Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011295

Physical Location & Seq

Genomic Coordinates Forward (+)

1955672 .. 1959476

Gene Structure 3805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1027800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTTGTCCTCTCTCCCCACTAGTTATGTGACCTTTACACCTTTTAACTTTTTCTCTCTATTTCATCATATCTGGTTTTGTGGTTTTAATCTGTCTCCTCCTGTTTTTACTTTACCCTTTCCCCCTCTCTCTCCTCCTTTCTTCTTCTTAATTCTTCATCCCACACCTGCAATTAGGGTTTCTATGGCGGTTTTACCGACGGCGATGGCGATGGGATCTTCGAGCTTGGAGTTGACGATATCCGTACCCGGCTTCTCTTCGTACCCGTCTTTTCCTAATTCATCTGTGAGAGACTTGGACATAAACCAAGTACCATCACTACAAGGAGATCAAGAAGAGTGGATGACAGCAGACATGGAAGACGAAGAAGAAAGCAGCAACGGATTGGGCCCTCCCCGCAAGAAGCTTCGTCTCACGAAGGAACAATCTCGTCTTCTAGAAGAAAGCTTCAGACAACACCACACCTTAAACCCTAAGCAGAAAGAGACGTTGGCGATGCAGTTGAAGCTGAGGCCACGCCAGGTTGAGGTGTGGTTTCAAAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACAGAGATGGAATGCGAGTATCTGAAGAGATGGTTCGGATCGCTGACTGAACAGAACCGACGGCTGCAAAGGGAGGTGAAGGAGCTGAGGGCAATGAAAGTCGGCCCGCCCACCGTGCTTTACCCCCACAGTTGCGACCCTCTTCCGGCATCCACACTCACCATGTGCCCTCGTTGCGAGCGAGTCACCACCACCACCACTCTCGACAGAGACACGGTCAGCGGGCCCACCAAAACTAATAATATCTCGGCCGCCGCGGCCACCACCTTGTCCTCTAAAGTGGCGACGCCCGCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

290

Amino Acids

32.71

Weight (kDa)

8.99

Isoelectric Point (pI)

