Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012032

Physical Location & Seq

Genomic Coordinates Forward (+)

27646370 .. 27649874

Gene Structure 3505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGACTGCAACTGCAAGAAATCAAAGAGAAGTGATCATGTGGCCTAGACTTGTAGCGAACAAGATTCTGAAGAAGCGATTAGGAAGCAACAACTTTGTAGCGGATTTCCCAAACAACTCCGAGGACTCCACCTTGCCCCTGGAAACACCGAGTTTTGATCCAGAGAAACCGTTATCTTTAAGCCCGACGACACCAGCTCCGAAGATTTTGAATCATGATCACAAAGCCACACACAATTACAAGGTTTTTGTGAGTACATGGAATGTTGGTGGAGTTGAACCACGAGATGATATGAACATGACGGATTGGATTAATGACACCTCCTGTGACATATATGTTTTCGGGTTTCAAGAAATTGTTCCTCTTAAAGCTTCAAATGTTCTGGGATCTGAGAATAGTACGATCTGCATGAAGTGGAACTCATTCATTAGAGAAACATTGAACAAGAAAATGAACTACCCGGGAGACAAGAGTAGAGACAAAAATGGGAATTCAACCACTGTGGAAAGCAGCAATAATAATCCAGAATCACACGATTACTTCCAGTGTATTATAAGTAAGCAAATGGTGGGAATACTAATAACAGTCTGGGTTCGAAGAAATCTTCGTCCTCTGATTCGAAATCCCAGTGTTTCATGTGTTGGCTGTGGCATCATGGGTTGCCTCGGCAATAAGGGTTCAGTGTCGGTTAGGTTTCAACTGCATGAAACAAGCTTCTGCTTCGTGTGCTGTCATCTAGCTTCAGGAGGAAGACTAGGAGATGAGAAACTCAGAAACTCAAACGTAGCTGAAATCATGAACAGAACAAGTTTCCCTAGAGGTCCTTTGCTTGATTTGCCAAGAAAGATCCTGGACCACCAACGAGTGATCTTCCTGGGAGATTTGAATTACAGAATTTCCCTTCCAGAAGCAACCACACGATCATTAGTGGATTGCAAAGATTGGAAGGTCTTACTGAAGAGCGATCAGCTGAGTATGGAGCTGAATGATGGTCAAGTATTTGAAGGCTGGCTTGAAGGGAGTATCAAATTTGCCCCGACTTACAAATATTTTCCAGATTCTGATACATATTATGGGTCTCCTTCTCCTGCAAGAAAAGGTGAAAAGAGGCGTGCTCCTGCATGGTGTGATCGGATAATCTGGTATGGAACTGGTTTGAAGCAACATGTATACGACAGAGGCGAATCGAAGTTGTCCGATCACAGGCCAGTGAAGTCAATATTTACCGCCCAAGTTGAAGTTTTACCATCGCTTATGAGAGGATACCAGAGCTTTTTTCTTTCAGACAGGTTTGACAAAATTTCAAGTCAGTTTGATCAGGTACCCTCCACCGACGATCGTTATCTATGTCAACGTAGATCATCAAGCTTCAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019637 GO:0030100 GO:0030258 GO:0031323 GO:0032879 GO:0033554 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048259 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051716 GO:0052866 GO:0060627 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0104004 GO:0106019 GO:2000369 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

460

Amino Acids

52.2

Weight (kDa)

