Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011295

Physical Location & Seq

Genomic Coordinates Reverse (-)

30996000 .. 30998916

Gene Structure 2917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G325000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGGTTTTTCCACCAACAGGCTCTTCGAGCTTGGAGTTGACTATATCTGTACCTGGCTTCTCTTCATACCCATCTCTTCCTAATTCATCTGTGAGAGGTTTGGACATAAACCAAGTACCATCAATACAAGCAGATCAAGAAGAATGGATGACAGCAGGCATGGAAGACGAAGAAGACAGCAGTAATGGATCAGGCCCTCCGCGGAAGAAGCTTCGTCTCACAAAGGAACAGTCTCGTCTTCTCGAAGAGAGCTTCCGACAACACCACACCTTAAACCCTAAACAGAAAGAGGCGTTGGCGATGCAGTTGAAGCTGAGGCCACGGCAAGTTGAGGTGTGGTTTCAAAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACAGAGATGGAATGCGAGTATCTGAAGAGATGGTTCGGATCACTGACTGAACAGAACAGGAGGCTACAAAGGGAGGTAGAGGAGCTGAGAGCCATGAAAGTGGGCCCACCCACCGTGCTTTCTCCCCACAGTTGTGAGCCTCTTCCGGCATCTACACTCACCATGTGCCCTCGCTGCGAGCGAGTCACCACCACCACCACCACCACTCTCGACAGGGACAGGGACAGAGGCGGCCCCACCAAGACCAACATTTCTTCCGCCCCCGCTACCACCTTGTCCTCTAAAGTGGCAACGCCCGCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

228

Amino Acids

25.5

Weight (kDa)

9.13

Isoelectric Point (pI)

