Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012032

Physical Location & Seq

Genomic Coordinates Forward (+)

55997016 .. 55999456

Gene Structure 2441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGTGGCCTAGATTAGTGGCGAACAAAATTCTGAAGAAGCGATTGGGAAGCAATAACTTTGTAGCAGATTTCCCAAGCAACTCGGAGGACTCCGCCTTGCAGCTGGAAACACCAAGTTTTGATCCAGAGAGACCGCTATCTTTATGCCCGACGACACCAGCTCCAAAAATCTTGAATCACCACAAGCACACGCACAATTACAAGGTTTTTGTCAGTACATGGAATGTTGGTGGAGTTGAACCACGAGATGATATGAACATGGCGGATTGGATTACTGACACATCCTGTGACATCTATGTTTTTGGGTTTCAAGAAATTGTTCCTCTCAAAGCCTCAAATGTTCTGGGATCTGAGAATAGTATGATCTGCATGAAGTGGAATTCCTTCATTAGAGAAACTTTGAACAAGAAAATAAACCACCCGGGAGACAAGAATAAGGAAAAAAATGGAAAGTCAACCATTGTGGAAAGCAGCACCAGTCCAGAATCACAGGATTACTTCCAGTGTATTATAAGTAAGCAAATGGTGGGAATACTAATAACAGTCTGGGTTCGAAGAAATCTTCGTCCTTTGATTCGGAATCCGAGTGTTTCATGTGTTGGCTGTGGCATCATGGGTTGCCTCGGCAATAAGGGTTCGGTGTCAGTTAGGTTTCAACTGCATGAAACAAGCTTCTGCTTCGTGTGCTGTCATCTAGCTTCAGGGGGAAGACAAGGAGATGAGAAACTCAGAAACTCGAACGTAGCTGAAATCTTGAACAGAACAAGTTTCCCTAGAGGTCCATTGCTTGATTTGCCACGAAAGATCCTAGACCACCAACGAGTAATCTTCTTGGGAGATTTGAATTACAGAATTTCCCTTCCAGAAGCAACCACACGGTCATTAGTGGATAGCAGAGATTGGAATGCCTTACTGAACAGCGATCAGCTGAGTATGGAGCTCAATGATGGTCAAGTATTTGAAGGTTGGCTTGAAGGAAGTATCAAATTTGCTCCGACTTACAAATATTTTCCAGATTCTGATACATATTATGGATCTCCTCCTCCTGCAAGGAATGGTGAAAAGAGGCGTGCTCCTGCATGGTGTGATCGGATAATTTGGTATGGAAAAGGGTTGAAGCAACATGTATACGACCGAGGTGAATCAAAATTGTCTGACCACAGGCCAGTGAAGTCAATATTTACTGCCCAAGTTGAAGTTCTACCATCGCTTATGAGAGGATACCAAAGCTTTTTTCTTTCAGACAGGTTTGACAAAATTTCAAGCCAGTTTGAGGTACCCTCCACCGACGATCGATTTCTATGTCAACGCAGATCATCAAGCTTCAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019637 GO:0030100 GO:0030258 GO:0031323 GO:0032879 GO:0033554 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048259 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051716 GO:0052866 GO:0060627 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0104004 GO:0106019 GO:2000369 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

444

Amino Acids

50.44

Weight (kDa)

