AT2G01490

Phytanoyl-CoA dioxygenase (PhyH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014313
Physical Location & Seq
Forward (+)
221013 .. 223809
2797 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01490.1

Sequence Viewer

Length: 852 bp
ATGGGAATCACCGGAAGTCTAACGCCAGATCAGCTCGATTTTTTCCACTCTCAAGGGTATTTGGTAATCGAATCGTTCGCGAGTGAGGATGAGATAAGAGGCTTAAGGAAGAGGATGGATGAGTTGCTTAATCAGTTTGATTGTTCCGTCTCCTCTATCTTCTCCACCAAAAATCAGAAGCACACCACAGATAATTACTTCTTTGAGAGCGCTGAGAAAATCTCCTTCTTCTTTGAAGAAAAAGCTTTTGGTGATGATGGGAAATTGAAGCAACCCAAACAACTCTCTATAAACAAAGTTGGGCATGCACTGCATGAGCTTGACCCATTGTATAAGGATTTCACATATTCGTCAAAGTTTTCAAGTTTGGCATCATCCTTAGGTTACAGGAGACCAGTTGTCATGCAGTCTATGTATATTTTCAAGCAACCTGGAATTGGAGGCGAAGTTGTGCCGCACCAAGATAATTCTTTTGTGTACACGGATCCACAGAGTTGTACTGGTCTCTGGATTGCTCTTGAAGATTCTACATTAGTTAATGGTTGTCTTTGGGCAATTCCTGGATCTCATAAGAATGGTTTAGTTAGAAGGTTTATCCGTGGTGACAACGGTATAACCTTTGATCAGCCATCCCCATCTTACGAGCAGAAAGATTTTGTGTCTATTGAAATGAAAGCAGGCTCATTGATTGCCATTCATGGTGATCTAATCCATCAAAGTTTCGAGAATCTATCCTCGAAGTCAAGACATGCCTATAGCTTACATGTAGTAGAATCTGATGGATGTAAATGGGCAAAAGACAACTGGATACAAAGAGCAAAAATGCCGGAGCCTCTCTATGTTCTTCCTTGA

Protein Analysis

283

Amino Acids

32.03

Weight (kDa)

5.93

Isoelectric Point (pI)

