Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0012032

Physical Location & Seq

Genomic Coordinates Forward (+)

54833699 .. 54837650

Gene Structure 3952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGATTCGTGTGATCATGTGGCCTAGATTAGTGGCGAACAAAATTCTGAAGAAGCGATTGGGAAGCAACAACTTTGTAGCAGATTTCCCAAGCAACTCGGAAGACTCCACCTTGCAGCTGGAAACACCAAGTTTTGATCCAGAGAAACCGTTATCTTTATGCCCGACGACACCAGCTCCAAAAATCTTGAATCACCACAAGCACACACACAGTTACAAGGTTTTTGTTAGTACGTGGAATGTTGGTGGAGTTGAACCACGAGATGATATGAACATGGCGGATTGGATTACTGACACATCCTGTGACATCTATGTTTTTGGGTTTCAAGAAATTGTTCCTCTCAAAGCCTCAAATGTTCTGGGATCTGAGAATAGTATGATCTGCATGAAGTGGAATTCCTTCATTAGAGAAACTTTGAACAAGAAAATAAACCACCCGGGAGACAAGAATAAGGAAAAAAATGGAAAGTCAACCATTGTGGAAAGCAGCACTAATCCAGAATCACAGGATTACTTCCAGTGTATTATAAGTAAGCAAATGGTGGGAATACTAATAACAGTCTGGGTTCGAAGAAATCTTCGTCCTTTGATTCGGAATCCGAGTGTTTCATGTGTTGGCTGTGGCATCATGGGTTGCCTCGGCAATAAGGGTTCGGTTTCAGTTAGGTTTCAACTGCATGAAACAAGCTTCTGCTTCGTGTGCTGTCATCTAGCTTCGGGGGGAAGACAAGGAGATGAGAAACTCAGAAACTCGAACGTAGCTGAAATCTTGAACAGAACAAGTTTCCCTAGAGGTCCATTGCTTGATTTGCCACGAAAGATCCCAGACCACCAACGAGTAATCTTCTTGGGAGATTTGAATTACAGAATTTCCCTTCCAGAAGCAACCACACGGTCATTAGTGGATAGCAGAGATTGGAATGCCTTACTGAAGAGCGATCAGCTGAGTATGGAGCTCAATGATGGTCAAGTATTTGAAGGTTGGCTTGAAGGAAGTATCAAATTTGCCCCGACTTACAAATATTTTCCAGATTCTGATACATATTATGGATGTCCTCCTCCTGCAAGGAAAGGTGAAAAGAGGCGTGCTCCTGCATGGTGTGATCGGATAATTTGGTATGGAAAAGGGTTGAAGCAACATGTATACGACCGAGGTGAATCAAAATTGTCTGACCACAGGCCAGTGAAGTCAATATTTACTGCCCAAGTTGAAGTTCTACCATCGCTTATGAGAGGATACCAAAGCTTTTTTCTTTCAGACAGGTTTGACAAAATTTCAAGCCAGTTTGACGTACCCTCCACCGACGATCGATTTCTATGTCATCGCAGATCATCAAGCTTCAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019637 GO:0030100 GO:0030258 GO:0031323 GO:0032879 GO:0033554 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048259 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051716 GO:0052866 GO:0060627 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0104004 GO:0106019 GO:2000369 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

449

Amino Acids

51.07

Weight (kDa)

