Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011295

Physical Location & Seq

Genomic Coordinates Forward (+)

1621202 .. 1622965

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCAGTTGAAGCTGAGGCCACGCCAGGTCGAGGTGTGGTTTCAAAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACAGAGATGGAATGCGAGTATCTGAAGAGATGGTTCGGATCGCTGACTGAACAAAACAGACGGCTGCAAAGGGAGGTGGAGGAGCTGAGGGCAATGAAAGTCAGCCCGCCCACCGTGCTTTACCCCCACAGTTGCGACCCTCTTCCGGCATCCACACTCACCATGTGCCCTCGTTGCGAGCGAGTCACCACCACCACCACTCCCGACAGGGACAGGGGCGGCGGGCCAACCAAGACTAATAATATCCCGGCCACCGCTGCCCCAACCTTGTCCACTAAAGTGGCGACGCCTGCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

125

Amino Acids

14.17

Weight (kDa)

9.96

Isoelectric Point (pI)

64.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	2 - 22	5e-07	Homeodomain
HALZ	PF02183	24 - 58	1.7e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70920 AT1G70920 AT2G01430 AT2G01430
fragaria_vesca	FvH4_4g32460
malus_domestica	MD13G1025200.v1.1 MD16G1027800.v1.1
prunus_persica	Prupe.1G325000_v2.0.a1 Prupe.1G325000_v2.0.a1
pyrus_communis	pycom13g02360 pycom16g02350
rosa_chinensis	RchiOBHm_Chr4g0441321
rosa_laevigata	RLG00000006102
rosa_multiflora	Rmu_sc0012909.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382210
rosa_samantha	Rh4AG384300 Rh4BG398400 Rh4CG413500 Rh4DG391000
rosa_wichuraiana	Rw4G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	182, 294, 297, 330
AclWI	GGATC	1 cut(s)	121
AcoI	YGGCCR	1 cut(s)	324
AcuI	CTGAAG	2 cut(s)	89, 119
AcyI	GRCGYC	1 cut(s)	362
AdeI	CACNNNGTG	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	31, 220
AgsI	TTSAA	2 cut(s)	10, 44
AjnI	CCWGG	2 cut(s)	24, 56
AleI	CACNNNNGTG	1 cut(s)	353
AluBI	AGCT	3 cut(s)	13, 67, 160
AluI	AGCT	3 cut(s)	13, 67, 160
AlwI	GGATC	1 cut(s)	121
AoxI	GGCC	4 cut(s)	17, 54, 299, 324
ApeKI	GCWGC	2 cut(s)	139, 332
AspS9I	GGNCC	2 cut(s)	54, 299
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	226, 253
BaeGI	GKGCMC	1 cut(s)	245
BbvCI	CCTCAGC	2 cut(s)	14, 161
BbvI	GCAGC	2 cut(s)	126, 319
BccI	CCATC	2 cut(s)	76, 99
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	2 cut(s)	26, 58
BcnI	CCSGG	1 cut(s)	323
BisI	GCNGC	3 cut(s)	140, 295, 333
BlsI	GCNGC	3 cut(s)	141, 296, 334
Bme1390I	CCNGG	3 cut(s)	26, 58, 323
BmgT120I	GGNCC	2 cut(s)	54, 299
BmrFI	CCNGG	3 cut(s)	26, 58, 323
BmsI	GCATC	1 cut(s)	233
Bpu10I	CCTNAGC	2 cut(s)	14, 161
BpuMI	CCSGG	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	362
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 220
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	26, 58
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	31, 220
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	5, 152
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	126, 319
BshFI	GGCC	4 cut(s)	19, 56, 301, 326
BsiSI	CCGG	2 cut(s)	221, 323
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	2 cut(s)	31, 220
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	4 cut(s)	19, 56, 301, 326
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	113
BspACI	CCGC	4 cut(s)	182, 294, 297, 330
BspANI	GGCC	4 cut(s)	19, 56, 301, 326
BspCNI	CTCAG	2 cut(s)	6, 153
BspPI	GGATC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	174
BssMI	GATC	1 cut(s)	113
BssNI	GRCGYC	1 cut(s)	362
Bst2UI	CCWGG	2 cut(s)	26, 58
Bst4CI	ACNGT	2 cut(s)	190, 206
Bst6I	CTCTTC	2 cut(s)	95, 222
BstACI	GRCGYC	1 cut(s)	362
BstC8I	GCNNGC	5 cut(s)	65, 182, 254, 299, 366
BstDEI	CTNAG	2 cut(s)	14, 161
