Prupe.1G326800_v2.0.a1

Phytanoyl-CoA dioxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014313
Physical Location & Seq
Forward (+)
31079419 .. 31082472
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G326800.1

Sequence Viewer

Length: 876 bp
ATGGGCATCGTCGGAAATCTCAGTCCAGACCAATTGCACTCCTTCAACTCCCAAGGTTATTTTGTTATAGAATCGTTTGCCAGTGCGGAGGACATCGATGCCATGAGGAAGAGAATGGACCAATTGCTTCACGACTTCGACTGCTCCGCCTCCGCCTCTATTTTCTCTACCAAGAATCAGCAACAGTCGACGGACAATTACTTCTACGAAAGCGTCGAGAAGATTTCGTTTTTCTTCGAAGAGAAAGCTTTTGGGAATGATGGAGAGCTACAACAACCAAAGGAACTTTCCATTAATAAAGTTGGCCATGCGTTACATGAGCTCGATCCAGTATTTAAAGGTTTCTCCTATTCTGAGAAAGTTTCAAGTTTGTTCTCCTCCTTGGGTTATAAAAGGCCCATCATCATTCAGTCTATGTACATATTTAAGCAACCAGGTATTGGAGGTGAGGTAGTACCGCATCAGGATAACTCATTTCTTTATACCGAACCACCAACTTGCACAGGGCTGTGGCTGGCTCTAGAAGATGCAACAATAACGAATGGCTGCCTATGGGCTATACCTGGATCTCAAAAGAATGGCCTTGTCAGACGGTTCATTAGAGGGGAAGGGGGCGTGACCTTTGATCGTCCTTCCCCTGAGTATGATCAAAAGGATTTTGTGCCTATTGAAGTGAAAGCTGGGTCTTTAGTTGTTATTCATGGTGATCTTATTCATCAAAGTTTTGAGAATCAGTCCTCAAAATCAAGGCATGCGTACAGCTTGCATGTGGTGGATACTGATGGCTGCAAATGGGCTCAAGATAATTGGATCAGGCGAAAAGTGGAGGCAGAGCCTCTCTATGTGTCTTCGTCGGACCTGAAATTCGATCTCTAG

Protein Analysis

292

Amino Acids

32.77

Weight (kDa)

