Rorug04G0334400

Phytanoyl-CoA dioxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014313
Physical Location & Seq
Reverse (-)
50881393 .. 50881949
557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0334400.1

Sequence Viewer

Length: 507 bp
ATGGCCTGGATTCCTGTGTCAGCAAGATGGAGAAATCTTTGCAAAATATGGAACTTGCAATTGTTTTCCCCCAAAGTTCTTGATGACAACCAAGCCAACCGACGCGTAAAGGTGCAAAAGCTCATCGATAATGTCAATGAAAGCATGAGGGCCGGTGAGGCAACTATCTTCTCTGTGGATTTAGCTGACCCCAGTAGTGAGACAGCTAGGGAGTTCAAGGAGACTGTTTGGGGTATGTTTGAAGAGACAGGGAAACCAAACTTGGCGGACTATTTTCCTTTGCTTAGGAAGCTTGACCTCCAAGGCATAAGGTGGCGCTTGACCTATCACTACCAGAAAATGATAGAGATCTTTGATCGAATGATCCATCAAAGGCTGGTTTCAAGAAAAGGGGACACTTATATCACAACCAATGATATGTTGGATACACTTTTGATCATCAGTAAAGAGAAAATGGAGGATATGGACATGCTCGAAACACAACATTTGTTTCTGGTTGGTCACTAA

Protein Analysis

168

Amino Acids

19.87

Weight (kDa)

6.43

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01490 AT2G01490
fragaria_vesca FvH4_4g32640
malus_domestica MD13G1023900.v1.1 MD16G1026600.v1.1
prunus_persica Prupe.1G326800_v2.0.a1
pyrus_communis pycom16g02240
rosa_chinensis RchiOBHm_Chr4g0441521
rosa_laevigata RLG00000006088
rosa_roxburghii Rroxscaffold_5G00382370 Rroxscaffold_7G00185860
rosa_rugosa Rorug04G0334400 Rorug06G0150600
rosa_samantha Rh4BG399900 Rh4CG414900
rosa_wichuraiana Rw4G033320 Rw6G022810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 105
AciI CCGC 1 cut(s) 266
AclWI GGATC 1 cut(s) 358
AflIII ACRYGT 1 cut(s) 103
AgsI TTSAA 3 cut(s) 217, 242, 384
AjnI CCWGG 1 cut(s) 5
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 4 cut(s) 121, 185, 206, 292
AluI AGCT 4 cut(s) 121, 185, 206, 292
Alw26I GTCTC 3 cut(s) 194, 215, 239
AlwI GGATC 1 cut(s) 358
AoxI GGCC 2 cut(s) 3, 150
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 167
BccI CCATC 2 cut(s) 21, 375
BciT130I CCWGG 1 cut(s) 7
BciVI GTATCC 1 cut(s) 418
BclI TGATCA 1 cut(s) 435
BcoDI GTCTC 3 cut(s) 194, 215, 239
BfaI CTAG 1 cut(s) 207
BfoI RGCGCY 1 cut(s) 319
BfuI GTATCC 1 cut(s) 418
BglI GCCNNNNNGGC 1 cut(s) 158
BglII AGATCT 1 cut(s) 348
Bme1390I CCNGG 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 7
BmrI ACTGGG 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 284
Bsa29I ATCGAT 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 301
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 347
BseBI CCWGG 1 cut(s) 7
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 301
BseJI GATNNNNATC 1 cut(s) 347
BseNI ACTGG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 2 cut(s) 5, 152
BshVI ATCGAT 1 cut(s) 126
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 407
BsmAI GTCTC 3 cut(s) 194, 215, 239
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 2 cut(s) 5, 152
Bsp143I GATC 4 cut(s) 348, 355, 363, 435
BspACI CCGC 1 cut(s) 266
BspANI GGCC 2 cut(s) 5, 152
BspDI ATCGAT 1 cut(s) 126
BspFNI CGCG 1 cut(s) 105
BspPI GGATC 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 4 cut(s) 348, 355, 363, 435
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 284
BstFNI CGCG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 4 cut(s) 351, 358, 366, 438
BstMAI GTCTC 3 cut(s) 194, 215, 239
BstMBI GATC 4 cut(s) 348, 355, 363, 435
BstMWI GCNNNNNNNGC 2 cut(s) 158, 289
BstNI CCWGG 1 cut(s) 7
BstNSI RCATGY 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 5
BstUI CGCG 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 348
BstYI RGATCY 1 cut(s) 348
Bsu15I ATCGAT 1 cut(s) 126
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 2 cut(s) 5, 152
BsuTUI ATCGAT 1 cut(s) 126
CfoI GCGC 1 cut(s) 318
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 150
ClaI ATCGAT 1 cut(s) 126
CseI GACGC 1 cut(s) 111
CviAII CATG 2 cut(s) 145, 469
CviJI RGCY 8 cut(s) 5, 95, 121, 152, 185, 206, 292, 376
CviKI_1 RGCY 8 cut(s) 5, 95, 121, 152, 185, 206, 292, 376
DdeI CTNAG 1 cut(s) 284
DpnI GATC 4 cut(s) 350, 357, 365, 437
DpnII GATC 4 cut(s) 348, 355, 363, 435
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
EciI GGCGGA 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 2 cut(s) 148, 472
FaiI YATR 8 cut(s) 49, 146, 236, 308, 402, 419, 464, 470
FaqI GGGAC 1 cut(s) 407
FatI CATG 2 cut(s) 144, 468
FbaI TGATCA 1 cut(s) 435
FspBI CTAG 1 cut(s) 207
GlaI GCGC 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 2 cut(s) 5, 152
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 318
Hin1II CATG 2 cut(s) 148, 472
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 167
Hpy188III TCNNGA 2 cut(s) 80, 384
Hpy99I CGWCG 1 cut(s) 105
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 42, 58, 115
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 289
HpyF3I CTNAG 1 cut(s) 284
Hsp92II CATG 2 cut(s) 148, 472
HspAI GCGC 1 cut(s) 316
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 4 cut(s) 348, 355, 363, 435
LpnPI CCDG 8 cut(s) 19, 27, 166, 205, 234, 347, 362, 479
MaeI CTAG 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 500
MalI GATC 4 cut(s) 350, 357, 365, 437
MboI GATC 4 cut(s) 348, 355, 363, 435
MboII GAAGA 2 cut(s) 160, 254
MfeI CAATTG 1 cut(s) 59
MflI RGATCY 1 cut(s) 348
MluCI AATT 1 cut(s) 59
MluI ACGCGT 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 402
MnlI CCTC 4 cut(s) 141, 151, 308, 451
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 7
MunI CAATTG 1 cut(s) 59
MvaI CCWGG 1 cut(s) 7
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 158, 289
NdeII GATC 4 cut(s) 348, 355, 363, 435
NlaIII CATG 2 cut(s) 148, 472
NmuCI GTSAC 1 cut(s) 500
NspI RCATGY 1 cut(s) 472
PfeI GAWTC 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspPI GGNCC 1 cut(s) 150
PsuI RGATCY 1 cut(s) 348
Sau3AI GATC 4 cut(s) 348, 355, 363, 435
Sau96I GGNCC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 7
SetI ASST 8 cut(s) 114, 123, 187, 208, 294, 300, 314, 326
Sse9I AATT 1 cut(s) 59
SsiI CCGC 1 cut(s) 266
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 3 cut(s) 126, 358, 474
TasI AATT 1 cut(s) 59
TfiI GAWTC 1 cut(s) 10
TseFI GTSAC 1 cut(s) 500
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 1 cut(s) 153
XceI RCATGY 1 cut(s) 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 418
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.