9.05

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	78 - 397	7.3e-69	Endonuclease/Exonuclease/phosphatase family 2
Exo_endo_phos	PF03372	78 - 392	5.1e-06	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01900 AT2G01900 AT2G01900
fragaria_vesca	FvH4_4g26100
malus_domestica	MD13G1015800.v1.1 MD16G1013300.v1.1
prunus_persica	Prupe.1G337900_v2.0.a1 Prupe.1G337900_v2.0.a1
pyrus_communis	pycom16g01240
rosa_chinensis	RchiOBHm_Chr4g0433671
rosa_laevigata	RLG00000006740
rosa_multiflora	Rmu_sc0000312.1_g000022
rosa_roxburghii	Rroxscaffold_5G00375110
rosa_rugosa	Rorug04G0270000
rosa_samantha	Rh4AG325000 Rh4BG332700 Rh4CG348000 Rh4DG329400
rosa_wichuraiana	Rw4G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	1143
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	3 cut(s)	131, 370, 814
AcsI	RAATTY	5 cut(s)	42, 394, 867, 1001, 1272
AcuI	CTGAAG	2 cut(s)	68, 950
AfaI	GTAC	2 cut(s)	232, 1293
AflIII	ACRYGT	1 cut(s)	1138
AjuI	GAANNNNNNNTTGG	6 cut(s)	41, 73, 1197, 1229, 1233, 1265
Alw21I	GWGCWC	2 cut(s)	957, 1090
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	3 cut(s)	131, 370, 814
AlwNI	CAGNNNCTG	1 cut(s)	1034
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	2 cut(s)	20, 1178
ApeKI	GCWGC	2 cut(s)	115, 486
ApoI	RAATTY	5 cut(s)	42, 394, 867, 1001, 1272
Asp700I	GAANNNNTTC	2 cut(s)	333, 398
AspS9I	GGNCC	1 cut(s)	794
AsuC2I	CCSGG	2 cut(s)	437, 438
AsuHPI	GGTGA	3 cut(s)	185, 1085, 1166
AsuII	TTCGAA	1 cut(s)	568
AvaI	CYCGRG	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	794
BanII	GRGCYC	1 cut(s)	957
BauI	CACGAG	1 cut(s)	258
BbsI	GAAGAC	2 cut(s)	108, 730
Bbv12I	GWGCWC	2 cut(s)	957, 1090
BbvI	GCAGC	2 cut(s)	127, 498
BccI	CCATC	2 cut(s)	956, 1228
BciVI	GTATCC	1 cut(s)	1229
BclI	TGATCA	1 cut(s)	12
BcnI	CCSGG	2 cut(s)	437, 438
BcoDI	GTCTC	1 cut(s)	435
BfaI	CTAG	3 cut(s)	24, 710, 789
BfuI	GTATCC	1 cut(s)	1229
BisI	GCNGC	2 cut(s)	116, 487
BlsI	GCNGC	2 cut(s)	117, 488
Bme1390I	CCNGG	2 cut(s)	437, 438
Bme18I	GGWCC	1 cut(s)	794
BmeT110I	CYCGRG	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	794
BmrFI	CCNGG	2 cut(s)	437, 438
BmsI	GCATC	1 cut(s)	633
BpiI	GAAGAC	2 cut(s)	108, 730
BplI	GAGNNNNNCTC	2 cut(s)	1072, 1104
Bpu14I	TTCGAA	1 cut(s)	568
BpuMI	CCSGG	2 cut(s)	437, 438
Bsa29I	ATCGAT	1 cut(s)	1309
BsaAI	YACGTR	1 cut(s)	234
BsaJI	CCNNGG	3 cut(s)	436, 637, 1150
BsaXI	ACNNNNNCTCC	4 cut(s)	160, 190, 1280, 1310
Bse1I	ACTGG	3 cut(s)	517, 1181, 1282
Bse3DI	GCAATG	1 cut(s)	797