5.19

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01490 AT2G01490
fragaria_vesca FvH4_4g32640
malus_domestica MD13G1023900.v1.1 MD16G1026600.v1.1
prunus_persica Prupe.1G326800_v2.0.a1
pyrus_communis pycom16g02240
rosa_chinensis RchiOBHm_Chr4g0441521
rosa_laevigata RLG00000006088
rosa_roxburghii Rroxscaffold_5G00382370 Rroxscaffold_7G00185860
rosa_rugosa Rorug04G0334400 Rorug06G0150600
rosa_samantha Rh4BG399900 Rh4CG414900
rosa_wichuraiana Rw4G033320 Rw6G022810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 390
AccB7I CCANNNNNTGG 1 cut(s) 440
AccI GTMKAC 1 cut(s) 188
AciI CCGC 4 cut(s) 86, 147, 153, 458
AclWI GGATC 3 cut(s) 320, 574, 818
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 1 cut(s) 863
AfaI GTAC 3 cut(s) 419, 456, 758
AfiI CCNNNNNNNGG 1 cut(s) 440
AgsI TTSAA 3 cut(s) 46, 366, 671
AjnI CCWGG 2 cut(s) 433, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 271, 303
AluBI AGCT 5 cut(s) 248, 268, 322, 680, 762
AluI AGCT 5 cut(s) 248, 268, 322, 680, 762
Alw21I GWGCWC 1 cut(s) 324
AlwI GGATC 3 cut(s) 320, 574, 818
AoxI GGCC 3 cut(s) 304, 395, 580
ApeKI GCWGC 2 cut(s) 546, 786
ApoI RAATTY 1 cut(s) 863
ArsI GACNNNNNNTTYG 1 cut(s) 848
AseI ATTAAT 1 cut(s) 294
AspS9I GGNCC 3 cut(s) 118, 396, 856
AsuHPI GGTGA 2 cut(s) 458, 716
AsuII TTCGAA 1 cut(s) 237
AvaII GGWCC 2 cut(s) 118, 856
BalI TGGCCA 1 cut(s) 306
BanII GRGCYC 2 cut(s) 324, 799
BbsI GAAGAC 1 cut(s) 840
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 533, 773
BccI CCATC 3 cut(s) 254, 407, 776
BciT130I CCWGG 2 cut(s) 435, 564
BciVI GTATCC 1 cut(s) 769
BclI TGATCA 1 cut(s) 646
BfaI CTAG 2 cut(s) 521, 874
BfuI GTATCC 1 cut(s) 769
BisI GCNGC 2 cut(s) 547, 787
BlsI GCNGC 2 cut(s) 548, 788
Bme1390I CCNGG 2 cut(s) 435, 564
Bme18I GGWCC 2 cut(s) 118, 856
BmgT120I GGNCC 3 cut(s) 118, 396, 856
BmrFI CCNGG 2 cut(s) 435, 564
BmsI GCATC 4 cut(s) 15, 88, 469, 517
BpiI GAAGAC 1 cut(s) 840
Bpu14I TTCGAA 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 783
Bsa29I ATCGAT 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 52, 381
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse1I ACTGG 2 cut(s) 81, 329
BseBI CCWGG 2 cut(s) 435, 564
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 52, 381
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMII CTCAG 3 cut(s) 34, 345, 630
BseNI ACTGG 2 cut(s) 81, 329
BseRI GAGGAG 1 cut(s) 367
BseXI GCAGC 2 cut(s) 533, 773
BseYI CCCAGC 1 cut(s) 680
BshFI GGCC 3 cut(s) 306, 397, 582
BshVI ATCGAT 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 324
BslI CCNNNNNNNGG 1 cut(s) 440
BsnI GGCC 3 cut(s) 306, 397, 582
Bsp119I TTCGAA 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 324, 799
Bsp1407I TGTACA 1 cut(s) 417
Bsp143I GATC 7 cut(s) 325, 566, 625, 646, 706, 810, 868
BspACI CCGC 4 cut(s) 86, 147, 153, 458
BspANI GGCC 3 cut(s) 306, 397, 582
BspCNI CTCAG 3 cut(s) 33, 346, 631
BspDI ATCGAT 1 cut(s) 96