8.94

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	86 - 406	5.9e-68	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01900 AT2G01900 AT2G01900
fragaria_vesca	FvH4_4g26100
malus_domestica	MD13G1015800.v1.1 MD16G1013300.v1.1
prunus_persica	Prupe.1G337900_v2.0.a1 Prupe.1G337900_v2.0.a1
pyrus_communis	pycom16g01240
rosa_chinensis	RchiOBHm_Chr4g0433671
rosa_laevigata	RLG00000006740
rosa_multiflora	Rmu_sc0000312.1_g000022
rosa_roxburghii	Rroxscaffold_5G00375110
rosa_rugosa	Rorug04G0270000
rosa_samantha	Rh4AG325000 Rh4BG332700 Rh4CG348000 Rh4DG329400
rosa_wichuraiana	Rw4G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
Acc65I	GGTACC	1 cut(s)	1321
AccB1I	GGYRCC	1 cut(s)	1321
AccI	GTMKAC	1 cut(s)	1170
AciI	CCGC	2 cut(s)	101, 1227
AclWI	GGATC	3 cut(s)	152, 394, 841
AcsI	RAATTY	4 cut(s)	490, 894, 1028, 1299
AcuI	CTGAAG	3 cut(s)	89, 726, 977
AfaI	GTAC	3 cut(s)	256, 400, 1323
AfiI	CCNNNNNNNGG	1 cut(s)	1203
AflIII	ACRYGT	1 cut(s)	1165
AjnI	CCWGG	3 cut(s)	138, 849, 873
AluBI	AGCT	9 cut(s)	197, 371, 714, 740, 788, 970, 982, 1272, 1368
AluI	AGCT	9 cut(s)	197, 371, 714, 740, 788, 970, 982, 1272, 1368
Alw21I	GWGCWC	1 cut(s)	1117
Alw26I	GTCTC	3 cut(s)	459, 471, 1083
AlwI	GGATC	3 cut(s)	152, 394, 841
AlwNI	CAGNNNCTG	1 cut(s)	1061
Ama87I	CYCGRG	1 cut(s)	460
AoxI	GGCC	2 cut(s)	41, 1205
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	4 cut(s)	490, 894, 1028, 1299
AseI	ATTAAT	1 cut(s)	312
Asp700I	GAANNNNTTC	2 cut(s)	357, 422
Asp718I	GGTACC	1 cut(s)	1321
AspS9I	GGNCC	2 cut(s)	821, 853
AsuC2I	CCSGG	2 cut(s)	461, 462
AsuHPI	GGTGA	1 cut(s)	1112
AsuII	TTCGAA	2 cut(s)	595, 619
AvaI	CYCGRG	1 cut(s)	460
AvaII	GGWCC	2 cut(s)	821, 853
BanI	GGYRCC	1 cut(s)	1321
BauI	CACGAG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	757
Bbv12I	GWGCWC	1 cut(s)	1117
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	2 cut(s)	983, 1255
BciT130I	CCWGG	3 cut(s)	140, 851, 875
BciVI	GTATCC	1 cut(s)	1256
BclI	TGATCA	3 cut(s)	33, 217, 1315
BcnI	CCSGG	2 cut(s)	461, 462
BcoDI	GTCTC	3 cut(s)	459, 471, 1083
BfaI	CTAG	4 cut(s)	45, 737, 755, 816
BfuI	GTATCC	1 cut(s)	1256
BisI	GCNGC	1 cut(s)	511
BlsI	GCNGC	1 cut(s)	512
Bme1390I	CCNGG	5 cut(s)	140, 461, 462, 851, 875
Bme18I	GGWCC	2 cut(s)	821, 853
BmeT110I	CYCGRG	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	821, 853
BmiI	GGNNCC	1 cut(s)	1323
BmrFI	CCNGG	5 cut(s)	140, 461, 462, 851, 875