62.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	133 - 187	4.7e-16	Homeodomain
HALZ	PF02183	189 - 223	7.8e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70920 AT1G70920 AT2G01430 AT2G01430
fragaria_vesca	FvH4_4g32460
malus_domestica	MD13G1025200.v1.1 MD16G1027800.v1.1
prunus_persica	Prupe.1G325000_v2.0.a1 Prupe.1G325000_v2.0.a1
pyrus_communis	pycom13g02360 pycom16g02350
rosa_chinensis	RchiOBHm_Chr4g0441321
rosa_laevigata	RLG00000006102
rosa_multiflora	Rmu_sc0012909.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382210
rosa_samantha	Rh4AG384300 Rh4BG398400 Rh4CG413500 Rh4DG391000
rosa_wichuraiana	Rw4G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	175
AccII	CGCG	1 cut(s)	827
AciI	CCGC	8 cut(s)	188, 397, 677, 792, 822, 825, 827, 861
AclWI	GGATC	2 cut(s)	223, 616
AcoI	YGGCCR	2 cut(s)	819, 828
AcuI	CTGAAG	3 cut(s)	433, 584, 614
AcyI	GRCGYC	1 cut(s)	857
AdeI	CACNNNGTG	1 cut(s)	735
AfaI	GTAC	3 cut(s)	246, 263, 312
AfiI	CCNNNNNNNGG	2 cut(s)	526, 715
AgsI	TTSAA	2 cut(s)	505, 539
AhlI	ACTAGT	1 cut(s)	20
AjnI	CCWGG	2 cut(s)	519, 551
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AluBI	AGCT	6 cut(s)	225, 406, 447, 508, 562, 655
AluI	AGCT	6 cut(s)	225, 406, 447, 508, 562, 655
Alw26I	GTCTC	5 cut(s)	99, 285, 416, 479, 774
AlwI	GGATC	2 cut(s)	223, 616
AoxI	GGCC	7 cut(s)	388, 512, 549, 673, 794, 819, 828
ApaI	GGGCCC	2 cut(s)	392, 798
ApeKI	GCWGC	2 cut(s)	375, 634
AspS9I	GGNCC	6 cut(s)	388, 389, 549, 674, 794, 795
AsuC2I	CCSGG	1 cut(s)	249
AsuHPI	GGTGA	3 cut(s)	658, 721, 748
BaeGI	GKGCMC	3 cut(s)	392, 740, 798
BanII	GRGCYC	2 cut(s)	392, 798
BbsI	GAAGAC	2 cut(s)	366, 425
BbvCI	CCTCAGC	2 cut(s)	509, 656
BbvI	GCAGC	2 cut(s)	387, 621
BccI	CCATC	5 cut(s)	199, 205, 322, 571, 594
BceAI	ACGGC	2 cut(s)	216, 647
BciT130I	CCWGG	2 cut(s)	521, 553
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	5 cut(s)	99, 285, 416, 479, 774
BcuI	ACTAGT	1 cut(s)	20
BfaI	CTAG	2 cut(s)	21, 437
BfuAI	ACCTGC	1 cut(s)	175
BglI	GCCNNNNNGGC	1 cut(s)	827
BisI	GCNGC	5 cut(s)	376, 635, 822, 825, 828
BlsI	GCNGC	5 cut(s)	377, 636, 823, 826, 829
Bme1390I	CCNGG	3 cut(s)	249, 521, 553
BmgT120I	GGNCC	6 cut(s)	388, 389, 549, 674, 794, 795
BmiI	GGNNCC	2 cut(s)	390, 796
BmrFI	CCNGG	3 cut(s)	249, 521, 553
BmsI	GCATC	2 cut(s)	486, 728
BpiI	GAAGAC	2 cut(s)	366, 425
Bpu10I	CCTNAGC	3 cut(s)	474, 509, 656
BpuMI	CCSGG	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	857
BsaJI	CCNNGG	1 cut(s)	825
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 715
Bse3DI	GCAATG	1 cut(s)	669
BseBI	CCWGG	2 cut(s)	521, 553
BseDI	CCNNGG	1 cut(s)	825
BseGI	GGATG	3 cut(s)	157, 348, 719
BseLI	CCNNNNNNNGG	2 cut(s)	526, 715
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	2 cut(s)	500, 647
BseRI	GAGGAG	2 cut(s)	87, 123
BseSI	GKGCMC	3 cut(s)	392, 740, 798
BseX3I	CGGCCG	1 cut(s)	819
BseXI	GCAGC	2 cut(s)	387, 621
Bsh1236I	CGCG	1 cut(s)	827
Bsh1285I	CGRYCG	1 cut(s)	822
BshFI	GGCC	7 cut(s)	390, 514, 551, 675, 796, 821, 830
BsiEI	CGRYCG	1 cut(s)	822
BsiSI	CCGG	2 cut(s)	249, 716
BslI	CCNNNNNNNGG	2 cut(s)	526, 715
BsmAI	GTCTC	5 cut(s)	99, 285, 416, 479, 774
BsmBI	CGTCTC	2 cut(s)	416, 479
