Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011295

Physical Location & Seq

Genomic Coordinates Reverse (-)

62062480 .. 62064566

Gene Structure 2087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCGAGCTTGGAGTTGACTATGTCTGTTCCTGGCTTCTCTTCCTACCCATCTCTTCCTTCCTCTGTGAGGGACTTGGACATAAACCAAGTACCATTGTCACAAAGACCAGATCAAGAAGAAATACTGGAGGACGAAGAAGATAGCAGCAACGGGTCGGGCGGCCCGCCCAGGAAGAAGCTCCGTCTCACAAAGGAACAGTCCCGTCTTCTCGAAGAGAGCTTCAGACAACACCACACCTTAAACCCCAGGCAGAAAGAGGCTTTGGCTTTGCAGTTGAAGCTGAGGCCACGCCAAGTTGAGGTGTGGTTTCAAAATCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAATGCGAGTATTTGAAGAGATGGTTCGGATCGCTGACTGAACAGAATAGGAGGCTGCAGAGGGAGGTCGAAGAGCTGAGGGCCATGAAAGTTGGTCCACCAACTGTGATTTCCCCCATACGTGCGAGCCTCTTCCGGCATCCACCCTCACTATGTGCCCTCGTTGCGAGCGAGTCACCACCACCTCCACAACTACCGGCCCTACAAAGACAAAAATCTCGGCTGCTGCCAACACCGCCTTGTCCTCTAAAGTGGCGACGCCCGCCCTCTAATCCCGGGAGACTTGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

215

Amino Acids

24.72

Weight (kDa)

9.95

Isoelectric Point (pI)