BspPI GGATC 3 cut(s) 320, 574, 818
BspT104I TTCGAA 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 417
BsrI ACTGG 2 cut(s) 81, 329
BssECI CCNNGG 2 cut(s) 52, 381
BssMI GATC 7 cut(s) 325, 566, 625, 646, 706, 810, 868
BssT1I CCWWGG 2 cut(s) 52, 381
Bst2UI CCWGG 2 cut(s) 435, 564
Bst4CI ACNGT 2 cut(s) 186, 594
Bst6I CTCTTC 2 cut(s) 104, 234
BstAUI TGTACA 1 cut(s) 417
BstBI TTCGAA 1 cut(s) 237
BstC8I GCNNGC 3 cut(s) 516, 753, 764
BstDEI CTNAG 3 cut(s) 20, 354, 639
BstKTI GATC 7 cut(s) 328, 569, 628, 649, 709, 813, 871
BstMBI GATC 7 cut(s) 325, 566, 625, 646, 706, 810, 868
BstNI CCWGG 2 cut(s) 435, 564
BstNSI RCATGY 2 cut(s) 755, 770
BstSCI CCNGG 2 cut(s) 433, 562
BstV1I GCAGC 2 cut(s) 533, 773
BstV2I GAAGAC 1 cut(s) 840
BstX2I RGATCY 1 cut(s) 566
BstYI RGATCY 1 cut(s) 566
Bsu15I ATCGAT 1 cut(s) 96
BsuI GTATCC 1 cut(s) 769
BsuRI GGCC 3 cut(s) 306, 397, 582
BsuTUI ATCGAT 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 88
Cac8I GCNNGC 3 cut(s) 516, 753, 764
Cfr13I GGNCC 3 cut(s) 118, 396, 856
ClaI ATCGAT 1 cut(s) 96
CseI GACGC 1 cut(s) 202
CsiI ACCWGGT 1 cut(s) 433
Csp6I GTAC 3 cut(s) 418, 455, 757
CviAII CATG 6 cut(s) 103, 308, 317, 701, 752, 767
CviQI GTAC 3 cut(s) 418, 455, 757
DdeI CTNAG 3 cut(s) 20, 354, 639
DpnI GATC 7 cut(s) 327, 568, 627, 648, 708, 812, 870
DpnII GATC 7 cut(s) 325, 566, 625, 646, 706, 810, 868
DraI TTTAAA 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 2 cut(s) 104, 234
EarI CTCTTC 2 cut(s) 104, 234
EciI GGCGGA 2 cut(s) 136, 142
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 2 cut(s) 52, 381
Eco24I GRGCYC 2 cut(s) 324, 799
Eco47I GGWCC 2 cut(s) 118, 856
Eco53kI GAGCTC 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 322
EcoRII CCWGG 2 cut(s) 433, 562
EcoT14I CCWWGG 2 cut(s) 52, 381
EcoT38I GRGCYC 2 cut(s) 324, 799
ErhI CCWWGG 2 cut(s) 52, 381
FaeI CATG 6 cut(s) 106, 311, 320, 704, 755, 770
FatI CATG 6 cut(s) 102, 307, 316, 700, 751, 766
FbaI TGATCA 1 cut(s) 646
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 2 cut(s) 547, 787
FriOI GRGCYC 2 cut(s) 324, 799
Fsp4HI GCNGC 2 cut(s) 547, 787
FspBI CTAG 2 cut(s) 521, 874
GluI GCNGC 2 cut(s) 547, 787
GsaI CCCAGC 1 cut(s) 684
HaeIII GGCC 3 cut(s) 306, 397, 582
HgaI GACGC 1 cut(s) 202
Hin1II CATG 6 cut(s) 106, 311, 320, 704, 755, 770
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 3 cut(s) 71, 175, 730
HphI GGTGA 2 cut(s) 458, 716
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 4 cut(s) 14, 355, 590, 856
Hpy188III TCNNGA 6 cut(s) 26, 131, 217, 464, 521, 800
Hpy8I GTNNAC 1 cut(s) 189
Hpy99I CGWCG 4 cut(s) 14, 193, 218, 856
HpyAV CCTTC 3 cut(s) 52, 602, 642
HpyCH4III ACNGT 2 cut(s) 186, 594
HpyCH4V TGCA 5 cut(s) 37, 501, 530, 766, 789
HpyF3I CTNAG 3 cut(s) 20, 354, 639
Hsp92II CATG 6 cut(s) 106, 311, 320, 704, 755, 770
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 7 cut(s) 325, 566, 625, 646, 706, 810, 868