49.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhyH PF05721 15 - 251 1.2e-57 Phytanoyl-CoA dioxygenase (PhyH)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01490 AT2G01490
fragaria_vesca FvH4_4g32640
malus_domestica MD13G1023900.v1.1 MD16G1026600.v1.1
prunus_persica Prupe.1G326800_v2.0.a1
pyrus_communis pycom16g02240
rosa_chinensis RchiOBHm_Chr4g0441521
rosa_laevigata RLG00000006088
rosa_roxburghii Rroxscaffold_5G00382370 Rroxscaffold_7G00185860
rosa_rugosa Rorug04G0334400 Rorug06G0150600
rosa_samantha Rh4BG399900 Rh4CG414900
rosa_wichuraiana Rw4G033320 Rw6G022810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 80
AciI CCGC 1 cut(s) 455
AclWI GGATC 3 cut(s) 479, 492, 571
AfaI GTAC 2 cut(s) 479, 499
AfeI AGCGCT 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 437
AflII CTTAAG 1 cut(s) 103
AflIII ACRYGT 1 cut(s) 763
AgsI TTSAA 6 cut(s) 236, 268, 363, 424, 521, 668
AhdI GACNNNNNGTC 1 cut(s) 398
AjnI CCWGG 2 cut(s) 430, 559
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 4 cut(s) 34, 245, 319, 759
AluI AGCT 4 cut(s) 34, 245, 319, 759
Alw26I GTCTC 3 cut(s) 154, 385, 509
AlwI GGATC 3 cut(s) 479, 492, 571
Aor51HI AGCGCT 1 cut(s) 211
AspLEI GCGC 1 cut(s) 212
AsuHPI GGTGA 3 cut(s) 263, 614, 713
AxyI CCTNAGG 1 cut(s) 379
BamHI GGATCC 1 cut(s) 484
BccI CCATC 6 cut(s) 109, 251, 637, 643, 720, 773
BciT130I CCWGG 2 cut(s) 432, 561
BciVI GTATCC 1 cut(s) 801
BclI TGATCA 1 cut(s) 622
BcoDI GTCTC 3 cut(s) 154, 385, 509
BfmI CTRYAG 1 cut(s) 754
BfoI RGCGCY 1 cut(s) 213
BfrI CTTAAG 1 cut(s) 103
BfuI GTATCC 1 cut(s) 801
BisI GCNGC 1 cut(s) 455
BlsI GCNGC 1 cut(s) 456
Bme1390I CCNGG 2 cut(s) 432, 561
BmeRI GACNNNNNGTC 1 cut(s) 398
BmiI GGNNCC 2 cut(s) 486, 831
BmrFI CCNGG 2 cut(s) 432, 561
BmsI GCATC 1 cut(s) 380
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpuEI CTTGAG 1 cut(s) 36
BsaI GGTCTC 2 cut(s) 385, 509
BsaJI CCNNGG 1 cut(s) 598
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse1I ACTGG 3 cut(s) 395, 505, 809
Bse21I CCTNAGG 1 cut(s) 379
BseBI CCWGG 2 cut(s) 432, 561
BseDI CCNNGG 1 cut(s) 598
BseGI GGATG 6 cut(s) 94, 120, 124, 374, 629, 788
BseLI CCNNNNNNNGG 1 cut(s) 437
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 3 cut(s) 395, 505, 809
BseRI GAGGAG 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 80
BsiSI CCGG 2 cut(s) 12, 827
BslI CCNNNNNNNGG 1 cut(s) 437
BsmAI GTCTC 3 cut(s) 154, 385, 509
BsmBI CGTCTC 1 cut(s) 154
Bso31I GGTCTC 2 cut(s) 385, 509
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 5 cut(s) 28, 484, 563, 622, 703
Bsp68I TCGCGA 1 cut(s) 80
BspACI CCGC 1 cut(s) 455
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 2 cut(s) 486, 831
BspPI GGATC 3 cut(s) 479, 492, 571
BspTI CTTAAG 1 cut(s) 103
BspTNI GGTCTC 2 cut(s) 385, 509
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 3 cut(s) 395, 505, 809
BssECI CCNNGG 1 cut(s) 598
BssMI GATC 5 cut(s) 28, 484, 563, 622, 703
Bst2UI CCWGG 2 cut(s) 432, 561
Bst4CI ACNGT 1 cut(s) 611
Bst6I CTCTTC 1 cut(s) 104
BstAFI CTTAAG 1 cut(s) 103
BstAPI GCANNNNNTGC 1 cut(s) 310
BstAUI TGTACA 1 cut(s) 477
BstC8I GCNNGC 2 cut(s) 306, 679
BstDEI CTNAG 2 cut(s) 213, 379
BstDSI CCRYGG 1 cut(s) 598
BstF5I GGATG 6 cut(s) 94, 120, 124, 374, 629, 788
BstFNI CGCG 1 cut(s) 80
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 5 cut(s) 31, 487, 566, 625, 706
BstMAI GTCTC 3 cut(s) 154, 385, 509
BstMBI GATC 5 cut(s) 28, 484, 563, 622, 703
BstMWI GCNNNNNNNGC 2 cut(s) 31, 310
BstNI CCWGG 2 cut(s) 432, 561
BstNSI RCATGY 3 cut(s) 308, 752, 767
BstSCI CCNGG 2 cut(s) 430, 559
BstSFI CTRYAG 1 cut(s) 754
BstUI CGCG 1 cut(s) 80
BstX2I RGATCY 2 cut(s) 484, 563
BstYI RGATCY 2 cut(s) 484, 563
Bsu36I CCTNAGG 1 cut(s) 379
BsuI GTATCC 1 cut(s) 801
BtgI CCRYGG 1 cut(s) 598
BtsCI GGATG 6 cut(s) 94, 120, 124, 374, 629, 788
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 1 cut(s) 308
BtuMI TCGCGA 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 306, 679