8.89

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	73 - 392	4.4e-69	Endonuclease/Exonuclease/phosphatase family 2
Exo_endo_phos	PF03372	73 - 387	4.1e-06	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01900 AT2G01900 AT2G01900
fragaria_vesca	FvH4_4g26100
malus_domestica	MD13G1015800.v1.1 MD16G1013300.v1.1
prunus_persica	Prupe.1G337900_v2.0.a1 Prupe.1G337900_v2.0.a1
pyrus_communis	pycom16g01240
rosa_chinensis	RchiOBHm_Chr4g0433671
rosa_laevigata	RLG00000006740
rosa_multiflora	Rmu_sc0000312.1_g000022
rosa_roxburghii	Rroxscaffold_5G00375110
rosa_rugosa	Rorug04G0270000
rosa_samantha	Rh4AG325000 Rh4BG332700 Rh4CG348000 Rh4DG329400
rosa_wichuraiana	Rw4G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	512
Acc65I	GGTACC	1 cut(s)	1276
AccB1I	GGYRCC	1 cut(s)	1276
AccI	GTMKAC	1 cut(s)	1128
AciI	CCGC	3 cut(s)	93, 134, 263
AclWI	GGATC	4 cut(s)	116, 355, 799, 1042
AcsI	RAATTY	5 cut(s)	27, 379, 852, 986, 1257
AcuI	CTGAAG	2 cut(s)	53, 684
AfaI	GTAC	2 cut(s)	217, 1278
AfiI	CCNNNNNNNGG	1 cut(s)	1273
AflIII	ACRYGT	1 cut(s)	1123
AjuI	GAANNNNNNNTTGG	6 cut(s)	26, 58, 1182, 1214, 1218, 1250
Alw21I	GWGCWC	2 cut(s)	942, 1075
Alw26I	GTCTC	2 cut(s)	124, 420
AlwI	GGATC	4 cut(s)	116, 355, 799, 1042
AlwNI	CAGNNNCTG	1 cut(s)	1019
Ama87I	CYCGRG	1 cut(s)	421
AoxI	GGCC	2 cut(s)	5, 1163
ApeKI	GCWGC	2 cut(s)	100, 471
ApoI	RAATTY	5 cut(s)	27, 379, 852, 986, 1257
Asp700I	GAANNNNTTC	2 cut(s)	318, 383
Asp718I	GGTACC	1 cut(s)	1276
AspS9I	GGNCC	1 cut(s)	779
AsuC2I	CCSGG	2 cut(s)	422, 423
AsuHPI	GGTGA	3 cut(s)	170, 1070, 1151
AsuII	TTCGAA	1 cut(s)	553
AvaI	CYCGRG	1 cut(s)	421
AvaII	GGWCC	1 cut(s)	779
BanI	GGYRCC	1 cut(s)	1276
BanII	GRGCYC	1 cut(s)	942
BauI	CACGAG	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	715
Bbv12I	GWGCWC	2 cut(s)	942, 1075
BbvI	GCAGC	2 cut(s)	112, 483
BccI	CCATC	2 cut(s)	941, 1213
BciVI	GTATCC	1 cut(s)	1214
BcnI	CCSGG	2 cut(s)	422, 423
BcoDI	GTCTC	2 cut(s)	124, 420
BfaI	CTAG	4 cut(s)	9, 695, 774, 809
BfuI	GTATCC	1 cut(s)	1214
BisI	GCNGC	2 cut(s)	101, 472
BlsI	GCNGC	2 cut(s)	102, 473
Bme1390I	CCNGG	2 cut(s)	422, 423
Bme18I	GGWCC	1 cut(s)	779
BmeT110I	CYCGRG	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	779
BmiI	GGNNCC	1 cut(s)	1278
BmrFI	CCNGG	2 cut(s)	422, 423
BmsI	GCATC	1 cut(s)	618
BpiI	GAAGAC	1 cut(s)	715
BplI	GAGNNNNNCTC	4 cut(s)	1057, 1089, 1265, 1297
Bpu14I	TTCGAA	1 cut(s)	553
BpuMI	CCSGG	2 cut(s)	422, 423
Bsa29I	ATCGAT	1 cut(s)	1294