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	7 cut(s)	390, 514, 551, 675, 796, 821, 830
Bsp120I	GGGCCC	2 cut(s)	388, 794
Bsp1286I	GDGCHC	3 cut(s)	392, 740, 798
Bsp143I	GATC	3 cut(s)	215, 328, 608
BspACI	CCGC	8 cut(s)	188, 397, 677, 792, 822, 825, 827, 861
BspANI	GGCC	7 cut(s)	390, 514, 551, 675, 796, 821, 830
BspCNI	CTCAG	2 cut(s)	501, 648
BspFNI	CGCG	1 cut(s)	827
BspLI	GGNNCC	2 cut(s)	390, 796
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	223, 616
BsrDI	GCAATG	1 cut(s)	669
BssECI	CCNNGG	1 cut(s)	825
BssMI	GATC	3 cut(s)	215, 328, 608
BssNI	GRCGYC	1 cut(s)	857
Bst2UI	CCWGG	2 cut(s)	521, 553
Bst4CI	ACNGT	3 cut(s)	685, 701, 787
Bst6I	CTCTTC	4 cut(s)	262, 330, 590, 717
BstACI	GRCGYC	1 cut(s)	857
BstC8I	GCNNGC	5 cut(s)	560, 677, 749, 794, 861
BstDEI	CTNAG	3 cut(s)	474, 509, 656
BstDSI	CCRYGG	1 cut(s)	825
BstF5I	GGATG	3 cut(s)	157, 348, 719
BstFNI	CGCG	1 cut(s)	827
BstKTI	GATC	3 cut(s)	218, 331, 611
BstMAI	GTCTC	5 cut(s)	99, 285, 416, 479, 774
BstMBI	GATC	3 cut(s)	215, 328, 608
BstMCI	CGRYCG	1 cut(s)	822
BstMWI	GCNNNNNNNGC	6 cut(s)	396, 505, 685, 744, 827, 860
BstNI	CCWGG	2 cut(s)	521, 553
BstSCI	CCNGG	3 cut(s)	247, 519, 551
BstSLI	GKGCMC	3 cut(s)	392, 740, 798
BstUI	CGCG	1 cut(s)	827
BstV1I	GCAGC	2 cut(s)	387, 621
BstV2I	GAAGAC	2 cut(s)	366, 425
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BstZI	CGGCCG	1 cut(s)	819
BsuRI	GGCC	7 cut(s)	390, 514, 551, 675, 796, 821, 830
BtgI	CCRYGG	1 cut(s)	825
BtgZI	GCGATG	3 cut(s)	218, 224, 509
BtsCI	GGATG	3 cut(s)	157, 348, 719
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	5 cut(s)	560, 677, 749, 794, 861
Cfr13I	GGNCC	6 cut(s)	388, 389, 549, 674, 794, 795
Cfr42I	CCGCGG	1 cut(s)	828
CseI	GACGC	1 cut(s)	865
Csp6I	GTAC	3 cut(s)	245, 262, 311
CspCI	CAANNNNNGTGG	2 cut(s)	320, 355
CviAII	CATG	2 cut(s)	355, 733
CviQI	GTAC	3 cut(s)	245, 262, 311
DdeI	CTNAG	3 cut(s)	474, 509, 656
DpnI	GATC	3 cut(s)	217, 330, 610
DpnII	GATC	3 cut(s)	215, 328, 608
DraIII	CACNNNGTG	1 cut(s)	735
EaeI	YGGCCR	2 cut(s)	819, 828
EagI	CGGCCG	1 cut(s)	819
Eam1104I	CTCTTC	4 cut(s)	262, 330, 590, 717
EarI	CTCTTC	4 cut(s)	262, 330, 590, 717
EclXI	CGGCCG	1 cut(s)	819
Eco24I	GRGCYC	2 cut(s)	392, 798
Eco32I	GATATC	1 cut(s)	240
Eco52I	CGGCCG	1 cut(s)	819
Eco57I	CTGAAG	3 cut(s)	433, 584, 614
EcoO109I	RGGNCCY	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	519, 551
EcoRV	GATATC	1 cut(s)	240
EcoT38I	GRGCYC	2 cut(s)	392, 798
Esp3I	CGTCTC	2 cut(s)	416, 479
FaeI	CATG	2 cut(s)	358, 736
FaiI	YATR	6 cut(s)	27, 69, 185, 302, 356, 734
FatI	CATG	2 cut(s)	354, 732
FauI	CCCGC	4 cut(s)	404, 684, 785, 868
Fnu4HI	GCNGC	5 cut(s)	376, 635, 822, 825, 828
FokI	GGATG	3 cut(s)	144, 355, 706
FriOI	GRGCYC	2 cut(s)	392, 798
Fsp4HI	GCNGC	5 cut(s)	376, 635, 822, 825, 828
FspBI	CTAG	2 cut(s)	21, 437
GluI	GCNGC	5 cut(s)	376, 635, 822, 825, 828
HaeIII	GGCC	7 cut(s)	390, 514, 551, 675, 796, 821, 830
HapII	CCGG	2 cut(s)	249, 716
HgaI	GACGC	1 cut(s)	865
Hin1I	GRCGYC	1 cut(s)	857
Hin1II	CATG	2 cut(s)	358, 736
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HindIII	AAGCTT	2 cut(s)	404, 445
HinfI	GANTC	1 cut(s)	753
HpaII	CCGG	2 cut(s)	249, 716