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	1 cut(s)	660
BmuI	ACTGGG	1 cut(s)	621
BpiI	GAAGAC	1 cut(s)	757
BplI	GAGNNNNNCTC	2 cut(s)	1099, 1131
Bpu14I	TTCGAA	2 cut(s)	595, 619
BpuMI	CCSGG	2 cut(s)	461, 462
BsaBI	GATNNNNATC	1 cut(s)	1341
BsaI	GGTCTC	1 cut(s)	1083
BsaJI	CCNNGG	5 cut(s)	120, 138, 460, 664, 874
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	1203
Bse1I	ACTGG	4 cut(s)	544, 627, 1156, 1208
Bse8I	GATNNNNATC	1 cut(s)	1341
BseBI	CCWGG	3 cut(s)	140, 851, 875
BseDI	CCNNGG	5 cut(s)	120, 138, 460, 664, 874
BseJI	GATNNNNATC	1 cut(s)	1341
BseLI	CCNNNNNNNGG	1 cut(s)	1203
BseMII	CTCAG	3 cut(s)	381, 784, 962
BseNI	ACTGG	4 cut(s)	544, 627, 1156, 1208
BseXI	GCAGC	1 cut(s)	522
Bsh1285I	CGRYCG	1 cut(s)	1339
BshFI	GGCC	2 cut(s)	43, 1207
BshNI	GGYRCC	1 cut(s)	1321
BsiEI	CGRYCG	1 cut(s)	1339
BsiHKAI	GWGCWC	1 cut(s)	1117
BsiHKCI	CYCGRG	1 cut(s)	460
BsiSI	CCGG	1 cut(s)	461
BslI	CCNNNNNNNGG	1 cut(s)	1203
BsmAI	GTCTC	3 cut(s)	459, 471, 1083
BsnI	GGCC	2 cut(s)	43, 1207
Bso31I	GGTCTC	1 cut(s)	1083
BsoBI	CYCGRG	1 cut(s)	460
Bsp119I	TTCGAA	2 cut(s)	595, 619
Bsp1286I	GDGCHC	1 cut(s)	1117
BspACI	CCGC	2 cut(s)	101, 1227
BspANI	GGCC	2 cut(s)	43, 1207
BspCNI	CTCAG	3 cut(s)	382, 783, 963
BspHI	TCATGA	2 cut(s)	214, 795
BspLI	GGNNCC	1 cut(s)	1323
BspPI	GGATC	3 cut(s)	152, 394, 841
BspQI	GCTCTTC	1 cut(s)	953
BspT104I	TTCGAA	2 cut(s)	595, 619
BspT107I	GGYRCC	1 cut(s)	1321
BspTNI	GGTCTC	1 cut(s)	1083
BsrI	ACTGG	4 cut(s)	544, 627, 1156, 1208
BssECI	CCNNGG	5 cut(s)	120, 138, 460, 664, 874
BssNAI	GTATAC	1 cut(s)	1171
BssSI	CACGAG	1 cut(s)	282
Bst1107I	GTATAC	1 cut(s)	1171
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	3 cut(s)	140, 851, 875
Bst4CI	ACNGT	3 cut(s)	171, 502, 586
Bst6I	CTCTTC	1 cut(s)	953
BstBI	TTCGAA	2 cut(s)	595, 619
BstC8I	GCNNGC	2 cut(s)	1010, 1113
BstDEI	CTNAG	3 cut(s)	390, 770, 971
BstMAI	GTCTC	3 cut(s)	459, 471, 1083
BstMCI	CGRYCG	1 cut(s)	1339
BstMWI	GCNNNNNNNGC	2 cut(s)	726, 835
BstNI	CCWGG	3 cut(s)	140, 851, 875
BstNSI	RCATGY	1 cut(s)	1169
BstSCI	CCNGG	5 cut(s)	138, 459, 460, 849, 873
BstV1I	GCAGC	1 cut(s)	522
BstV2I	GAAGAC	1 cut(s)	757
BstX2I	RGATCY	2 cut(s)	386, 846
BstYI	RGATCY	2 cut(s)	386, 846
BstZ17I	GTATAC	1 cut(s)	1171
BsuI	GTATCC	1 cut(s)	1256
BsuRI	GGCC	2 cut(s)	43, 1207
BtgZI	GCGATG	1 cut(s)	1233
BtsIMutI	CAGTG	5 cut(s)	498, 551, 634, 687, 1215
Cac8I	GCNNGC	2 cut(s)	1010, 1113