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	3 cut(s)	421, 622, 1135
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	1273
Bse1I	ACTGG	4 cut(s)	477, 502, 1166, 1267
Bse3DI	GCAATG	1 cut(s)	782
BseCI	ATCGAT	1 cut(s)	1294
BseDI	CCNNGG	3 cut(s)	421, 622, 1135
BseGI	GGATG	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	1273
BseMI	GCAATG	1 cut(s)	782
BseMII	CTCAG	3 cut(s)	342, 742, 920
BseNI	ACTGG	4 cut(s)	477, 502, 1166, 1267
BseRI	GAGGAG	2 cut(s)	1029, 1032
BseXI	GCAGC	2 cut(s)	112, 483
Bsh1285I	CGRYCG	2 cut(s)	1135, 1294
BshFI	GGCC	2 cut(s)	7, 1165
BshNI	GGYRCC	1 cut(s)	1276
BshVI	ATCGAT	1 cut(s)	1294
BsiEI	CGRYCG	2 cut(s)	1135, 1294
BsiHKAI	GWGCWC	2 cut(s)	942, 1075
BsiHKCI	CYCGRG	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	1273
BsmAI	GTCTC	2 cut(s)	124, 420
BsmI	GAATGC	1 cut(s)	910
BsnI	GGCC	2 cut(s)	7, 1165
Bso31I	GGTCTC	1 cut(s)	124
BsoBI	CYCGRG	1 cut(s)	421
Bsp119I	TTCGAA	1 cut(s)	553
Bsp1286I	GDGCHC	2 cut(s)	942, 1075
Bsp143I	GATC	9 cut(s)	121, 347, 363, 804, 922, 1034, 1087, 1291, 1313
BspACI	CCGC	3 cut(s)	93, 134, 263
BspANI	GGCC	2 cut(s)	7, 1165
BspCNI	CTCAG	3 cut(s)	343, 741, 921
BspDI	ATCGAT	1 cut(s)	1294
BspLI	GGNNCC	1 cut(s)	1278
BspPI	GGATC	4 cut(s)	116, 355, 799, 1042
BspT104I	TTCGAA	1 cut(s)	553
BspT107I	GGYRCC	1 cut(s)	1276
BspTNI	GGTCTC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	782
BsrI	ACTGG	4 cut(s)	477, 502, 1166, 1267
BssECI	CCNNGG	3 cut(s)	421, 622, 1135
BssMI	GATC	9 cut(s)	121, 347, 363, 804, 922, 1034, 1087, 1291, 1313
BssNAI	GTATAC	1 cut(s)	1129
BssSI	CACGAG	1 cut(s)	243
Bst1107I	GTATAC	1 cut(s)	1129
Bst2BI	CACGAG	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	544, 879
BstBI	TTCGAA	1 cut(s)	553
BstC8I	GCNNGC	1 cut(s)	1071
BstDEI	CTNAG	3 cut(s)	351, 728, 929
BstF5I	GGATG	1 cut(s)	281
BstKTI	GATC	9 cut(s)	124, 350, 366, 807, 925, 1037, 1090, 1294, 1316
BstMAI	GTCTC	2 cut(s)	124, 420
BstMBI	GATC	9 cut(s)	121, 347, 363, 804, 922, 1034, 1087, 1291, 1313
BstMCI	CGRYCG	2 cut(s)	1135, 1294
BstMWI	GCNNNNNNNGC	2 cut(s)	684, 793
BstNSI	RCATGY	1 cut(s)	1127
BstSCI	CCNGG	2 cut(s)	420, 421
BstV1I	GCAGC	2 cut(s)	112, 483
BstV2I	GAAGAC	1 cut(s)	715
BstX2I	RGATCY	3 cut(s)	347, 804, 1034
BstYI	RGATCY	3 cut(s)	347, 804, 1034
BstZ17I	GTATAC	1 cut(s)	1129
Bsu15I	ATCGAT	1 cut(s)	1294
BsuI	GTATCC	1 cut(s)	1214
BsuRI	GGCC	2 cut(s)	7, 1165
BsuTUI	ATCGAT	1 cut(s)	1294
BtgZI	GCGATG	1 cut(s)	1191
BtsCI	GGATG	1 cut(s)	281
BtsIMutI	CAGTG	2 cut(s)	509, 1173
Cac8I	GCNNGC	1 cut(s)	1071