BstF5I	GGATG	1 cut(s)	224
BstKTI	GATC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	113
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 190, 249, 332, 365
BstNI	CCWGG	2 cut(s)	26, 58
BstSCI	CCNGG	3 cut(s)	24, 56, 321
BstSLI	GKGCMC	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	126, 319
BstXI	CCANNNNNNTGG	1 cut(s)	355
BsuRI	GGCC	4 cut(s)	19, 56, 301, 326
BtsCI	GGATG	1 cut(s)	224
Cac8I	GCNNGC	5 cut(s)	65, 182, 254, 299, 366
Cfr13I	GGNCC	2 cut(s)	54, 299
CseI	GACGC	1 cut(s)	370
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	9 cut(s)	13, 19, 56, 67, 139, 160, 180, 301, 326
CviKI_1	RGCY	9 cut(s)	13, 19, 56, 67, 139, 160, 180, 301, 326
DdeI	CTNAG	2 cut(s)	14, 161
DpnI	GATC	1 cut(s)	115
DpnII	GATC	1 cut(s)	113
DraIII	CACNNNGTG	1 cut(s)	240
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	95, 222
EarI	CTCTTC	2 cut(s)	95, 222
Eco57I	CTGAAG	2 cut(s)	89, 119
EcoRII	CCWGG	2 cut(s)	24, 56
FaeI	CATG	1 cut(s)	241
FaiI	YATR	1 cut(s)	239
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	1 cut(s)	237
FauI	CCCGC	2 cut(s)	189, 290
Fnu4HI	GCNGC	3 cut(s)	140, 295, 333
FokI	GGATG	1 cut(s)	211
Fsp4HI	GCNGC	3 cut(s)	140, 295, 333
GluI	GCNGC	3 cut(s)	140, 295, 333
HaeIII	GGCC	4 cut(s)	19, 56, 301, 326
HapII	CCGG	2 cut(s)	221, 323
HgaI	GACGC	1 cut(s)	370
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	1 cut(s)	241
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	2 cut(s)	221, 323
HphI	GGTGA	2 cut(s)	226, 253
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	2 cut(s)	99, 113
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	1 cut(s)	364
HpyCH4III	ACNGT	2 cut(s)	190, 206
HpyCH4V	TGCA	2 cut(s)	4, 142
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 190, 249, 332, 365
HpyF3I	CTNAG	2 cut(s)	14, 161
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	113
LmnI	GCTCC	2 cut(s)	60, 157
LpnPI	CCDG	8 cut(s)	11, 38, 43, 70, 234, 268, 274, 336
Lsp1109I	GCAGC	2 cut(s)	126, 319
LweI	GCATC	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	1 cut(s)	115
MboI	GATC	1 cut(s)	113
MboII	GAAGA	2 cut(s)	112, 209
MhlI	GDGCHC	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	267
MnlI	CCTC	7 cut(s)	9, 25, 142, 148, 156, 225, 255
MslI	CAYNNNNRTG	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	2 cut(s)	221, 323
MspR9I	CCNGG	3 cut(s)	26, 58, 323
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	2 cut(s)	26, 58
MwoI	GCNNNNNNNGC	5 cut(s)	10, 190, 249, 332, 365
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	1 cut(s)	113
NlaIII	CATG	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	259
OliI	CACNNNNGTG	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PctI	GAATGC	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	141, 296, 334
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	24, 56
PspGI	CCWGG	2 cut(s)	24, 56
PspPI	GGNCC	2 cut(s)	54, 299
RseI	CAYNNNNRTG	1 cut(s)	353
SatI	GCNGC	3 cut(s)	140, 295, 333
Sau3AI	GATC	1 cut(s)	113
Sau96I	GGNCC	2 cut(s)	54, 299
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	3 cut(s)	26, 58, 323
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	7 cut(s)	15, 30, 36, 69, 153, 162, 344
SfaNI	GCATC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	353
SsiI	CCGC	4 cut(s)	182, 294, 297, 330
StyD4I	CCNGG	3 cut(s)	24, 56, 321
TaaI	ACNGT	2 cut(s)	190, 206
TaqI	TCGA	1 cut(s)	30
TauI	GCSGC	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	139, 332
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.