CaiI	CAGNNNCTG	1 cut(s)	1061
CciI	TCATGA	2 cut(s)	214, 795
Cfr13I	GGNCC	2 cut(s)	821, 853
Cfr9I	CCCGGG	1 cut(s)	460
Csp6I	GTAC	3 cut(s)	255, 399, 1322
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CviQI	GTAC	3 cut(s)	255, 399, 1322
DdeI	CTNAG	3 cut(s)	390, 770, 971
Eam1104I	CTCTTC	1 cut(s)	953
EarI	CTCTTC	1 cut(s)	953
Eco31I	GGTCTC	1 cut(s)	1083
Eco47I	GGWCC	2 cut(s)	821, 853
Eco57I	CTGAAG	3 cut(s)	89, 726, 977
Eco88I	CYCGRG	1 cut(s)	460
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRI	GAATTC	1 cut(s)	490
EcoRII	CCWGG	3 cut(s)	138, 849, 873
FalI	AAGNNNNNCTT	2 cut(s)	996, 1028
FbaI	TGATCA	3 cut(s)	33, 217, 1315
FblI	GTMKAC	1 cut(s)	1170
Fnu4HI	GCNGC	1 cut(s)	511
Fsp4HI	GCNGC	1 cut(s)	511
FspBI	CTAG	4 cut(s)	45, 737, 755, 816
GluI	GCNGC	1 cut(s)	511
HaeIII	GGCC	2 cut(s)	43, 1207
HapII	CCGG	1 cut(s)	461
HincII	GTYRAC	1 cut(s)	1352
HindII	GTYRAC	1 cut(s)	1352
HindIII	AAGCTT	3 cut(s)	369, 712, 1366
HinfI	GANTC	7 cut(s)	64, 125, 211, 527, 616, 1058, 1184
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	1 cut(s)	1112
Hpy166II	GTNNAC	2 cut(s)	1171, 1352
Hpy188III	TCNNGA	8 cut(s)	161, 215, 350, 524, 744, 796, 905, 1055
Hpy8I	GTNNAC	2 cut(s)	1171, 1352
Hpy99I	CGWCG	2 cut(s)	190, 1337
HpyAV	CCTTC	5 cut(s)	911, 940, 998, 1010, 1092
HpyCH4III	ACNGT	3 cut(s)	171, 502, 586
HpyCH4IV	ACGT	2 cut(s)	783, 1354
HpyCH4V	TGCA	7 cut(s)	8, 14, 408, 703, 936, 1091, 1121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	726, 835
HpyF3I	CTNAG	3 cut(s)	390, 770, 971
HpySE526I	ACGT	2 cut(s)	783, 1354
KpnI	GGTACC	1 cut(s)	1325
Ksp22I	TGATCA	3 cut(s)	33, 217, 1315
LguI	GCTCTTC	1 cut(s)	953
LmnI	GCTCC	3 cut(s)	202, 979, 1120
Lsp1109I	GCAGC	1 cut(s)	522
LweI	GCATC	1 cut(s)	660
MaeI	CTAG	4 cut(s)	45, 737, 755, 816
MaeII	ACGT	2 cut(s)	783, 1354
MaeIII	GTNAC	1 cut(s)	326
MboII	GAAGA	7 cut(s)	82, 214, 596, 609, 762, 862, 970
MflI	RGATCY	2 cut(s)	386, 846
MhlI	GDGCHC	1 cut(s)	1117
MluCI	AATT	7 cut(s)	235, 354, 490, 886, 894, 1028, 1299
MlyI	GAGTC	1 cut(s)	119
MroXI	GAANNNNTTC	2 cut(s)	357, 422
MseI	TTAA	4 cut(s)	179, 312, 366, 1378
MspA1I	CMGCKG	1 cut(s)	970
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	5 cut(s)	140, 461, 462, 851, 875
MvaI	CCWGG	3 cut(s)	140, 851, 875
MwoI	GCNNNNNNNGC	2 cut(s)	726, 835
NciI	CCSGG	2 cut(s)	461, 462
NlaIV	GGNNCC	1 cut(s)	1323
NmeAIII	GCCGAG	1 cut(s)	645
NmuCI	GTSAC	1 cut(s)	326
NspI	RCATGY	1 cut(s)	1169
