Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011295

Physical Location & Seq

Genomic Coordinates Reverse (-)

31094809 .. 31097327

Gene Structure 2519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCGAGCTTGGAGTTGACTATGTCTGTTCCTGGCTTCTCTTCCTACCCATCTCTTCCTTCCTCAGTGAGGGACTTGGACATAAACCAAGTACCATCAGCAGGACAAGGAGCAGATCAAGAAGAACTACTGGAGGACGAAGAAGACAGCAGCAACGGATCGGGCGGCCCGCCCCGGAAGAAGCTCCGTCTCACAAAGGAACAGTCCCGTCTTCTCGAAGAGAGCTTCAGACAGCACCACACTTTAAACCCCAGGCAGAAAGAGGCTTTGGCTTTGCAGTTGAAGCTGAGGCCACGCCAAGTTGAGGTGTGGTTTCAAAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACAGAAATGGAATGCGAGTATCTGAAGAGATGGTTCGGGTCACTGACTGAACAGAACCGGAGGCTGCAGAGGGAGGTCGAGGAGCTGAGGGCCATGAAAGTTGGCCCTCCAACTGTGATGTCCCCCCACACTTGTGAACCGCTTCCGGCATCCACCCTCACTATGTGCCCTCATTGCGAGCGAGTCACCACCACCGCAACAACCACCGGCCCTACAAAGACCAAACTCTCGGCCGCTGCCAACACCGCCTTGTCCTCTAAAGCGGGGACGCCCGCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

210

Amino Acids

23.31

Weight (kDa)

8.94

Isoelectric Point (pI)