63.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70920 AT1G70920 AT2G01430 AT2G01430
fragaria_vesca	FvH4_4g32460
malus_domestica	MD13G1025200.v1.1 MD16G1027800.v1.1
prunus_persica	Prupe.1G325000_v2.0.a1 Prupe.1G325000_v2.0.a1
pyrus_communis	pycom13g02360 pycom16g02350
rosa_chinensis	RchiOBHm_Chr4g0441321
rosa_laevigata	RLG00000006102
rosa_multiflora	Rmu_sc0012909.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382210
rosa_samantha	Rh4AG384300 Rh4BG398400 Rh4CG413500 Rh4DG391000
rosa_wichuraiana	Rw4G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	205
AciI	CCGC	7 cut(s)	5, 203, 205, 609, 636, 642, 675
AclWI	GGATC	2 cut(s)	199, 424
AcuI	CTGAAG	2 cut(s)	392, 422
AdeI	CACNNNGTG	1 cut(s)	543
AfaI	GTAC	2 cut(s)	54, 120
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	313, 347
AjnI	CCWGG	2 cut(s)	55, 359
AjuI	GAANNNNNNNTTGG	4 cut(s)	10, 42, 281, 313
AleI	CACNNNNGTG	1 cut(s)	510
AluBI	AGCT	6 cut(s)	33, 214, 255, 316, 370, 463
AluI	AGCT	6 cut(s)	33, 214, 255, 316, 370, 463
Alw26I	GTCTC	2 cut(s)	224, 240
AlwI	GGATC	2 cut(s)	199, 424
AoxI	GGCC	5 cut(s)	196, 320, 357, 481, 610
ApaI	GGGCCC	1 cut(s)	485
ApeKI	GCWGC	1 cut(s)	552
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspS9I	GGNCC	5 cut(s)	197, 357, 481, 482, 611
AsuHPI	GGTGA	2 cut(s)	529, 556
BaeGI	GKGCMC	2 cut(s)	485, 548
BanII	GRGCYC	1 cut(s)	485
BbsI	GAAGAC	3 cut(s)	174, 183, 233
BbvCI	CCTCAGC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	539
BccI	CCATC	4 cut(s)	82, 130, 379, 402
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	2 cut(s)	57, 361
BcoDI	GTCTC	2 cut(s)	224, 240
BisI	GCNGC	2 cut(s)	553, 610
BlsI	GCNGC	2 cut(s)	554, 611
Bme1390I	CCNGG	2 cut(s)	57, 361
BmgT120I	GGNCC	5 cut(s)	197, 357, 481, 482, 611
BmiI	GGNNCC	2 cut(s)	483, 613
BmrFI	CCNGG	2 cut(s)	57, 361
BmsI	GCATC	2 cut(s)	294, 536
BpiI	GAAGAC	3 cut(s)	174, 183, 233
Bpu10I	CCTNAGC	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	203, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	57, 361
BseDI	CCNNGG	2 cut(s)	203, 323
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	2 cut(s)	308, 455
BseRI	GAGGAG	1 cut(s)	473
BseSI	GKGCMC	2 cut(s)	485, 548
BseXI	GCAGC	1 cut(s)	539
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	5 cut(s)	198, 322, 359, 483, 612
BsiSI	CCGG	1 cut(s)	524
BslFI	GGGAC	2 cut(s)	608, 614
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	2 cut(s)	224, 240
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	2 cut(s)	608, 614
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	5 cut(s)	198, 322, 359, 483, 612
Bsp120I	GGGCCC	1 cut(s)	481
Bsp1286I	GDGCHC	2 cut(s)	485, 548
Bsp143I	GATC	3 cut(s)	136, 191, 416
BspACI	CCGC	7 cut(s)	5, 203, 205, 609, 636, 642, 675
BspANI	GGCC	5 cut(s)	198, 322, 359, 483, 612
BspCNI	CTCAG	2 cut(s)	309, 456
BspFNI	CGCG	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	483, 613
BspPI	GGATC	2 cut(s)	199, 424
BspQI	GCTCTTC	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	203, 323
BssMI	GATC	3 cut(s)	136, 191, 416
Bst2UI	CCWGG	2 cut(s)	57, 361
Bst4CI	ACNGT	3 cut(s)	234, 493, 509
Bst6I	CTCTTC	6 cut(s)	31, 70, 84, 243, 398, 525
BstC8I	GCNNGC	4 cut(s)	160, 368, 557, 675
BstDEI	CTNAG	2 cut(s)	317, 464
BstDSI	CCRYGG	2 cut(s)	203, 323
BstF5I	GGATG	1 cut(s)	156
BstFNI	CGCG	1 cut(s)	205
BstKTI	GATC	3 cut(s)	139, 194, 419
BstMAI	GTCTC	2 cut(s)	224, 240
BstMBI	GATC	3 cut(s)	136, 191, 416
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 211, 313, 552, 674
BstNI	CCWGG	2 cut(s)	57, 361
BstSCI	CCNGG	2 cut(s)	55, 359
BstSLI	GKGCMC	2 cut(s)	485, 548
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	539
BstV2I	GAAGAC	3 cut(s)	174, 183, 233
BstXI	CCANNNNNNTGG	1 cut(s)	478
BsuRI	GGCC	5 cut(s)	198, 322, 359, 483, 612
BtgI	CCRYGG	2 cut(s)	203, 323
