Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012032

Physical Location & Seq

Genomic Coordinates Forward (+)

405762 .. 409203

Gene Structure 3442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGTGGCCAAGACTTGTGGCCAACAAGATCCTAAGGAAAAGCCTCGGGAGCAACAACTTCGTTGCCGATTTCCCACCTAATACTGATCAGAAGCTTATAGAAGCTTCCGGATTAGCTGATGAACGATCTAAATCAATTCTCCACAACCAACACAAAACCACTCTTCTCAACTACAAGGTTTTTGTAAGCACATGGAACGTGGGTGGTATCGTACCGGACGATGGACTTGACATGGAGGATCTACTGGAAACACATAAAACACCGTGCGACATATACGTGCTTGGGTTTCAAGAGGTTGTGCCTCTACGAGCTTCGAATGTTTTGGGATCAGATAACAACAAAGTCTCTACAAAATGGAACTCTTTGATAAGAGATGCTTTGAACAAGAGAGCAAGACCTCATCGAGACGAAGACTTGTCGGAATCAAAGGGCATTAATGGTATTTCACAAGATTTTAGATGTATCATAAGTAAACAGATGGTCGGAATCTTGATCACCGTTTGGGTCCGAGGTGATCTCTGGCCGTACATCCGTTATCCTAGCGTTTCATGCGTTGGTTGCGGCATCATGGGTTGCTTAGGAAACAAGGGATCAGTATCGGTTAGATTTCAATTGCACGAAACGACATTTTGTTTCGTTTGTAGCCATCTAGCTTCTGGTGGCCGCGACCGAGATGAAAGACAGAGAAACTCCGACGTCAACGAGATCTTAGCTAGATCTAGTTTTCCTCGAGGCTCATCTCTAGATTTACCCAAAAAGATCCTTGATCACGATCGGGTGATTTTTTTGGGAGACTTGAATTATAGAATTTCATTACCGGAGGAGAAGACAAGATTATTGGTGGAAAGCAAAAAATGGAACATCTTACTAGAAAATGATCAGCTGAGGATGGAGATCATGAACGGCCAGATTTTCAGAGGGTGGCAAGAAGGAATTGTCAAATTTGCTCCAACGTATAAATACGTTCCAAATTCGGATTTATATTACGGATGCATTACATACAAAAAAGACGAGAAGAAACGAGCTCCTGCATGGTGTGATCGAATAATATGGTACGGAAATGGACTGAAGCAACATGAATATACAAGAGGAGAAACGAAGATATCTGATCATAGGCCTGTCAAAGCAATTTTCACCACAGAAATTACTGTAACACGGCGTGGTAAAAAGATTCGTAATTTCTTTTTCTCGGACAGATTTGAAGAAAGAATTGGTGACATAGATTCTAAAGACTACTCGTGGATATCTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019637 GO:0030100 GO:0030258 GO:0031323 GO:0032879 GO:0033554 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048259 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051716 GO:0052866 GO:0060627 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0104004 GO:0106019 GO:2000369 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

417

Amino Acids

47.92

Weight (kDa)