HphI	GGTGA	3 cut(s)	658, 721, 748
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	3 cut(s)	452, 594, 608
Hpy188III	TCNNGA	4 cut(s)	332, 415, 437, 773
Hpy8I	GTNNAC	1 cut(s)	234
Hpy99I	CGWCG	3 cut(s)	202, 633, 859
HpyAV	CCTTC	2 cut(s)	412, 643
HpyCH4III	ACNGT	3 cut(s)	685, 701, 787
HpyCH4IV	ACGT	1 cut(s)	488
HpyCH4V	TGCA	3 cut(s)	170, 499, 637
HpyF10VI	GCNNNNNNNGC	6 cut(s)	396, 505, 685, 744, 827, 860
HpyF3I	CTNAG	3 cut(s)	474, 509, 656
HpySE526I	ACGT	1 cut(s)	488
Hsp92I	GRCGYC	1 cut(s)	857
Hsp92II	CATG	2 cut(s)	358, 736
KspI	CCGCGG	1 cut(s)	828
Kzo9I	GATC	3 cut(s)	215, 328, 608
LmnI	GCTCC	2 cut(s)	555, 652
LpnPI	CCDG	9 cut(s)	58, 114, 180, 262, 506, 533, 538, 565, 729
Lsp1109I	GCAGC	2 cut(s)	387, 621
LweI	GCATC	2 cut(s)	486, 728
MaeI	CTAG	2 cut(s)	21, 437
MaeII	ACGT	1 cut(s)	488
MaeIII	GTNAC	2 cut(s)	28, 754
MalI	GATC	3 cut(s)	217, 330, 610
MboI	GATC	3 cut(s)	215, 328, 608
MflI	RGATCY	1 cut(s)	215
MhlI	GDGCHC	3 cut(s)	392, 740, 798
MluCI	AATT	3 cut(s)	150, 171, 277
MlyI	GAGTC	1 cut(s)	762
MseI	TTAA	4 cut(s)	45, 87, 149, 467
MspA1I	CMGCKG	2 cut(s)	792, 827
MspI	CCGG	2 cut(s)	249, 716
MspR9I	CCNGG	3 cut(s)	249, 521, 553
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	2 cut(s)	521, 553
MvnI	CGCG	1 cut(s)	827
MwoI	GCNNNNNNNGC	6 cut(s)	396, 505, 685, 744, 827, 860
NciI	CCSGG	1 cut(s)	249
NdeII	GATC	3 cut(s)	215, 328, 608
NlaIII	CATG	2 cut(s)	358, 736
NlaIV	GGNNCC	2 cut(s)	390, 796
NmeAIII	GCCGAG	1 cut(s)	797
NmuCI	GTSAC	2 cut(s)	28, 754
PaqCI	CACCTGC	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	2 cut(s)	206, 748
PctI	GAATGC	1 cut(s)	587
PflFI	GACNNNGTC	1 cut(s)	785
PkrI	GCNGC	5 cut(s)	377, 636, 823, 826, 829
PleI	GAGTC	1 cut(s)	761
PpsI	GAGTC	1 cut(s)	761
Psp6I	CCWGG	2 cut(s)	519, 551
PspGI	CCWGG	2 cut(s)	519, 551
PspN4I	GGNNCC	2 cut(s)	390, 796
PspOMI	GGGCCC	2 cut(s)	388, 794
PspPI	GGNCC	6 cut(s)	388, 389, 549, 674, 794, 795
PsuI	RGATCY	1 cut(s)	215
PsyI	GACNNNGTC	1 cut(s)	785
RsaI	GTAC	3 cut(s)	246, 263, 312
RsaNI	GTAC	3 cut(s)	245, 262, 311
SacII	CCGCGG	1 cut(s)	828
SaqAI	TTAA	4 cut(s)	45, 87, 149, 467
SatI	GCNGC	5 cut(s)	376, 635, 822, 825, 828
Sau3AI	GATC	3 cut(s)	215, 328, 608
Sau96I	GGNCC	6 cut(s)	388, 389, 549, 674, 794, 795
SchI	GAGTC	1 cut(s)	762
ScrFI	CCNGG	3 cut(s)	249, 521, 553
SduI	GDGCHC	3 cut(s)	392, 740, 798
SfaNI	GCATC	2 cut(s)	486, 728
SfiI	GGCCNNNNNGGCC	1 cut(s)	827
Sfr303I	CCGCGG	1 cut(s)	828
SgrBI	CCGCGG	1 cut(s)	828
SpeI	ACTAGT	1 cut(s)	20
Sse9I	AATT	3 cut(s)	150, 171, 277
SsiI	CCGC	8 cut(s)	188, 397, 677, 792, 822, 825, 827, 861
SspMI	CTAG	2 cut(s)	21, 437
StyD4I	CCNGG	3 cut(s)	247, 519, 551
TaaI	ACNGT	3 cut(s)	685, 701, 787
TaiI	ACGT	1 cut(s)	491
TaqI	TCGA	2 cut(s)	221, 774
TasI	AATT	3 cut(s)	150, 171, 277
TauI	GCSGC	3 cut(s)	824, 827, 830
Tru1I	TTAA	4 cut(s)	45, 87, 149, 467
Tru9I	TTAA	4 cut(s)	45, 87, 149, 467
TseFI	GTSAC	2 cut(s)	28, 754
TseI	GCWGC	2 cut(s)	375, 634
Tsp45I	GTSAC	2 cut(s)	28, 754
TspDTI	ATGAA	4 cut(s)	53, 146, 270, 680
TspGWI	ACGGA	2 cut(s)	232, 396
Tth111I	GACNNNGTC	1 cut(s)	785
XbaI	TCTAGA	1 cut(s)	436
XspI	CTAG	2 cut(s)	21, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.