CaiI	CAGNNNCTG	1 cut(s)	1019
Cfr13I	GGNCC	1 cut(s)	779
Cfr9I	CCCGGG	1 cut(s)	421
ClaI	ATCGAT	1 cut(s)	1294
Csp6I	GTAC	2 cut(s)	216, 1277
CspCI	CAANNNNNGTGG	2 cut(s)	444, 479
CviAII	CATG	8 cut(s)	219, 259, 370, 594, 613, 662, 1080, 1124
CviQI	GTAC	2 cut(s)	216, 1277
DdeI	CTNAG	3 cut(s)	351, 728, 929
DpnI	GATC	9 cut(s)	123, 349, 365, 806, 924, 1036, 1089, 1293, 1315
DpnII	GATC	9 cut(s)	121, 347, 363, 804, 922, 1034, 1087, 1291, 1313
EciI	GGCGGA	2 cut(s)	82, 278
Ecl136II	GAGCTC	1 cut(s)	940
Eco24I	GRGCYC	1 cut(s)	942
Eco31I	GGTCTC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	779
Eco53kI	GAGCTC	1 cut(s)	940
Eco57I	CTGAAG	2 cut(s)	53, 684
Eco88I	CYCGRG	1 cut(s)	421
EcoICRI	GAGCTC	1 cut(s)	940
EcoRI	GAATTC	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	942
FaeI	CATG	8 cut(s)	222, 262, 373, 597, 616, 665, 1083, 1127
FalI	AAGNNNNNCTT	2 cut(s)	954, 986
FatI	CATG	8 cut(s)	218, 258, 369, 593, 612, 661, 1079, 1123
FblI	GTMKAC	1 cut(s)	1128
Fnu4HI	GCNGC	2 cut(s)	101, 472
FokI	GGATG	1 cut(s)	268
FriOI	GRGCYC	1 cut(s)	942
Fsp4HI	GCNGC	2 cut(s)	101, 472
FspBI	CTAG	4 cut(s)	9, 695, 774, 809
GluI	GCNGC	2 cut(s)	101, 472
HaeIII	GGCC	2 cut(s)	7, 1165
HapII	CCGG	1 cut(s)	422
Hin1II	CATG	8 cut(s)	222, 262, 373, 597, 616, 665, 1083, 1127
HincII	GTYRAC	2 cut(s)	456, 1307
HindII	GTYRAC	2 cut(s)	456, 1307
HindIII	AAGCTT	4 cut(s)	670, 1228, 1321, 1329
HinfI	GANTC	7 cut(s)	89, 175, 485, 574, 580, 1016, 1142
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	3 cut(s)	170, 1070, 1151
Hpy166II	GTNNAC	3 cut(s)	456, 1129, 1307
Hpy188III	TCNNGA	7 cut(s)	125, 172, 311, 482, 754, 863, 1013
Hpy8I	GTNNAC	3 cut(s)	456, 1129, 1307
Hpy99I	CGWCG	2 cut(s)	154, 1292
HpyAV	CCTTC	4 cut(s)	394, 869, 956, 968
HpyCH4III	ACNGT	2 cut(s)	544, 879
HpyCH4IV	ACGT	1 cut(s)	741
HpyCH4V	TGCA	5 cut(s)	100, 369, 661, 1049, 1079
HpyF10VI	GCNNNNNNNGC	2 cut(s)	684, 793
HpyF3I	CTNAG	3 cut(s)	351, 728, 929
HpySE526I	ACGT	1 cut(s)	741
Hsp92II	CATG	8 cut(s)	222, 262, 373, 597, 616, 665, 1083, 1127
KpnI	GGTACC	1 cut(s)	1280
Kzo9I	GATC	9 cut(s)	121, 347, 363, 804, 922, 1034, 1087, 1291, 1313
LmnI	GCTCC	4 cut(s)	166, 937, 997, 1078
Lsp1109I	GCAGC	2 cut(s)	112, 483
LweI	GCATC	1 cut(s)	618
MaeI	CTAG	4 cut(s)	9, 695, 774, 809
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	9 cut(s)	123, 349, 365, 806, 924, 1036, 1089, 1293, 1315
MboI	GATC	9 cut(s)	121, 347, 363, 804, 922, 1034, 1087, 1291, 1313
MboII	GAAGA	5 cut(s)	46, 554, 567, 720, 820
