 AT2G01430
fragaria_vesca FvH4_4g32460
malus_domestica MD13G1025200.v1.1 MD16G1027800.v1.1
prunus_persica Prupe.1G325000_v2.0.a1 Prupe.1G325000_v2.0.a1
pyrus_communis pycom13g02360 pycom16g02350
rosa_chinensis RchiOBHm_Chr4g0441321
rosa_laevigata RLG00000006102
rosa_multiflora Rmu_sc0012909.1_g000002
rosa_roxburghii Rroxscaffold_5G00382210
rosa_samantha Rh4AG384300 Rh4BG398400 Rh4CG413500 Rh4DG391000
rosa_wichuraiana Rw4G033170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 162, 167, 579, 591, 618
AclWI GGATC 1 cut(s) 391
AcoI YGGCCR 1 cut(s) 576
AcuI CTGAAG 2 cut(s) 208, 359
AcyI GRCGYC 1 cut(s) 614
AdeI CACNNNGTG 1 cut(s) 510
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 2 cut(s) 69, 301
AgsI TTSAA 3 cut(s) 280, 314, 370
AjiI CACGTC 1 cut(s) 540
AjnI CCWGG 3 cut(s) 31, 248, 326
AjuI GAANNNNNNNTTGG 4 cut(s) 248, 280, 448, 480
AluBI AGCT 6 cut(s) 9, 181, 222, 283, 337, 430
AluI AGCT 6 cut(s) 9, 181, 222, 283, 337, 430
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 1 cut(s) 391
AoxI GGCC 6 cut(s) 163, 287, 324, 435, 553, 576
ApeKI GCWGC 3 cut(s) 147, 409, 581
AspS9I GGNCC 5 cut(s) 164, 324, 435, 449, 554
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 181, 523
AvaII GGWCC 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 515
BbsI GAAGAC 1 cut(s) 200
BbvCI CCTCAGC 2 cut(s) 284, 431
BbvI GCAGC 3 cut(s) 159, 396, 568
BccI CCATC 3 cut(s) 58, 346, 369
BciT130I CCWGG 3 cut(s) 33, 250, 328
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 410
BisI GCNGC 5 cut(s) 148, 163, 410, 579, 582
BlsI GCNGC 5 cut(s) 149, 164, 411, 580, 583
Bme1390I CCNGG 4 cut(s) 33, 172, 250, 328
Bme18I GGWCC 1 cut(s) 449
BmgBI CACGTC 1 cut(s) 540
BmgT120I GGNCC 5 cut(s) 164, 324, 435, 449, 554
BmrFI CCNGG 4 cut(s) 33, 172, 250, 328
BmsI GCATC 1 cut(s) 503
BpiI GAAGAC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 2 cut(s) 284, 431
BpuMI CCSGG 1 cut(s) 172
BsaAI YACGTR 1 cut(s) 477
BsaHI GRCGYC 1 cut(s) 614
BsaJI CCNNGG 3 cut(s) 170, 192, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 301
Bse118I RCCGGY 1 cut(s) 551
Bse1I ACTGG 1 cut(s) 132
BseBI CCWGG 3 cut(s) 33, 250, 328
BseDI CCNNGG 3 cut(s) 170, 192, 248
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 2 cut(s) 69, 301
BseMII CTCAG 2 cut(s) 275, 422
BseNI ACTGG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 515
BseX3I CGGCCG 1 cut(s) 576
BseXI GCAGC 3 cut(s) 159, 396, 568
Bsh1285I CGRYCG 1 cut(s) 579
BshFI GGCC 6 cut(s) 165, 289, 326, 437, 555, 578
BsiEI CGRYCG 1 cut(s) 579
BsiSI CCGG 3 cut(s) 172, 491, 552
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 2 cut(s) 69, 301
BsmAI GTCTC 1 cut(s) 191
BsmBI CGTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 187