9.04

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	72 - 384	8.5e-70	Endonuclease/Exonuclease/phosphatase family 2
Exo_endo_phos	PF03372	72 - 379	3.3e-07	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01900 AT2G01900 AT2G01900
fragaria_vesca	FvH4_4g26100
malus_domestica	MD13G1015800.v1.1 MD16G1013300.v1.1
prunus_persica	Prupe.1G337900_v2.0.a1 Prupe.1G337900_v2.0.a1
pyrus_communis	pycom16g01240
rosa_chinensis	RchiOBHm_Chr4g0433671
rosa_laevigata	RLG00000006740
rosa_multiflora	Rmu_sc0000312.1_g000022
rosa_roxburghii	Rroxscaffold_5G00375110
rosa_rugosa	Rorug04G0270000
rosa_samantha	Rh4AG325000 Rh4BG332700 Rh4CG348000 Rh4DG329400
rosa_wichuraiana	Rw4G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	699
AbsI	CCTCGAGG	1 cut(s)	729
AccII	CGCG	1 cut(s)	666
AccIII	TCCGGA	1 cut(s)	107
AciI	CCGC	2 cut(s)	561, 664
AclWI	GGATC	5 cut(s)	22, 246, 334, 598, 754
AcoI	YGGCCR	5 cut(s)	5, 18, 521, 661, 904
AcsI	RAATTY	3 cut(s)	807, 941, 970
AcuI	CTGAAG	1 cut(s)	1088
AcyI	GRCGYC	1 cut(s)	696
AdeI	CACNNNGTG	1 cut(s)	1160
AfaI	GTAC	3 cut(s)	213, 527, 1055
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	5 cut(s)	290, 382, 611, 799, 1202
AjuI	GAANNNNNNNTTGG	2 cut(s)	1194, 1226
AluBI	AGCT	8 cut(s)	94, 104, 116, 311, 653, 713, 883, 1025
AluI	AGCT	8 cut(s)	94, 104, 116, 311, 653, 713, 883, 1025
Alw21I	GWGCWC	1 cut(s)	1027
Alw26I	GTCTC	3 cut(s)	349, 399, 786
AlwI	GGATC	5 cut(s)	22, 246, 334, 598, 754
Ama87I	CYCGRG	2 cut(s)	44, 729
Aor13HI	TCCGGA	1 cut(s)	107
AoxI	GGCC	6 cut(s)	5, 18, 521, 661, 904, 1115
ApoI	RAATTY	3 cut(s)	807, 941, 970
AseI	ATTAAT	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	505
AsuHPI	GGTGA	5 cut(s)	487, 524, 790, 1126, 1226
AsuII	TTCGAA	1 cut(s)	314
AvaI	CYCGRG	2 cut(s)	44, 729
AvaII	GGWCC	1 cut(s)	505
AxyI	CCTNAGG	1 cut(s)	32
BalI	TGGCCA	2 cut(s)	7, 20
BanII	GRGCYC	1 cut(s)	1027
BauI	CACGAG	1 cut(s)	1237
BbsI	GAAGAC	2 cut(s)	417, 833
Bbv12I	GWGCWC	1 cut(s)	1027
BbvCI	CCTCAGC	1 cut(s)	884
BccI	CCATC	4 cut(s)	215, 472, 654, 883
BceAI	ACGGC	3 cut(s)	508, 919, 1172
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BclI	TGATCA	5 cut(s)	85, 492, 766, 877, 1108
BcoDI	GTCTC	3 cut(s)	349, 399, 786
BfaI	CTAG	6 cut(s)	540, 650, 714, 720, 743, 869
BglII	AGATCT	2 cut(s)	705, 716
BisI	GCNGC	2 cut(s)	562, 664
BlsI	GCNGC	2 cut(s)	563, 665
Bme18I	GGWCC	1 cut(s)	505
BmeT110I	CYCGRG	2 cut(s)	44, 729
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	1 cut(s)	506
BmsI	GCATC	3 cut(s)	364, 573, 980
BpiI	GAAGAC	2 cut(s)	417, 833
BplI	GAGNNNNNCTC	2 cut(s)	501, 533
Bpu10I	CCTNAGC	2 cut(s)	577, 884
Bpu14I	TTCGAA	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	277
BsaBI	GATNNNNATC	4 cut(s)	130, 595, 771, 893
BsaHI	GRCGYC	1 cut(s)	696
BsaJI	CCNNGG	2 cut(s)	43, 508
BsaWI	WCCGGW	3 cut(s)	107, 214, 817
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	249
Bse21I	CCTNAGG	1 cut(s)	32
Bse8I	GATNNNNATC	4 cut(s)	130, 595, 771, 893
BseAI	TCCGGA	1 cut(s)	107
BseDI	CCNNGG	2 cut(s)	43, 508
BseGI	GGATG	3 cut(s)	528, 894, 995
BseJI	GATNNNNATC	4 cut(s)	130, 595, 771, 893
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	875
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	2 cut(s)	836, 1104
Bsh1236I	CGCG	1 cut(s)	666
Bsh1285I	CGRYCG	2 cut(s)	670, 775
BshFI	GGCC	6 cut(s)	7, 20, 523, 663, 906, 1117