LmnI GCTCC 1 cut(s) 149
Lsp1109I GCAGC 2 cut(s) 533, 773
LweI GCATC 4 cut(s) 15, 88, 469, 517
MabI ACCWGGT 1 cut(s) 433
MaeI CTAG 2 cut(s) 521, 874
MaeIII GTNAC 2 cut(s) 312, 616
MalI GATC 7 cut(s) 327, 568, 627, 648, 708, 812, 870
MboI GATC 7 cut(s) 325, 566, 625, 646, 706, 810, 868
MboII GAAGA 6 cut(s) 121, 226, 232, 251, 536, 840
MfeI CAATTG 2 cut(s) 32, 122
MflI RGATCY 1 cut(s) 566
MhlI GDGCHC 2 cut(s) 324, 799
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 5 cut(s) 32, 122, 196, 805, 863
MluNI TGGCCA 1 cut(s) 306
MmeI TCCRAC 1 cut(s) 834
Mox20I TGGCCA 1 cut(s) 306
MscI TGGCCA 1 cut(s) 306
MseI TTAA 3 cut(s) 294, 336, 426
Msp20I TGGCCA 1 cut(s) 306
MspR9I CCNGG 2 cut(s) 435, 564
MunI CAATTG 2 cut(s) 32, 122
MvaI CCWGG 2 cut(s) 435, 564
NdeII GATC 7 cut(s) 325, 566, 625, 646, 706, 810, 868
NlaIII CATG 6 cut(s) 106, 311, 320, 704, 755, 770
NmuCI GTSAC 1 cut(s) 616
NspI RCATGY 2 cut(s) 755, 770
NspV TTCGAA 1 cut(s) 237
PaeI GCATGC 1 cut(s) 755
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PfeI GAWTC 3 cut(s) 71, 175, 730
PflMI CCANNNNNTGG 1 cut(s) 440
PkrI GCNGC 2 cut(s) 548, 788
PshBI ATTAAT 1 cut(s) 294
PsiI TTATAA 1 cut(s) 390
Psp124BI GAGCTC 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 433, 562
PspFI CCCAGC 1 cut(s) 680
PspGI CCWGG 2 cut(s) 433, 562
PspPI GGNCC 3 cut(s) 118, 396, 856
PsuI RGATCY 1 cut(s) 566
RsaI GTAC 3 cut(s) 419, 456, 758
RsaNI GTAC 3 cut(s) 418, 455, 757
SacI GAGCTC 1 cut(s) 324
SalI GTCGAC 1 cut(s) 187
SaqAI TTAA 3 cut(s) 294, 336, 426
SatI GCNGC 2 cut(s) 547, 787
Sau3AI GATC 7 cut(s) 325, 566, 625, 646, 706, 810, 868
Sau96I GGNCC 3 cut(s) 118, 396, 856
ScrFI CCNGG 2 cut(s) 435, 564
SduI GDGCHC 2 cut(s) 324, 799
SexAI ACCWGGT 1 cut(s) 433
SfaNI GCATC 4 cut(s) 15, 88, 469, 517
SfuI TTCGAA 1 cut(s) 237
SinI GGWCC 2 cut(s) 118, 856
SmlI CTYRAG 1 cut(s) 798
SmoI CTYRAG 1 cut(s) 798
SphI GCATGC 1 cut(s) 755
Sse9I AATT 5 cut(s) 32, 122, 196, 805, 863
SsiI CCGC 4 cut(s) 86, 147, 153, 458
SspMI CTAG 2 cut(s) 521, 874
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 433, 562
StyI CCWWGG 2 cut(s) 52, 381
TaaI ACNGT 2 cut(s) 186, 594
TaqI TCGA 7 cut(s) 96, 138, 188, 216, 237, 324, 867
TasI AATT 5 cut(s) 32, 122, 196, 805, 863
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 3 cut(s) 71, 175, 730
Tru1I TTAA 3 cut(s) 294, 336, 426
Tru9I TTAA 3 cut(s) 294, 336, 426
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 2 cut(s) 546, 786
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 3 cut(s) 586, 689, 704
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 88
Van91I CCANNNNNTGG 1 cut(s) 440
VpaK11BI GGWCC 2 cut(s) 118, 856
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 1 cut(s) 863
XbaI TCTAGA 1 cut(s) 520
XceI RCATGY 2 cut(s) 755, 770
XmiI GTMKAC 1 cut(s) 188
XspI CTAG 2 cut(s) 521, 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.