BsmI GAATGC 1 cut(s) 362
BsnI GGCC 6 cut(s) 165, 289, 326, 437, 555, 578
Bsp1286I GDGCHC 1 cut(s) 515
Bsp143I GATC 2 cut(s) 112, 383
BspACI CCGC 5 cut(s) 162, 167, 579, 591, 618
BspANI GGCC 6 cut(s) 165, 289, 326, 437, 555, 578
BspCNI CTCAG 2 cut(s) 276, 423
BspMAI CTGCAG 1 cut(s) 414
BspPI GGATC 1 cut(s) 391
BspQI GCTCTTC 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 551
BsrI ACTGG 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 551
BssECI CCNNGG 3 cut(s) 170, 192, 248
BssMI GATC 2 cut(s) 112, 383
BssNI GRCGYC 1 cut(s) 614
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 3 cut(s) 33, 250, 328
Bst4CI ACNGT 2 cut(s) 201, 460
Bst6I CTCTTC 6 cut(s) 46, 60, 210, 365, 420, 492
BstACI GRCGYC 1 cut(s) 614
BstBAI YACGTR 1 cut(s) 477
BstC8I GCNNGC 6 cut(s) 7, 167, 335, 482, 524, 618
BstDEI CTNAG 2 cut(s) 284, 431
BstENI CCTNNNNNAGG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 494
BstKTI GATC 2 cut(s) 115, 386
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 2 cut(s) 112, 383
BstMCI CGRYCG 1 cut(s) 579
BstMWI GCNNNNNNNGC 4 cut(s) 280, 519, 590, 617
BstNI CCWGG 3 cut(s) 33, 250, 328
BstSCI CCNGG 4 cut(s) 31, 170, 248, 326
BstSFI CTRYAG 1 cut(s) 410
BstSLI GKGCMC 1 cut(s) 515
BstV1I GCAGC 3 cut(s) 159, 396, 568
BstV2I GAAGAC 1 cut(s) 200
BstZI CGGCCG 1 cut(s) 576
BsuRI GGCC 6 cut(s) 165, 289, 326, 437, 555, 578
BtrI CACGTC 1 cut(s) 540
BtsCI GGATG 1 cut(s) 494
BtsIMutI CAGTG 1 cut(s) 386
Cac8I GCNNGC 6 cut(s) 7, 167, 335, 482, 524, 618
Cfr10I RCCGGY 1 cut(s) 551
Cfr13I GGNCC 5 cut(s) 164, 324, 435, 449, 554
CseI GACGC 1 cut(s) 622
Csp6I GTAC 1 cut(s) 92
CviAII CATG 1 cut(s) 439
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 2 cut(s) 284, 431
DpnI GATC 2 cut(s) 114, 385
DpnII GATC 2 cut(s) 112, 383
DraIII CACNNNGTG 1 cut(s) 510
EaeI YGGCCR 1 cut(s) 576
EagI CGGCCG 1 cut(s) 576
Eam1104I CTCTTC 6 cut(s) 46, 60, 210, 365, 420, 492
EarI CTCTTC 6 cut(s) 46, 60, 210, 365, 420, 492
EclXI CGGCCG 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 449
Eco52I CGGCCG 1 cut(s) 576
Eco57I CTGAAG 2 cut(s) 208, 359
EcoNI CCTNNNNNAGG 1 cut(s) 67
EcoRII CCWGG 3 cut(s) 31, 248, 326
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 1 cut(s) 442
FaiI YATR 5 cut(s) 23, 83, 440, 474, 509
FaqI GGGAC 1 cut(s) 187
FatI CATG 1 cut(s) 438
FauI CCCGC 2 cut(s) 174, 625
Fnu4HI GCNGC 5 cut(s) 148, 163, 410, 579, 582
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 5 cut(s) 148, 163, 410, 579, 582
GluI GCNGC 5 cut(s) 148, 163, 410, 579, 582
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 6 cut(s) 165, 289, 326, 437, 555, 578
HapII CCGG 3 cut(s) 172, 491, 552
HgaI GACGC 1 cut(s) 622
Hin1I GRCGYC 1 cut(s) 614
Hin1II CATG 1 cut(s) 442