NspV	TTCGAA	2 cut(s)	595, 619
PagI	TCATGA	2 cut(s)	214, 795
PciI	ACATGT	1 cut(s)	1165
PciSI	GCTCTTC	1 cut(s)	953
PcsI	WCGNNNNNNNCGW	1 cut(s)	1179
PdmI	GAANNNNTTC	2 cut(s)	357, 422
PfeI	GAWTC	6 cut(s)	64, 211, 527, 616, 1058, 1184
PfoI	TCCNGGA	1 cut(s)	849
PkrI	GCNGC	1 cut(s)	512
Ple19I	CGATCG	1 cut(s)	1339
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	821
PscI	ACATGT	1 cut(s)	1165
PshBI	ATTAAT	1 cut(s)	312
PsiI	TTATAA	1 cut(s)	554
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	3 cut(s)	138, 849, 873
PspGI	CCWGG	3 cut(s)	138, 849, 873
PspN4I	GGNNCC	1 cut(s)	1323
PspPI	GGNCC	2 cut(s)	821, 853
PspPPI	RGGWCCY	1 cut(s)	821
PstNI	CAGNNNCTG	1 cut(s)	1061
PsuI	RGATCY	2 cut(s)	386, 846
PvuI	CGATCG	1 cut(s)	1339
PvuII	CAGCTG	1 cut(s)	970
RsaI	GTAC	3 cut(s)	256, 400, 1323
RsaNI	GTAC	3 cut(s)	255, 399, 1322
SapI	GCTCTTC	1 cut(s)	953
SaqAI	TTAA	4 cut(s)	179, 312, 366, 1378
SatI	GCNGC	1 cut(s)	511
Sau96I	GGNCC	2 cut(s)	821, 853
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	5 cut(s)	140, 461, 462, 851, 875
SduI	GDGCHC	1 cut(s)	1117
SfaNI	GCATC	1 cut(s)	660
SfuI	TTCGAA	2 cut(s)	595, 619
SinI	GGWCC	2 cut(s)	821, 853
SmaI	CCCGGG	1 cut(s)	462
Sse9I	AATT	7 cut(s)	235, 354, 490, 886, 894, 1028, 1299
SsiI	CCGC	2 cut(s)	101, 1227
SspI	AATATT	2 cut(s)	1049, 1221
SspMI	CTAG	4 cut(s)	45, 737, 755, 816
StyD4I	CCNGG	5 cut(s)	138, 459, 460, 849, 873
TaaI	ACNGT	3 cut(s)	171, 502, 586
TaiI	ACGT	2 cut(s)	786, 1357
TaqI	TCGA	3 cut(s)	595, 619, 1187
TasI	AATT	7 cut(s)	235, 354, 490, 886, 894, 1028, 1299
TatI	WGTACW	1 cut(s)	254
TfiI	GAWTC	6 cut(s)	64, 211, 527, 616, 1058, 1184
Tru1I	TTAA	4 cut(s)	179, 312, 366, 1378
Tru9I	TTAA	4 cut(s)	179, 312, 366, 1378
TscAI	CASTG	5 cut(s)	505, 551, 634, 687, 1215
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	1 cut(s)	510
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	7 cut(s)	308, 415, 425, 467, 624, 720, 812
TspGWI	ACGGA	1 cut(s)	317
TspMI	CCCGGG	1 cut(s)	460
TspRI	CASTG	5 cut(s)	505, 551, 634, 687, 1215
VpaK11BI	GGWCC	2 cut(s)	821, 853
VspI	ATTAAT	1 cut(s)	312
XapI	RAATTY	4 cut(s)	490, 894, 1028, 1299
XceI	RCATGY	1 cut(s)	1169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmaI	CCCGGG	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	1170
XmnI	GAANNNNTTC	2 cut(s)	357, 422
XspI	CTAG	4 cut(s)	45, 737, 755, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.