MflI	RGATCY	3 cut(s)	347, 804, 1034
MhlI	GDGCHC	2 cut(s)	942, 1075
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	1019
MroXI	GAANNNNTTC	2 cut(s)	318, 383
MspA1I	CMGCKG	2 cut(s)	103, 928
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	2 cut(s)	422, 423
Mva1269I	GAATGC	1 cut(s)	910
MwoI	GCNNNNNNNGC	2 cut(s)	684, 793
NciI	CCSGG	2 cut(s)	422, 423
NdeII	GATC	9 cut(s)	121, 347, 363, 804, 922, 1034, 1087, 1291, 1313
NlaIII	CATG	8 cut(s)	222, 262, 373, 597, 616, 665, 1083, 1127
NlaIV	GGNNCC	1 cut(s)	1278
NmeAIII	GCCGAG	1 cut(s)	603
NmuCI	GTSAC	1 cut(s)	287
NspI	RCATGY	1 cut(s)	1127
NspV	TTCGAA	1 cut(s)	553
PciI	ACATGT	1 cut(s)	1123
PctI	GAATGC	1 cut(s)	910
PdmI	GAANNNNTTC	2 cut(s)	318, 383
PfeI	GAWTC	6 cut(s)	175, 485, 574, 580, 1016, 1142
PkrI	GCNGC	2 cut(s)	102, 473
Ple19I	CGATCG	1 cut(s)	1294
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PscI	ACATGT	1 cut(s)	1123
PsiI	TTATAA	1 cut(s)	512
Psp124BI	GAGCTC	1 cut(s)	942
PspN4I	GGNNCC	1 cut(s)	1278
PspPI	GGNCC	1 cut(s)	779
PstNI	CAGNNNCTG	1 cut(s)	1019
PsuI	RGATCY	3 cut(s)	347, 804, 1034
PvuI	CGATCG	1 cut(s)	1294
PvuII	CAGCTG	2 cut(s)	103, 928
RsaI	GTAC	2 cut(s)	217, 1278
RsaNI	GTAC	2 cut(s)	216, 1277
SacI	GAGCTC	1 cut(s)	942
SatI	GCNGC	2 cut(s)	101, 472
Sau3AI	GATC	9 cut(s)	121, 347, 363, 804, 922, 1034, 1087, 1291, 1313
Sau96I	GGNCC	1 cut(s)	779
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	422, 423
SduI	GDGCHC	2 cut(s)	942, 1075
SfaNI	GCATC	1 cut(s)	618
SfuI	TTCGAA	1 cut(s)	553
SinI	GGWCC	1 cut(s)	779
SmaI	CCCGGG	1 cut(s)	423
SsiI	CCGC	3 cut(s)	93, 134, 263
SspI	AATATT	2 cut(s)	1007, 1179
SspMI	CTAG	4 cut(s)	9, 695, 774, 809
SstI	GAGCTC	1 cut(s)	942
StyD4I	CCNGG	2 cut(s)	420, 421
TaaI	ACNGT	2 cut(s)	544, 879
TaiI	ACGT	1 cut(s)	744
TaqI	TCGA	3 cut(s)	553, 737, 1294
TaqII	GACCGA	1 cut(s)	1149
TatI	WGTACW	1 cut(s)	215
TfiI	GAWTC	6 cut(s)	175, 485, 574, 580, 1016, 1142
TscAI	CASTG	2 cut(s)	509, 1173
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	2 cut(s)	100, 471
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	5 cut(s)	269, 376, 386, 582, 678
TspMI	CCCGGG	1 cut(s)	421
TspRI	CASTG	2 cut(s)	509, 1173
VpaK11BI	GGWCC	1 cut(s)	779
XapI	RAATTY	5 cut(s)	27, 379, 852, 986, 1257
XceI	RCATGY	1 cut(s)	1127
XmaI	CCCGGG	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	1128
XmnI	GAANNNNTTC	2 cut(s)	318, 383
XspI	CTAG	4 cut(s)	9, 695, 774, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.