BsiEI	CGRYCG	2 cut(s)	670, 775
BsiHKAI	GWGCWC	1 cut(s)	1027
BsiHKCI	CYCGRG	2 cut(s)	44, 729
BsiSI	CCGG	3 cut(s)	108, 215, 818
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	3 cut(s)	349, 399, 786
BsmBI	CGTCTC	1 cut(s)	399
BsnI	GGCC	6 cut(s)	7, 20, 523, 663, 906, 1117
BsoBI	CYCGRG	2 cut(s)	44, 729
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	1027
Bsp13I	TCCGGA	1 cut(s)	107
BspACI	CCGC	2 cut(s)	561, 664
BspANI	GGCC	6 cut(s)	7, 20, 523, 663, 906, 1117
BspCNI	CTCAG	1 cut(s)	876
BspEI	TCCGGA	1 cut(s)	107
BspFNI	CGCG	1 cut(s)	666
BspHI	TCATGA	1 cut(s)	897
BspLI	GGNNCC	1 cut(s)	506
BspPI	GGATC	5 cut(s)	22, 246, 334, 598, 754
BspT104I	TTCGAA	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	43, 508
BssNI	GRCGYC	1 cut(s)	696
BssSI	CACGAG	1 cut(s)	1237
Bst2BI	CACGAG	1 cut(s)	1237
Bst4CI	ACNGT	3 cut(s)	264, 499, 1150
Bst6I	CTCTTC	1 cut(s)	168
BstACI	GRCGYC	1 cut(s)	696
BstBAI	YACGTR	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	314
BstDEI	CTNAG	4 cut(s)	32, 577, 709, 884
BstF5I	GGATG	3 cut(s)	528, 894, 995
BstFNI	CGCG	1 cut(s)	666
BstMAI	GTCTC	3 cut(s)	349, 399, 786
BstMCI	CGRYCG	2 cut(s)	670, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 549, 558
BstUI	CGCG	1 cut(s)	666
BstV2I	GAAGAC	2 cut(s)	417, 833
BstX2I	RGATCY	5 cut(s)	27, 238, 705, 716, 759
BstYI	RGATCY	5 cut(s)	27, 238, 705, 716, 759
Bsu36I	CCTNAGG	1 cut(s)	32
BsuRI	GGCC	6 cut(s)	7, 20, 523, 663, 906, 1117
BtsCI	GGATG	3 cut(s)	528, 894, 995
CciI	TCATGA	1 cut(s)	897
Cfr13I	GGNCC	1 cut(s)	505
Csp6I	GTAC	3 cut(s)	212, 526, 1054
CspCI	CAANNNNNGTGG	1 cut(s)	32
CviAII	CATG	7 cut(s)	192, 232, 549, 568, 898, 1032, 1076
CviQI	GTAC	3 cut(s)	212, 526, 1054
DdeI	CTNAG	4 cut(s)	32, 577, 709, 884
DraIII	CACNNNGTG	1 cut(s)	1160
EaeI	YGGCCR	5 cut(s)	5, 18, 521, 661, 904
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	1025
Eco147I	AGGCCT	1 cut(s)	1117
Eco24I	GRGCYC	1 cut(s)	1027
Eco32I	GATATC	2 cut(s)	1104, 1245
Eco47I	GGWCC	1 cut(s)	505
Eco53kI	GAGCTC	1 cut(s)	1025
Eco57I	CTGAAG	1 cut(s)	1088
Eco81I	CCTNAGG	1 cut(s)	32
Eco88I	CYCGRG	2 cut(s)	44, 729
EcoICRI	GAGCTC	1 cut(s)	1025
EcoRV	GATATC	2 cut(s)	1104, 1245
EcoT22I	ATGCAT	1 cut(s)	995
EcoT38I	GRGCYC	1 cut(s)	1027
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	7 cut(s)	195, 235, 552, 571, 901, 1035, 1079
FalI	AAGNNNNNCTT	2 cut(s)	361, 393
FatI	CATG	7 cut(s)	191, 231, 548, 567, 897, 1031, 1075
FbaI	TGATCA	5 cut(s)	85, 492, 766, 877, 1108
Fnu4HI	GCNGC	2 cut(s)	562, 664
FokI	GGATG	3 cut(s)	515, 901, 1002
FriOI	GRGCYC	1 cut(s)	1027
Fsp4HI	GCNGC	2 cut(s)	562, 664
FspBI	CTAG	6 cut(s)	540, 650, 714, 720, 743, 869
GluI	GCNGC	2 cut(s)	562, 664
HaeIII	GGCC	6 cut(s)	7, 20, 523, 663, 906, 1117
HapII	CCGG	3 cut(s)	108, 215, 818
Hin1I	GRCGYC	1 cut(s)	696
Hin1II	CATG	7 cut(s)	195, 235, 552, 571, 901, 1035, 1079
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HindIII	AAGCTT	2 cut(s)	92, 102
HinfI	GANTC	4 cut(s)	422, 486, 1171, 1223
HpaII	CCGG	3 cut(s)	108, 215, 818
HphI	GGTGA	5 cut(s)	487, 524, 790, 1126, 1226
Hpy166II	GTNNAC	2 cut(s)	473, 700
Hpy188III	TCNNGA	8 cut(s)	46, 108, 290, 404, 490, 743, 770, 898
Hpy8I	GTNNAC	2 cut(s)	473, 700
Hpy99I	CGWCG	1 cut(s)	698
HpyAV	CCTTC	1 cut(s)	923
HpyCH4III	ACNGT	3 cut(s)	264, 499, 1150
HpyCH4IV	ACGT	5 cut(s)	198, 276, 696, 953, 963