84.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	58 - 112	1.4e-15	Homeodomain
HALZ	PF02183	114 - 148	4.4e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70920 AT1G70920 AT2G01430 AT2G01430
fragaria_vesca	FvH4_4g32460
malus_domestica	MD13G1025200.v1.1 MD16G1027800.v1.1
prunus_persica	Prupe.1G325000_v2.0.a1 Prupe.1G325000_v2.0.a1
pyrus_communis	pycom13g02360 pycom16g02350
rosa_chinensis	RchiOBHm_Chr4g0441321
rosa_laevigata	RLG00000006102
rosa_multiflora	Rmu_sc0012909.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382210
rosa_samantha	Rh4AG384300 Rh4BG398400 Rh4CG413500 Rh4DG391000
rosa_wichuraiana	Rw4G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	162, 167, 590, 617
AclWI	GGATC	1 cut(s)	391
AcuI	CTGAAG	2 cut(s)	208, 359
AcyI	GRCGYC	1 cut(s)	613
AdeI	CACNNNGTG	1 cut(s)	509
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	2 cut(s)	69, 301
AgsI	TTSAA	3 cut(s)	280, 314, 370
AjnI	CCWGG	4 cut(s)	31, 170, 248, 326
AjuI	GAANNNNNNNTTGG	4 cut(s)	248, 280, 448, 480
AluBI	AGCT	6 cut(s)	9, 181, 222, 283, 337, 430
AluI	AGCT	6 cut(s)	9, 181, 222, 283, 337, 430
Alw26I	GTCTC	2 cut(s)	191, 628
AlwI	GGATC	1 cut(s)	391
Ama87I	CYCGRG	1 cut(s)	629
AoxI	GGCC	5 cut(s)	163, 287, 324, 435, 552
ApeKI	GCWGC	4 cut(s)	147, 409, 577, 580
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AspS9I	GGNCC	5 cut(s)	164, 324, 435, 449, 553
AsuC2I	CCSGG	2 cut(s)	630, 631
AsuHPI	GGTGA	1 cut(s)	522
AvaI	CYCGRG	1 cut(s)	629
AvaII	GGWCC	1 cut(s)	449
BaeGI	GKGCMC	1 cut(s)	514
BbsI	GAAGAC	1 cut(s)	200
BbvCI	CCTCAGC	2 cut(s)	284, 431
BbvI	GCAGC	4 cut(s)	159, 396, 564, 567
BccI	CCATC	3 cut(s)	58, 346, 369
BciT130I	CCWGG	4 cut(s)	33, 172, 250, 328
BcnI	CCSGG	2 cut(s)	630, 631
BcoDI	GTCTC	2 cut(s)	191, 628
BfmI	CTRYAG	1 cut(s)	410
BisI	GCNGC	5 cut(s)	148, 163, 410, 578, 581
BlsI	GCNGC	5 cut(s)	149, 164, 411, 579, 582
Bme1390I	CCNGG	6 cut(s)	33, 172, 250, 328, 630, 631
Bme18I	GGWCC	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	629
BmgT120I	GGNCC	5 cut(s)	164, 324, 435, 449, 553
BmrFI	CCNGG	6 cut(s)	33, 172, 250, 328, 630, 631
BmsI	GCATC	1 cut(s)	502
BpiI	GAAGAC	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	149
Bpu10I	CCTNAGC	2 cut(s)	284, 431
BpuMI	CCSGG	2 cut(s)	630, 631
BsaAI	YACGTR	1 cut(s)	476
BsaHI	GRCGYC	1 cut(s)	613
BsaJI	CCNNGG	3 cut(s)	170, 248, 629
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 301
Bse118I	RCCGGY	1 cut(s)	550
Bse1I	ACTGG	1 cut(s)	132
BseBI	CCWGG	4 cut(s)	33, 172, 250, 328
BseDI	CCNNGG	3 cut(s)	170, 248, 629
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	2 cut(s)	69, 301
BseMII	CTCAG	2 cut(s)	275, 422
BseNI	ACTGG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	4 cut(s)	159, 396, 564, 567
BshFI	GGCC	5 cut(s)	165, 289, 326, 437, 554
BsiHKCI	CYCGRG	1 cut(s)	629
BsiSI	CCGG	3 cut(s)	490, 551, 630
BslFI	GGGAC	2 cut(s)	86, 187
BslI	CCNNNNNNNGG	2 cut(s)	69, 301
BsmAI	GTCTC	2 cut(s)	191, 628
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	2 cut(s)	86, 187
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	5 cut(s)	165, 289, 326, 437, 554
BsoBI	CYCGRG	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp143I	GATC	2 cut(s)	112, 383
BspACI	CCGC	4 cut(s)	162, 167, 590, 617
BspANI	GGCC	5 cut(s)	165, 289, 326, 437, 554
BspCNI	CTCAG	2 cut(s)	276, 423
BspMAI	CTGCAG	1 cut(s)	414
BspPI	GGATC	1 cut(s)	391
BspQI	GCTCTTC	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	132
BssAI	RCCGGY	1 cut(s)	550
BssECI	CCNNGG	3 cut(s)	170, 248, 629
BssMI	GATC	2 cut(s)	112, 383
BssNI	GRCGYC	1 cut(s)	613
Bst2UI	CCWGG	4 cut(s)	33, 172, 250, 328
Bst4CI	ACNGT	2 cut(s)	201, 460
Bst6I	CTCTTC	6 cut(s)	46, 60, 210, 365, 420, 491
BstACI	GRCGYC	1 cut(s)	613
BstBAI	YACGTR	1 cut(s)	476
BstC8I	GCNNGC	6 cut(s)	7, 167, 335, 481, 523, 617
BstDEI	CTNAG	2 cut(s)	284, 431
BstENI	CCTNNNNNAGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	493
BstKTI	GATC	2 cut(s)	115, 386
BstMAI	GTCTC	2 cut(s)	191, 628
BstMBI	GATC	2 cut(s)	112, 383
BstMWI	GCNNNNNNNGC	4 cut(s)	280, 518, 589, 616
BstNI	CCWGG	4 cut(s)	33, 172, 250, 328
BstSCI	CCNGG	6 cut(s)	31, 170, 248, 326, 628, 629
BstSFI	CTRYAG	1 cut(s)	410