66.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	59 - 113	1.3e-15	Homeodomain
HALZ	PF02183	115 - 149	4.2e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70920 AT1G70920 AT2G01430 AT2G01430
fragaria_vesca	FvH4_4g32460
malus_domestica	MD13G1025200.v1.1 MD16G1027800.v1.1
prunus_persica	Prupe.1G325000_v2.0.a1 Prupe.1G325000_v2.0.a1
pyrus_communis	pycom13g02360 pycom16g02350
rosa_chinensis	RchiOBHm_Chr4g0441321
rosa_laevigata	RLG00000006102
rosa_multiflora	Rmu_sc0012909.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382210
rosa_samantha	Rh4AG384300 Rh4BG398400 Rh4CG413500 Rh4DG391000
rosa_wichuraiana	Rw4G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	165, 170, 488, 543, 582, 594, 611, 621
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	1 cut(s)	579
AcuI	CTGAAG	3 cut(s)	211, 362, 392
AcyI	GRCGYC	1 cut(s)	617
AdeI	CACNNNGTG	1 cut(s)	513
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	3 cut(s)	69, 101, 304
AgsI	TTSAA	2 cut(s)	283, 317
AjnI	CCWGG	3 cut(s)	31, 251, 329
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AleI	CACNNNNGTG	1 cut(s)	480
AluBI	AGCT	6 cut(s)	9, 184, 225, 286, 340, 433
AluI	AGCT	6 cut(s)	9, 184, 225, 286, 340, 433
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	7 cut(s)	166, 290, 327, 438, 451, 556, 579
ApeKI	GCWGC	3 cut(s)	150, 412, 584
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
Asp700I	GAANNNNTTC	1 cut(s)	489
AspS9I	GGNCC	5 cut(s)	167, 327, 438, 452, 557
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	526
BaeGI	GKGCMC	1 cut(s)	518
BbsI	GAAGAC	2 cut(s)	150, 203
BbvCI	CCTCAGC	2 cut(s)	287, 434
BbvI	GCAGC	3 cut(s)	162, 399, 571
BccI	CCATC	3 cut(s)	58, 103, 372
BciT130I	CCWGG	3 cut(s)	33, 253, 331
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	413
BisI	GCNGC	5 cut(s)	151, 166, 413, 582, 585
BlsI	GCNGC	5 cut(s)	152, 167, 414, 583, 586
Bme1390I	CCNGG	4 cut(s)	33, 175, 253, 331
BmgT120I	GGNCC	5 cut(s)	167, 327, 438, 452, 557
BmrFI	CCNGG	4 cut(s)	33, 175, 253, 331
BmsI	GCATC	1 cut(s)	506
BpiI	GAAGAC	2 cut(s)	150, 203
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	2 cut(s)	287, 434
BpuMI	CCSGG	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	617
BsaJI	CCNNGG	2 cut(s)	173, 251
BsaWI	WCCGGW	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 101, 304
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	520
BseBI	CCWGG	3 cut(s)	33, 253, 331
BseDI	CCNNGG	2 cut(s)	173, 251
BseGI	GGATG	1 cut(s)	497
BseLI	CCNNNNNNNGG	3 cut(s)	69, 101, 304
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	3 cut(s)	78, 278, 425
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	443
BseSI	GKGCMC	1 cut(s)	518
BseX3I	CGGCCG	1 cut(s)	579
BseXI	GCAGC	3 cut(s)	162, 399, 571
Bsh1285I	CGRYCG	1 cut(s)	582
BshFI	GGCC	7 cut(s)	168, 292, 329, 440, 453, 558, 581
BsiEI	CGRYCG	1 cut(s)	582
BsiSI	CCGG	4 cut(s)	175, 406, 494, 555
BslFI	GGGAC	3 cut(s)	86, 190, 454
BslI	CCNNNNNNNGG	3 cut(s)	69, 101, 304
BsmAI	GTCTC	1 cut(s)	194
BsmBI	CGTCTC	1 cut(s)	194
BsmFI	GGGAC	3 cut(s)	86, 190, 454
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	7 cut(s)	168, 292, 329, 440, 453, 558, 581
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	2 cut(s)	115, 158
BspACI	CCGC	8 cut(s)	165, 170, 488, 543, 582, 594, 611, 621
BspANI	GGCC	7 cut(s)	168, 292, 329, 440, 453, 558, 581
BspCNI	CTCAG	3 cut(s)	77, 279, 426
BspMAI	CTGCAG	1 cut(s)	417
BspPI	GGATC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	1 cut(s)	135
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	2 cut(s)	173, 251
BssMI	GATC	2 cut(s)	115, 158
BssNI	GRCGYC	1 cut(s)	617
Bst2UI	CCWGG	3 cut(s)	33, 253, 331
Bst4CI	ACNGT	2 cut(s)	204, 463
Bst6I	CTCTTC	4 cut(s)	46, 60, 213, 368
BstACI	GRCGYC	1 cut(s)	617
BstC8I	GCNNGC	5 cut(s)	7, 170, 338, 527, 621
BstDEI	CTNAG	3 cut(s)	64, 287, 434
BstENI	CCTNNNNNAGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	497
BstKTI	GATC	2 cut(s)	118, 161
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	2 cut(s)	115, 158
BstMCI	CGRYCG	1 cut(s)	582
BstMWI	GCNNNNNNNGC	3 cut(s)	283, 522, 593
BstNI	CCWGG	3 cut(s)	33, 253, 331
BstSCI	CCNGG	4 cut(s)	31, 173, 251, 329