BtgZI	GCGATG	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	419
Cac8I	GCNNGC	4 cut(s)	160, 368, 557, 675
Cfr13I	GGNCC	5 cut(s)	197, 357, 481, 482, 611
Cfr42I	CCGCGG	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	53, 119
CviAII	CATG	3 cut(s)	163, 472, 541
CviQI	GTAC	2 cut(s)	53, 119
DdeI	CTNAG	2 cut(s)	317, 464
DpnI	GATC	3 cut(s)	138, 193, 418
DpnII	GATC	3 cut(s)	136, 191, 416
DraIII	CACNNNGTG	1 cut(s)	543
Eam1104I	CTCTTC	6 cut(s)	31, 70, 84, 243, 398, 525
EarI	CTCTTC	6 cut(s)	31, 70, 84, 243, 398, 525
EciI	GGCGGA	1 cut(s)	625
Eco24I	GRGCYC	1 cut(s)	485
Eco57I	CTGAAG	2 cut(s)	392, 422
EcoO109I	RGGNCCY	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	55, 359
EcoT38I	GRGCYC	1 cut(s)	485
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	3 cut(s)	166, 475, 544
FaiI	YATR	6 cut(s)	47, 70, 110, 164, 473, 542
FaqI	GGGAC	2 cut(s)	608, 614
FatI	CATG	3 cut(s)	162, 471, 540
FauI	CCCGC	2 cut(s)	649, 682
Fnu4HI	GCNGC	2 cut(s)	553, 610
FokI	GGATG	1 cut(s)	163
FriOI	GRGCYC	1 cut(s)	485
Fsp4HI	GCNGC	2 cut(s)	553, 610
GluI	GCNGC	2 cut(s)	553, 610
HaeIII	GGCC	5 cut(s)	198, 322, 359, 483, 612
HapII	CCGG	1 cut(s)	524
Hin1II	CATG	3 cut(s)	166, 475, 544
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	1 cut(s)	561
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	2 cut(s)	529, 556
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	3 cut(s)	260, 402, 416
Hpy188III	TCNNGA	3 cut(s)	140, 245, 587
Hpy8I	GTNNAC	1 cut(s)	42
HpyCH4III	ACNGT	3 cut(s)	234, 493, 509
HpyCH4V	TGCA	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 211, 313, 552, 674
HpyF3I	CTNAG	2 cut(s)	317, 464
Hsp92II	CATG	3 cut(s)	166, 475, 544
KspI	CCGCGG	1 cut(s)	206
Kzo9I	GATC	3 cut(s)	136, 191, 416
LguI	GCTCTTC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	363, 460
Lsp1109I	GCAGC	1 cut(s)	539
LweI	GCATC	2 cut(s)	294, 536
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	3 cut(s)	138, 193, 418
MboI	GATC	3 cut(s)	136, 191, 416
MhlI	GDGCHC	2 cut(s)	485, 548
MluCI	AATT	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	570
MmeI	TCCRAC	1 cut(s)	283
MseI	TTAA	1 cut(s)	275
MslI	CAYNNNNRTG	2 cut(s)	476, 510
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	2 cut(s)	57, 361
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	2 cut(s)	57, 361
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	5 cut(s)	30, 211, 313, 552, 674
NdeII	GATC	3 cut(s)	136, 191, 416
NlaIII	CATG	3 cut(s)	166, 475, 544
NlaIV	GGNNCC	2 cut(s)	483, 613
NmuCI	GTSAC	1 cut(s)	562
OliI	CACNNNNGTG	1 cut(s)	510
PciSI	GCTCTTC	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	556
PctI	GAATGC	1 cut(s)	395
PkrI	GCNGC	2 cut(s)	554, 611
PleI	GAGTC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	569
Psp6I	CCWGG	2 cut(s)	55, 359
PspGI	CCWGG	2 cut(s)	55, 359
PspN4I	GGNNCC	2 cut(s)	483, 613
PspOMI	GGGCCC	1 cut(s)	481
PspPI	GGNCC	5 cut(s)	197, 357, 481, 482, 611
RsaI	GTAC	2 cut(s)	54, 120
RsaNI	GTAC	2 cut(s)	53, 119
RseI	CAYNNNNRTG	2 cut(s)	476, 510
SacII	CCGCGG	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	2 cut(s)	553, 610
Sau3AI	GATC	3 cut(s)	136, 191, 416
Sau96I	GGNCC	5 cut(s)	197, 357, 481, 482, 611
SchI	GAGTC	1 cut(s)	570
ScrFI	CCNGG	2 cut(s)	57, 361
SduI	GDGCHC	2 cut(s)	485, 548
SfaNI	GCATC	2 cut(s)	294, 536
Sfr303I	CCGCGG	1 cut(s)	206
SgrBI	CCGCGG	1 cut(s)	206
SmiMI	CAYNNNNRTG	2 cut(s)	476, 510
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	7 cut(s)	5, 203, 205, 609, 636, 642, 675
StyD4I	CCNGG	2 cut(s)	55, 359
TaaI	ACNGT	3 cut(s)	234, 493, 509
TaqI	TCGA	3 cut(s)	29, 246, 588
TasI	AATT	1 cut(s)	85
TauI	GCSGC	1 cut(s)	612
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	1 cut(s)	552
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	3 cut(s)	57, 78, 488
TspRI	CASTG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.