BseCI	ATCGAT	1 cut(s)	1309
BseDI	CCNNGG	3 cut(s)	436, 637, 1150
BseGI	GGATG	2 cut(s)	296, 1055
BseMI	GCAATG	1 cut(s)	797
BseMII	CTCAG	3 cut(s)	357, 757, 935
BseNI	ACTGG	3 cut(s)	517, 1181, 1282
BseRI	GAGGAG	1 cut(s)	1047
BseXI	GCAGC	2 cut(s)	127, 498
Bsh1285I	CGRYCG	2 cut(s)	1150, 1309
BshFI	GGCC	2 cut(s)	22, 1180
BshVI	ATCGAT	1 cut(s)	1309
BsiEI	CGRYCG	2 cut(s)	1150, 1309
BsiHKAI	GWGCWC	2 cut(s)	957, 1090
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	437
BsmAI	GTCTC	1 cut(s)	435
BsmI	GAATGC	1 cut(s)	925
BsnI	GGCC	2 cut(s)	22, 1180
BsoBI	CYCGRG	1 cut(s)	436
Bsp119I	TTCGAA	1 cut(s)	568
Bsp1286I	GDGCHC	2 cut(s)	957, 1090
Bsp143I	GATC	9 cut(s)	12, 136, 362, 378, 819, 937, 1102, 1306, 1328
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	2 cut(s)	22, 1180
BspCNI	CTCAG	3 cut(s)	358, 756, 936
BspDI	ATCGAT	1 cut(s)	1309
BspPI	GGATC	3 cut(s)	131, 370, 814
BspQI	GCTCTTC	1 cut(s)	926
BspT104I	TTCGAA	1 cut(s)	568
BsrDI	GCAATG	1 cut(s)	797
BsrI	ACTGG	3 cut(s)	517, 1181, 1282
BssECI	CCNNGG	3 cut(s)	436, 637, 1150
BssMI	GATC	9 cut(s)	12, 136, 362, 378, 819, 937, 1102, 1306, 1328
BssNAI	GTATAC	1 cut(s)	1144
BssSI	CACGAG	1 cut(s)	258
Bst1107I	GTATAC	1 cut(s)	1144
Bst2BI	CACGAG	1 cut(s)	258
Bst4CI	ACNGT	4 cut(s)	150, 212, 559, 894
Bst6I	CTCTTC	1 cut(s)	926
BstBAI	YACGTR	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	568
BstC8I	GCNNGC	1 cut(s)	1086
BstDEI	CTNAG	3 cut(s)	366, 743, 944
BstF5I	GGATG	2 cut(s)	296, 1055
BstKTI	GATC	9 cut(s)	15, 139, 365, 381, 822, 940, 1105, 1309, 1331
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	9 cut(s)	12, 136, 362, 378, 819, 937, 1102, 1306, 1328
BstMCI	CGRYCG	2 cut(s)	1150, 1309
BstMWI	GCNNNNNNNGC	2 cut(s)	699, 808
BstNSI	RCATGY	1 cut(s)	1142
BstSCI	CCNGG	2 cut(s)	435, 436
BstV1I	GCAGC	2 cut(s)	127, 498
BstV2I	GAAGAC	2 cut(s)	108, 730
BstX2I	RGATCY	2 cut(s)	362, 819
BstYI	RGATCY	2 cut(s)	362, 819
BstZ17I	GTATAC	1 cut(s)	1144
Bsu15I	ATCGAT	1 cut(s)	1309
BsuI	GTATCC	1 cut(s)	1229
BsuRI	GGCC	2 cut(s)	22, 1180
BsuTUI	ATCGAT	1 cut(s)	1309
BtgZI	GCGATG	2 cut(s)	1206, 1307
BtsCI	GGATG	2 cut(s)	296, 1055
BtsIMutI	CAGTG	2 cut(s)	524, 1188
Cac8I	GCNNGC	1 cut(s)	1086
CaiI	CAGNNNCTG	1 cut(s)	1034
Cfr13I	GGNCC	1 cut(s)	794
Cfr9I	CCCGGG	1 cut(s)	436
ClaI	ATCGAT	1 cut(s)	1309
Csp6I	GTAC	2 cut(s)	231, 1292
CspCI	CAANNNNNGTGG	2 cut(s)	459, 494
CviAII	CATG	8 cut(s)	16, 274, 385, 609, 628, 677, 1095, 1139
CviQI	GTAC	2 cut(s)	231, 1292
DdeI	CTNAG	3 cut(s)	366, 743, 944