CfoI GCGC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 478, 498
CviAII CATG 6 cut(s) 305, 314, 403, 698, 749, 764
CviJI RGCY 8 cut(s) 34, 102, 245, 319, 628, 681, 759, 832
CviKI_1 RGCY 8 cut(s) 34, 102, 245, 319, 628, 681, 759, 832
CviQI GTAC 2 cut(s) 478, 498
DdeI CTNAG 2 cut(s) 213, 379
DpnI GATC 5 cut(s) 30, 486, 565, 624, 705
DpnII GATC 5 cut(s) 28, 484, 563, 622, 703
DriI GACNNNNNGTC 1 cut(s) 398
Eam1104I CTCTTC 1 cut(s) 104
Eam1105I GACNNNNNGTC 1 cut(s) 398
EarI CTCTTC 1 cut(s) 104
Eco31I GGTCTC 2 cut(s) 385, 509
Eco47III AGCGCT 1 cut(s) 211
Eco81I CCTNAGG 1 cut(s) 379
EcoRII CCWGG 2 cut(s) 430, 559
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 6 cut(s) 308, 317, 406, 701, 752, 767
FatI CATG 6 cut(s) 304, 313, 402, 697, 748, 763
FbaI TGATCA 1 cut(s) 622
Fnu4HI GCNGC 1 cut(s) 455
FokI GGATG 6 cut(s) 101, 127, 131, 361, 616, 795
Fsp4HI GCNGC 1 cut(s) 455
GlaI GCGC 1 cut(s) 211
GluI GCNGC 1 cut(s) 455
HaeII RGCGCY 1 cut(s) 213
HapII CCGG 2 cut(s) 12, 827
HhaI GCGC 1 cut(s) 212
Hin1II CATG 6 cut(s) 308, 317, 406, 701, 752, 767
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 5 cut(s) 6, 71, 524, 727, 773
HpaII CCGG 2 cut(s) 12, 827
HphI GGTGA 3 cut(s) 263, 614, 713
Hpy166II GTNNAC 2 cut(s) 478, 480
Hpy188I TCNGA 2 cut(s) 177, 778
Hpy188III TCNNGA 5 cut(s) 79, 508, 518, 724, 744
Hpy8I GTNNAC 2 cut(s) 478, 480
HpyAV CCTTC 2 cut(s) 235, 582
HpyCH4III ACNGT 1 cut(s) 611
HpyCH4V TGCA 3 cut(s) 308, 313, 406
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 310
HpyF3I CTNAG 2 cut(s) 213, 379
Hsp92II CATG 6 cut(s) 308, 317, 406, 701, 752, 767
HspAI GCGC 1 cut(s) 210
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 5 cut(s) 28, 484, 563, 622, 703
LmnI GCTCC 1 cut(s) 829
LweI GCATC 1 cut(s) 380
MaeIII GTNAC 2 cut(s) 383, 602
MalI GATC 5 cut(s) 30, 486, 565, 624, 705
MboI GATC 5 cut(s) 28, 484, 563, 622, 703
MboII GAAGA 6 cut(s) 121, 151, 220, 248, 533, 836
MflI RGATCY 2 cut(s) 484, 563
MluCI AATT 5 cut(s) 193, 263, 435, 466, 555
MnlI CCTC 7 cut(s) 79, 92, 105, 163, 434, 745, 843
MseI TTAA 3 cut(s) 104, 129, 537
MslI CAYNNNNRTG 1 cut(s) 573
MspCI CTTAAG 1 cut(s) 103
MspI CCGG 2 cut(s) 12, 827
MspR9I CCNGG 2 cut(s) 432, 561
MvaI CCWGG 2 cut(s) 432, 561
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 31, 310
NdeII GATC 5 cut(s) 28, 484, 563, 622, 703
NlaIII CATG 6 cut(s) 308, 317, 406, 701, 752, 767
NlaIV GGNNCC 2 cut(s) 486, 831
NmuCI GTSAC 1 cut(s) 602
NruI TCGCGA 1 cut(s) 80
NspI RCATGY 3 cut(s) 308, 752, 767
PaeI GCATGC 1 cut(s) 308
PciI ACATGT 1 cut(s) 763
PfeI GAWTC 5 cut(s) 6, 71, 524, 727, 773
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 1 cut(s) 456
PscI ACATGT 1 cut(s) 763
Psp6I CCWGG 2 cut(s) 430, 559
PspGI CCWGG 2 cut(s) 430, 559
PspN4I GGNNCC 2 cut(s) 486, 831
PsuI RGATCY 2 cut(s) 484, 563
RruI TCGCGA 1 cut(s) 80
RsaI GTAC 2 cut(s) 479, 499
RsaNI GTAC 2 cut(s) 478, 498
RseI CAYNNNNRTG 1 cut(s) 573
SaqAI TTAA 3 cut(s) 104, 129, 537
SatI GCNGC 1 cut(s) 455
Sau3AI GATC 5 cut(s) 28, 484, 563, 622, 703
ScrFI CCNGG 2 cut(s) 432, 561
SetI ASST 8 cut(s) 36, 247, 321, 385, 433, 593, 620, 761
SfaNI GCATC 1 cut(s) 380
SfcI CTRYAG 1 cut(s) 754
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 2 cut(s) 51, 103
SmoI CTYRAG 2 cut(s) 51, 103
SphI GCATGC 1 cut(s) 308
Sse9I AATT 5 cut(s) 193, 263, 435, 466, 555
SsiI CCGC 1 cut(s) 455
StyD4I CCNGG 2 cut(s) 430, 559
TaaI ACNGT 1 cut(s) 611
TaqI TCGA 4 cut(s) 36, 69, 723, 737
TasI AATT 5 cut(s) 193, 263, 435, 466, 555
TatI WGTACW 2 cut(s) 477, 497
TauI GCSGC 1 cut(s) 457
TfiI GAWTC 5 cut(s) 6, 71, 524, 727, 773
Tru1I TTAA 3 cut(s) 104, 129, 537
Tru9I TTAA 3 cut(s) 104, 129, 537
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 1 cut(s) 602
Tsp45I GTSAC 1 cut(s) 602
TspDTI ATGAA 2 cut(s) 686, 686
TspGWI ACGGA 3 cut(s) 136, 497, 587
TspRI CASTG 1 cut(s) 315
Vha464I CTTAAG 1 cut(s) 103
XceI RCATGY 3 cut(s) 308, 752, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.