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 1 cut(s) 528
HpaII CCGG 3 cut(s) 172, 491, 552
HphI GGTGA 2 cut(s) 181, 523
Hpy166II GTNNAC 3 cut(s) 18, 452, 543
Hpy188I TCNGA 2 cut(s) 227, 383
Hpy188III TCNNGA 2 cut(s) 116, 212
Hpy8I GTNNAC 3 cut(s) 18, 452, 543
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 2 cut(s) 201, 460
HpyCH4IV ACGT 2 cut(s) 476, 539
HpyCH4V TGCA 2 cut(s) 274, 412
HpyF10VI GCNNNNNNNGC 4 cut(s) 280, 519, 590, 617
HpyF3I CTNAG 2 cut(s) 284, 431
HpySE526I ACGT 2 cut(s) 476, 539
Hsp92I GRCGYC 1 cut(s) 614
Hsp92II CATG 1 cut(s) 442
Kzo9I GATC 2 cut(s) 112, 383
LguI GCTCTTC 1 cut(s) 420
LmnI GCTCC 2 cut(s) 186, 330
Lsp1109I GCAGC 3 cut(s) 159, 396, 568
LweI GCATC 1 cut(s) 503
MaeII ACGT 2 cut(s) 476, 539
MaeIII GTNAC 1 cut(s) 529
MalI GATC 2 cut(s) 114, 385
MboI GATC 2 cut(s) 112, 383
MhlI GDGCHC 1 cut(s) 515
MlyI GAGTC 1 cut(s) 537
MseI TTAA 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 3 cut(s) 172, 491, 552
MspR9I CCNGG 4 cut(s) 33, 172, 250, 328
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 3 cut(s) 33, 250, 328
MwoI GCNNNNNNNGC 4 cut(s) 280, 519, 590, 617
NciI CCSGG 1 cut(s) 172
NdeII GATC 2 cut(s) 112, 383
NlaIII CATG 1 cut(s) 442
NmeAIII GCCGAG 1 cut(s) 554
NmuCI GTSAC 1 cut(s) 529
PciSI GCTCTTC 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 523
PctI GAATGC 1 cut(s) 362
PflFI GACNNNGTC 1 cut(s) 22
PkrI GCNGC 5 cut(s) 149, 164, 411, 580, 583
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
Ppu21I YACGTR 1 cut(s) 477
Psp6I CCWGG 3 cut(s) 31, 248, 326
PspGI CCWGG 3 cut(s) 31, 248, 326
PspPI GGNCC 5 cut(s) 164, 324, 435, 449, 554
PstI CTGCAG 1 cut(s) 414
PsyI GACNNNGTC 1 cut(s) 22
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SapI GCTCTTC 1 cut(s) 420
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 5 cut(s) 148, 163, 410, 579, 582
Sau3AI GATC 2 cut(s) 112, 383
Sau96I GGNCC 5 cut(s) 164, 324, 435, 449, 554
SchI GAGTC 1 cut(s) 537
ScrFI CCNGG 4 cut(s) 33, 172, 250, 328
SduI GDGCHC 1 cut(s) 515
SfaNI GCATC 1 cut(s) 503
SfcI CTRYAG 1 cut(s) 410
SinI GGWCC 1 cut(s) 449
SsiI CCGC 5 cut(s) 162, 167, 579, 591, 618
StyD4I CCNGG 4 cut(s) 31, 170, 248, 326
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 2 cut(s) 201, 460
TaiI ACGT 2 cut(s) 479, 542
TaqI TCGA 2 cut(s) 213, 423
TauI GCSGC 2 cut(s) 165, 581
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 1 cut(s) 393
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 3 cut(s) 147, 409, 581
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 1 cut(s) 455
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 393
Tth111I GACNNNGTC 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 449
XagI CCTNNNNNAGG 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.