DpnI	GATC	9 cut(s)	14, 138, 364, 380, 821, 939, 1104, 1308, 1330
DpnII	GATC	9 cut(s)	12, 136, 362, 378, 819, 937, 1102, 1306, 1328
Eam1104I	CTCTTC	1 cut(s)	926
EarI	CTCTTC	1 cut(s)	926
EciI	GGCGGA	1 cut(s)	293
Ecl136II	GAGCTC	1 cut(s)	955
Eco24I	GRGCYC	1 cut(s)	957
Eco47I	GGWCC	1 cut(s)	794
Eco53kI	GAGCTC	1 cut(s)	955
Eco57I	CTGAAG	2 cut(s)	68, 950
Eco88I	CYCGRG	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	955
EcoRI	GAATTC	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	957
FaeI	CATG	8 cut(s)	19, 277, 388, 612, 631, 680, 1098, 1142
FalI	AAGNNNNNCTT	2 cut(s)	969, 1001
FatI	CATG	8 cut(s)	15, 273, 384, 608, 627, 676, 1094, 1138
FbaI	TGATCA	1 cut(s)	12
FblI	GTMKAC	1 cut(s)	1143
Fnu4HI	GCNGC	2 cut(s)	116, 487
FokI	GGATG	2 cut(s)	283, 1062
FriOI	GRGCYC	1 cut(s)	957
Fsp4HI	GCNGC	2 cut(s)	116, 487
FspBI	CTAG	3 cut(s)	24, 710, 789
GluI	GCNGC	2 cut(s)	116, 487
HaeIII	GGCC	2 cut(s)	22, 1180
HapII	CCGG	1 cut(s)	437
Hin1II	CATG	8 cut(s)	19, 277, 388, 612, 631, 680, 1098, 1142
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HindIII	AAGCTT	4 cut(s)	685, 1243, 1336, 1344
HinfI	GANTC	8 cut(s)	4, 104, 190, 500, 589, 595, 1031, 1157
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	3 cut(s)	185, 1085, 1166
Hpy166II	GTNNAC	2 cut(s)	471, 1144
Hpy188III	TCNNGA	7 cut(s)	140, 187, 326, 497, 769, 878, 1028
Hpy8I	GTNNAC	2 cut(s)	471, 1144
Hpy99I	CGWCG	2 cut(s)	169, 1307
HpyAV	CCTTC	4 cut(s)	409, 884, 971, 983
HpyCH4III	ACNGT	4 cut(s)	150, 212, 559, 894
HpyCH4IV	ACGT	3 cut(s)	233, 756, 1290
HpyCH4V	TGCA	5 cut(s)	115, 384, 676, 1064, 1094
HpyF10VI	GCNNNNNNNGC	2 cut(s)	699, 808
HpyF3I	CTNAG	3 cut(s)	366, 743, 944
HpySE526I	ACGT	3 cut(s)	233, 756, 1290
Hsp92II	CATG	8 cut(s)	19, 277, 388, 612, 631, 680, 1098, 1142
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	9 cut(s)	12, 136, 362, 378, 819, 937, 1102, 1306, 1328
LguI	GCTCTTC	1 cut(s)	926
LmnI	GCTCC	3 cut(s)	181, 952, 1093
Lsp1109I	GCAGC	2 cut(s)	127, 498
LweI	GCATC	1 cut(s)	633
MaeI	CTAG	3 cut(s)	24, 710, 789
MaeII	ACGT	3 cut(s)	233, 756, 1290
MaeIII	GTNAC	2 cut(s)	212, 302
MalI	GATC	9 cut(s)	14, 138, 364, 380, 821, 939, 1104, 1308, 1330
MboI	GATC	9 cut(s)	12, 136, 362, 378, 819, 937, 1102, 1306, 1328
MboII	GAAGA	7 cut(s)	61, 113, 569, 582, 735, 835, 943
MflI	RGATCY	2 cut(s)	362, 819
MhlI	GDGCHC	2 cut(s)	957, 1090
MluCI	AATT	9 cut(s)	42, 330, 394, 859, 867, 1001, 1110, 1163, 1272
MlyI	GAGTC	1 cut(s)	98
MroXI	GAANNNNTTC	2 cut(s)	333, 398