HpyCH4V	TGCA	3 cut(s)	616, 993, 1031
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 549, 558
HpyF3I	CTNAG	4 cut(s)	32, 577, 709, 884
HpySE526I	ACGT	5 cut(s)	198, 276, 696, 953, 963
Hsp92I	GRCGYC	1 cut(s)	696
Hsp92II	CATG	7 cut(s)	195, 235, 552, 571, 901, 1035, 1079
Kpn2I	TCCGGA	1 cut(s)	107
Ksp22I	TGATCA	5 cut(s)	85, 492, 766, 877, 1108
LmnI	GCTCC	3 cut(s)	48, 952, 1030
LpnPI	CCDG	9 cut(s)	121, 228, 230, 505, 642, 831, 920, 1041, 1131
LweI	GCATC	3 cut(s)	364, 573, 980
MaeI	CTAG	6 cut(s)	540, 650, 714, 720, 743, 869
MaeII	ACGT	5 cut(s)	198, 276, 696, 953, 963
MaeIII	GTNAC	2 cut(s)	1150, 1214
MboII	GAAGA	6 cut(s)	155, 422, 838, 1027, 1111, 1214
MfeI	CAATTG	1 cut(s)	611
MflI	RGATCY	5 cut(s)	27, 238, 705, 716, 759
MhlI	GDGCHC	1 cut(s)	1027
MlsI	TGGCCA	2 cut(s)	7, 20
MluNI	TGGCCA	2 cut(s)	7, 20
MmeI	TCCRAC	4 cut(s)	399, 463, 717, 974
Mox20I	TGGCCA	2 cut(s)	7, 20
Mph1103I	ATGCAT	1 cut(s)	995
MroI	TCCGGA	1 cut(s)	107
MscI	TGGCCA	2 cut(s)	7, 20
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	2 cut(s)	7, 20
MspA1I	CMGCKG	1 cut(s)	883
MspI	CCGG	3 cut(s)	108, 215, 818
MunI	CAATTG	1 cut(s)	611
MvnI	CGCG	1 cut(s)	666
MwoI	GCNNNNNNNGC	3 cut(s)	48, 549, 558
NlaIII	CATG	7 cut(s)	195, 235, 552, 571, 901, 1035, 1079
NlaIV	GGNNCC	1 cut(s)	506
NmuCI	GTSAC	1 cut(s)	1214
NsiI	ATGCAT	1 cut(s)	995
NspV	TTCGAA	1 cut(s)	314
PaeR7I	CTCGAG	1 cut(s)	729
PagI	TCATGA	1 cut(s)	897
PceI	AGGCCT	1 cut(s)	1117
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	4 cut(s)	422, 486, 1171, 1223
PkrI	GCNGC	2 cut(s)	563, 665
Ple19I	CGATCG	1 cut(s)	775
Ppu21I	YACGTR	1 cut(s)	277
PshBI	ATTAAT	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	1027
PspN4I	GGNNCC	1 cut(s)	506
PspPI	GGNCC	1 cut(s)	505
PspXI	VCTCGAGB	1 cut(s)	729
PsuI	RGATCY	5 cut(s)	27, 238, 705, 716, 759
PvuI	CGATCG	1 cut(s)	775
PvuII	CAGCTG	1 cut(s)	883
RsaI	GTAC	3 cut(s)	213, 527, 1055
RsaNI	GTAC	3 cut(s)	212, 526, 1054
RseI	CAYNNNNRTG	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	1027
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	2 cut(s)	562, 664
Sau96I	GGNCC	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	1027
SfaNI	GCATC	3 cut(s)	364, 573, 980
Sfr274I	CTCGAG	1 cut(s)	729
SfuI	TTCGAA	1 cut(s)	314
SinI	GGWCC	1 cut(s)	505
SlaI	CTCGAG	1 cut(s)	729
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	729
SmoI	CTYRAG	1 cut(s)	729
SseBI	AGGCCT	1 cut(s)	1117
SsiI	CCGC	2 cut(s)	561, 664
SspMI	CTAG	6 cut(s)	540, 650, 714, 720, 743, 869
SstI	GAGCTC	1 cut(s)	1027
StuI	AGGCCT	1 cut(s)	1117
TaaI	ACNGT	3 cut(s)	264, 499, 1150
TaiI	ACGT	5 cut(s)	201, 279, 699, 956, 966
TaqI	TCGA	4 cut(s)	314, 403, 730, 1042
TaqII	GACCGA	1 cut(s)	684
TauI	GCSGC	2 cut(s)	564, 666
TfiI	GAWTC	4 cut(s)	422, 486, 1171, 1223
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	1214
Tsp45I	GTSAC	1 cut(s)	1214
TspDTI	ATGAA	6 cut(s)	135, 537, 690, 801, 914, 1092
TspGWI	ACGGA	3 cut(s)	521, 1002, 1071
VpaK11BI	GGWCC	1 cut(s)	505
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	3 cut(s)	807, 941, 970
XbaI	TCTAGA	1 cut(s)	742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XhoI	CTCGAG	1 cut(s)	729
XspI	CTAG	6 cut(s)	540, 650, 714, 720, 743, 869
ZraI	GACGTC	1 cut(s)	697
Zsp2I	ATGCAT	1 cut(s)	995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.