BstSLI	GKGCMC	1 cut(s)	514
BstV1I	GCAGC	4 cut(s)	159, 396, 564, 567
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	5 cut(s)	165, 289, 326, 437, 554
BtsCI	GGATG	1 cut(s)	493
Cac8I	GCNNGC	6 cut(s)	7, 167, 335, 481, 523, 617
Cfr10I	RCCGGY	1 cut(s)	550
Cfr13I	GGNCC	5 cut(s)	164, 324, 435, 449, 553
Cfr9I	CCCGGG	1 cut(s)	629
CseI	GACGC	1 cut(s)	621
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	439
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	2 cut(s)	284, 431
DpnI	GATC	2 cut(s)	114, 385
DpnII	GATC	2 cut(s)	112, 383
DraIII	CACNNNGTG	1 cut(s)	509
Eam1104I	CTCTTC	6 cut(s)	46, 60, 210, 365, 420, 491
EarI	CTCTTC	6 cut(s)	46, 60, 210, 365, 420, 491
Eco47I	GGWCC	1 cut(s)	449
Eco57I	CTGAAG	2 cut(s)	208, 359
Eco88I	CYCGRG	1 cut(s)	629
EcoNI	CCTNNNNNAGG	1 cut(s)	67
EcoRII	CCWGG	4 cut(s)	31, 170, 248, 326
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	1 cut(s)	442
FaiI	YATR	5 cut(s)	23, 83, 440, 473, 508
FaqI	GGGAC	2 cut(s)	86, 187
FatI	CATG	1 cut(s)	438
FauI	CCCGC	2 cut(s)	174, 624
Fnu4HI	GCNGC	5 cut(s)	148, 163, 410, 578, 581
FokI	GGATG	1 cut(s)	480
Fsp4HI	GCNGC	5 cut(s)	148, 163, 410, 578, 581
GluI	GCNGC	5 cut(s)	148, 163, 410, 578, 581
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	5 cut(s)	165, 289, 326, 437, 554
HapII	CCGG	3 cut(s)	490, 551, 630
HgaI	GACGC	1 cut(s)	621
Hin1I	GRCGYC	1 cut(s)	613
Hin1II	CATG	1 cut(s)	442
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	527
HpaII	CCGG	3 cut(s)	490, 551, 630
HphI	GGTGA	1 cut(s)	522
Hpy166II	GTNNAC	2 cut(s)	18, 452
Hpy188I	TCNGA	2 cut(s)	227, 383
Hpy188III	TCNNGA	2 cut(s)	116, 212
Hpy8I	GTNNAC	2 cut(s)	18, 452
Hpy99I	CGWCG	1 cut(s)	615
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	2 cut(s)	201, 460
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	2 cut(s)	274, 412
HpyF10VI	GCNNNNNNNGC	4 cut(s)	280, 518, 589, 616
HpyF3I	CTNAG	2 cut(s)	284, 431
HpySE526I	ACGT	1 cut(s)	475
Hsp92I	GRCGYC	1 cut(s)	613
Hsp92II	CATG	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	112, 383
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	2 cut(s)	186, 330
Lsp1109I	GCAGC	4 cut(s)	159, 396, 564, 567
LweI	GCATC	1 cut(s)	502
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	2 cut(s)	99, 528
MalI	GATC	2 cut(s)	114, 385
MboI	GATC	2 cut(s)	112, 383
MhlI	GDGCHC	1 cut(s)	514
MlyI	GAGTC	1 cut(s)	536
MseI	TTAA	1 cut(s)	242
MspI	CCGG	3 cut(s)	490, 551, 630
MspR9I	CCNGG	6 cut(s)	33, 172, 250, 328, 630, 631
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	4 cut(s)	33, 172, 250, 328
MwoI	GCNNNNNNNGC	4 cut(s)	280, 518, 589, 616
NciI	CCSGG	2 cut(s)	630, 631
NdeII	GATC	2 cut(s)	112, 383
NlaIII	CATG	1 cut(s)	442
NmeAIII	GCCGAG	1 cut(s)	553
NmuCI	GTSAC	2 cut(s)	99, 528
PciSI	GCTCTTC	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PctI	GAATGC	1 cut(s)	362
PflFI	GACNNNGTC	1 cut(s)	22
PkrI	GCNGC	5 cut(s)	149, 164, 411, 579, 582
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Ppu21I	YACGTR	1 cut(s)	476
Psp6I	CCWGG	4 cut(s)	31, 170, 248, 326
PspGI	CCWGG	4 cut(s)	31, 170, 248, 326
PspPI	GGNCC	5 cut(s)	164, 324, 435, 449, 553
PstI	CTGCAG	1 cut(s)	414
PsyI	GACNNNGTC	1 cut(s)	22
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	5 cut(s)	148, 163, 410, 578, 581
Sau3AI	GATC	2 cut(s)	112, 383
Sau96I	GGNCC	5 cut(s)	164, 324, 435, 449, 553
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	6 cut(s)	33, 172, 250, 328, 630, 631
SduI	GDGCHC	1 cut(s)	514
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	449
SmaI	CCCGGG	1 cut(s)	631
SsiI	CCGC	4 cut(s)	162, 167, 590, 617
StyD4I	CCNGG	6 cut(s)	31, 170, 248, 326, 628, 629
TaaI	ACNGT	2 cut(s)	201, 460
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	2 cut(s)	213, 423
TauI	GCSGC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TseFI	GTSAC	2 cut(s)	99, 528
TseI	GCWGC	4 cut(s)	147, 409, 577, 580
Tsp45I	GTSAC	2 cut(s)	99, 528
TspDTI	ATGAA	1 cut(s)	455
TspGWI	ACGGA	1 cut(s)	173
TspMI	CCCGGG	1 cut(s)	629
Tth111I	GACNNNGTC	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	449
XagI	CCTNNNNNAGG	1 cut(s)	67
XmaI	CCCGGG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.