BstSFI	CTRYAG	1 cut(s)	413
BstSLI	GKGCMC	1 cut(s)	518
BstV1I	GCAGC	3 cut(s)	162, 399, 571
BstV2I	GAAGAC	2 cut(s)	150, 203
BstZI	CGGCCG	1 cut(s)	579
BsuRI	GGCC	7 cut(s)	168, 292, 329, 440, 453, 558, 581
BtsCI	GGATG	1 cut(s)	497
BtsIMutI	CAGTG	2 cut(s)	72, 389
Cac8I	GCNNGC	5 cut(s)	7, 170, 338, 527, 621
Cfr10I	RCCGGY	1 cut(s)	554
Cfr13I	GGNCC	5 cut(s)	167, 327, 438, 452, 557
CseI	GACGC	1 cut(s)	625
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	442
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	3 cut(s)	64, 287, 434
DpnI	GATC	2 cut(s)	117, 160
DpnII	GATC	2 cut(s)	115, 158
DraI	TTTAAA	1 cut(s)	246
DraIII	CACNNNGTG	1 cut(s)	513
EaeI	YGGCCR	1 cut(s)	579
EagI	CGGCCG	1 cut(s)	579
Eam1104I	CTCTTC	4 cut(s)	46, 60, 213, 368
EarI	CTCTTC	4 cut(s)	46, 60, 213, 368
EclXI	CGGCCG	1 cut(s)	579
Eco52I	CGGCCG	1 cut(s)	579
Eco57I	CTGAAG	3 cut(s)	211, 362, 392
EcoNI	CCTNNNNNAGG	1 cut(s)	67
EcoRII	CCWGG	3 cut(s)	31, 251, 329
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	1 cut(s)	445
FaiI	YATR	4 cut(s)	23, 83, 443, 512
FaqI	GGGAC	3 cut(s)	86, 190, 454
FatI	CATG	1 cut(s)	441
FauI	CCCGC	3 cut(s)	177, 604, 628
Fnu4HI	GCNGC	5 cut(s)	151, 166, 413, 582, 585
FokI	GGATG	1 cut(s)	484
Fsp4HI	GCNGC	5 cut(s)	151, 166, 413, 582, 585
GluI	GCNGC	5 cut(s)	151, 166, 413, 582, 585
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	7 cut(s)	168, 292, 329, 440, 453, 558, 581
HapII	CCGG	4 cut(s)	175, 406, 494, 555
HgaI	GACGC	1 cut(s)	625
Hin1I	GRCGYC	1 cut(s)	617
Hin1II	CATG	1 cut(s)	445
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	531
HpaII	CCGG	4 cut(s)	175, 406, 494, 555
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	2 cut(s)	18, 485
Hpy188I	TCNGA	2 cut(s)	230, 372
Hpy188III	TCNNGA	2 cut(s)	119, 215
Hpy8I	GTNNAC	2 cut(s)	18, 485
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	2 cut(s)	204, 463
HpyCH4V	TGCA	2 cut(s)	277, 415
HpyF10VI	GCNNNNNNNGC	3 cut(s)	283, 522, 593
HpyF3I	CTNAG	3 cut(s)	64, 287, 434
Hsp92I	GRCGYC	1 cut(s)	617
Hsp92II	CATG	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	115, 158
LmnI	GCTCC	4 cut(s)	110, 189, 333, 430
Lsp1109I	GCAGC	3 cut(s)	162, 399, 571
LweI	GCATC	1 cut(s)	506
MaeIII	GTNAC	2 cut(s)	387, 532
MalI	GATC	2 cut(s)	117, 160
MboI	GATC	2 cut(s)	115, 158
MboII	GAAGA	9 cut(s)	33, 47, 134, 152, 155, 190, 203, 230, 385
MhlI	GDGCHC	1 cut(s)	518
MlyI	GAGTC	1 cut(s)	540
MmeI	TCCRAC	1 cut(s)	482
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	4 cut(s)	175, 406, 494, 555
MspR9I	CCNGG	4 cut(s)	33, 175, 253, 331
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	3 cut(s)	33, 253, 331
MwoI	GCNNNNNNNGC	3 cut(s)	283, 522, 593
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	2 cut(s)	115, 158
NlaIII	CATG	1 cut(s)	445
NmeAIII	GCCGAG	1 cut(s)	557
NmuCI	GTSAC	2 cut(s)	387, 532
OliI	CACNNNNGTG	1 cut(s)	480
PctI	GAATGC	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	489
PflFI	GACNNNGTC	1 cut(s)	22
PkrI	GCNGC	5 cut(s)	152, 167, 414, 583, 586
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
Psp6I	CCWGG	3 cut(s)	31, 251, 329
PspGI	CCWGG	3 cut(s)	31, 251, 329
PspPI	GGNCC	5 cut(s)	167, 327, 438, 452, 557
PstI	CTGCAG	1 cut(s)	417
PsyI	GACNNNGTC	1 cut(s)	22
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	5 cut(s)	151, 166, 413, 582, 585
Sau3AI	GATC	2 cut(s)	115, 158
Sau96I	GGNCC	5 cut(s)	167, 327, 438, 452, 557
SchI	GAGTC	1 cut(s)	540
ScrFI	CCNGG	4 cut(s)	33, 175, 253, 331
SduI	GDGCHC	1 cut(s)	518
SetI	ASST	8 cut(s)	11, 186, 227, 288, 309, 342, 426, 435
SfaNI	GCATC	1 cut(s)	506
SfcI	CTRYAG	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	480
SsiI	CCGC	8 cut(s)	165, 170, 488, 543, 582, 594, 611, 621
StyD4I	CCNGG	4 cut(s)	31, 173, 251, 329
TaaI	ACNGT	2 cut(s)	204, 463
TaqI	TCGA	2 cut(s)	216, 426
TauI	GCSGC	2 cut(s)	168, 584
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	2 cut(s)	72, 396
TseFI	GTSAC	2 cut(s)	387, 532
TseI	GCWGC	3 cut(s)	150, 412, 584
Tsp45I	GTSAC	2 cut(s)	387, 532
TspDTI	ATGAA	1 cut(s)	458
TspGWI	ACGGA	2 cut(s)	171, 176
TspRI	CASTG	2 cut(s)	72, 396
Tth111I	GACNNNGTC	1 cut(s)	22
XagI	CCTNNNNNAGG	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.