MspA1I	CMGCKG	2 cut(s)	118, 943
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	2 cut(s)	437, 438
Mva1269I	GAATGC	1 cut(s)	925
MwoI	GCNNNNNNNGC	2 cut(s)	699, 808
NciI	CCSGG	2 cut(s)	437, 438
NdeII	GATC	9 cut(s)	12, 136, 362, 378, 819, 937, 1102, 1306, 1328
NlaIII	CATG	8 cut(s)	19, 277, 388, 612, 631, 680, 1098, 1142
NmeAIII	GCCGAG	1 cut(s)	618
NmuCI	GTSAC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	1142
NspV	TTCGAA	1 cut(s)	568
PciI	ACATGT	1 cut(s)	1138
PciSI	GCTCTTC	1 cut(s)	926
PctI	GAATGC	1 cut(s)	925
PdmI	GAANNNNTTC	2 cut(s)	333, 398
PfeI	GAWTC	7 cut(s)	4, 190, 500, 589, 595, 1031, 1157
PkrI	GCNGC	2 cut(s)	117, 488
Ple19I	CGATCG	1 cut(s)	1309
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	234
PscI	ACATGT	1 cut(s)	1138
PsiI	TTATAA	1 cut(s)	527
Psp124BI	GAGCTC	1 cut(s)	957
PspPI	GGNCC	1 cut(s)	794
PstNI	CAGNNNCTG	1 cut(s)	1034
PsuI	RGATCY	2 cut(s)	362, 819
PvuI	CGATCG	1 cut(s)	1309
PvuII	CAGCTG	2 cut(s)	118, 943
RsaI	GTAC	2 cut(s)	232, 1293
RsaNI	GTAC	2 cut(s)	231, 1292
SacI	GAGCTC	1 cut(s)	957
SapI	GCTCTTC	1 cut(s)	926
SatI	GCNGC	2 cut(s)	116, 487
Sau3AI	GATC	9 cut(s)	12, 136, 362, 378, 819, 937, 1102, 1306, 1328
Sau96I	GGNCC	1 cut(s)	794
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	437, 438
SduI	GDGCHC	2 cut(s)	957, 1090
SfaNI	GCATC	1 cut(s)	633
SfuI	TTCGAA	1 cut(s)	568
SinI	GGWCC	1 cut(s)	794
SmaI	CCCGGG	1 cut(s)	438
Sse9I	AATT	9 cut(s)	42, 330, 394, 859, 867, 1001, 1110, 1163, 1272
SsiI	CCGC	1 cut(s)	278
SspI	AATATT	2 cut(s)	1022, 1194
SspMI	CTAG	3 cut(s)	24, 710, 789
SstI	GAGCTC	1 cut(s)	957
StyD4I	CCNGG	2 cut(s)	435, 436
TaaI	ACNGT	4 cut(s)	150, 212, 559, 894
TaiI	ACGT	3 cut(s)	236, 759, 1293
TaqI	TCGA	3 cut(s)	568, 752, 1309
TaqII	GACCGA	1 cut(s)	1164
TasI	AATT	9 cut(s)	42, 330, 394, 859, 867, 1001, 1110, 1163, 1272
TfiI	GAWTC	7 cut(s)	4, 190, 500, 589, 595, 1031, 1157
TscAI	CASTG	2 cut(s)	524, 1188
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	2 cut(s)	115, 486
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	5 cut(s)	284, 391, 401, 597, 693
TspMI	CCCGGG	1 cut(s)	436
TspRI	CASTG	2 cut(s)	524, 1188
VpaK11BI	GGWCC	1 cut(s)	794
XapI	RAATTY	5 cut(s)	42, 394, 867, 1001, 1272
XceI	RCATGY	1 cut(s)	1142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XmaI	CCCGGG	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	1143
XmnI	GAANNNNTTC	2 cut(s)	333, 398
XspI	CTAG	3 cut(s)	24, 710, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.