MD13G1015800.v1.1

Type I inositol 1,4,5-trisphosphate 5-phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012032
Physical Location & Seq
Reverse (-)
1005283 .. 1008602
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1015800.v1.1.491

Sequence Viewer

Length: 1278 bp
ATGGCTAGAAAGCCAGGAGAAGTGATGTGGCCTAGATTAGTGGCAAACAAGATTCTGAGAAAGCAATTGGGAAGCAACAACTTTGTAGCAGATTTTCCAAGCAACGAGGTCTCGGAGGAATTAATACTGGAAACACCAAGTGTTGATCAACCGTCTTCAAACCTTACCTCTACCGTCGTCAATCATCACAAGGACACTAACACACACAAGTACAAGGTTTTTGTTAGTACATGGAATGTTGGCGGGGTGGAACCACAAGAAGATATGAATATGGAGGATTGGATTGACACATCCTCTGACATCTATGTTCTTGGGTTTCAAGAAATCGTTCCTCTGAAAGCCTCCAATGTTCTAGGATCTGAGAATAGTAAGATCTGCATGAAATGGAATTCCTTGATCAGAGAAGCTTTAAACAAGAAAAGACACAACAATATTAATAAACCACCAGACTTCCACTGTATTGTAAGTAAGCAAATGGTGGGGATACTAATATCAGTTTGGATTCGAAGTGATCTTCGTCCATTTATTCGGAATCCAAGTGTCTCCTGTGTTGGCTGTGGGATCATGGGATGCCTAGGAAATAAGGGTTCGGTTTCTGTTAGATTTCGATTACATGAAACAAGCTTCTGCTTCGTGTGCACTCATCTAGCTTCAGGGGGTAGAGAAGGAGATGAGAAACTGAGGAATTCTAACATATCCGATATATTTTCCAGAACAAGTTTTCCCAGAGGCCCTTTGCTTGATTTGCCACGAAGGATCTTAGATCATGATCGAGTAATTTTCCTCGGAGACTTGAATTATAGAATTTCCCTTCCGGAAGCAACAACGCGTTCGTTAGTGGATATAAGAGCATGGAATATCTTACTAAAACATGATCAGCTGATGATGCAGCTCAAAGAGGGACAAGTACTCGAAGGTTGGAATGAAGGAGCTGTTGAATTTGCTCCCACTTACAAATATTGTCCAAATTCTGATGTATATTATGGATGTCCTCCGGGAAAGAAAGGTGAAAAGAGGCGTGCTCCTGCCTGGTGTGATCGGATAATTTGGCGTGGAGAAGGGTTGAAGCAACATGTATACAATAGAGGTGAATCAAAATTGTCTGATCACAGACCTGTGAATGCAATATTTACAGCCGAAGTTGGGGTTTTAAGAACATTGAGAGGATATCATAGTTTTTTTGTATCAGACAGGTTAGACGGAGTATCAAGCAAGTTTCAAGTATCCTCCACCCATAATTTTGTATGGAAAGGGAGATCAACAAGCTGGAAACTTTGA

Protein Analysis

426

Amino Acids

48.27

Weight (kDa)

9.14

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 77 - 375 3.5e-70 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01900 AT2G01900 AT2G01900
fragaria_vesca FvH4_4g26100
malus_domestica MD13G1015800.v1.1 MD16G1013300.v1.1
prunus_persica Prupe.1G337900_v2.0.a1 Prupe.1G337900_v2.0.a1
pyrus_communis pycom16g01240
rosa_chinensis RchiOBHm_Chr4g0433671
rosa_laevigata RLG00000006740
rosa_multiflora Rmu_sc0000312.1_g000022
rosa_roxburghii Rroxscaffold_5G00375110
rosa_rugosa Rorug04G0270000
rosa_samantha Rh4AG325000 Rh4BG332700 Rh4CG348000 Rh4DG329400
rosa_wichuraiana Rw4G028140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1077
AccII CGCG 1 cut(s) 829
AccIII TCCGGA 1 cut(s) 814
AciI CCGC 1 cut(s) 243
AclWI GGATC 3 cut(s) 364, 569, 764
AcsI RAATTY 5 cut(s) 388, 685, 804, 938, 967
AcuI CTGAAG 1 cut(s) 636
AdeI CACNNNGTG 1 cut(s) 140
AfaI GTAC 3 cut(s) 212, 229, 909
AfiI CCNNNNNNNGG 1 cut(s) 1143
AflIII ACRYGT 2 cut(s) 827, 1072
AgsI TTSAA 6 cut(s) 159, 320, 796, 938, 1066, 1220
AjnI CCWGG 2 cut(s) 13, 1028
AloI GAACNNNNNNTCC 2 cut(s) 706, 738
AluBI AGCT 7 cut(s) 407, 624, 650, 880, 892, 932, 1266
AluI AGCT 7 cut(s) 407, 624, 650, 880, 892, 932, 1266
Alw21I GWGCWC 2 cut(s) 641, 1024
Alw26I GTCTC 3 cut(s) 115, 547, 783
Alw44I GTGCAC 1 cut(s) 637
AlwI GGATC 3 cut(s) 364, 569, 764
Aor13HI TCCGGA 1 cut(s) 814
AoxI GGCC 2 cut(s) 29, 730
ApaLI GTGCAC 1 cut(s) 637
ApeKI GCWGC 1 cut(s) 889
ApoI RAATTY 5 cut(s) 388, 685, 804, 938, 967
AseI ATTAAT 2 cut(s) 122, 435
Asp700I GAANNNNTTC 1 cut(s) 327
AspA2I CCTAGG 1 cut(s) 574
AspS9I GGNCC 1 cut(s) 731
AsuC2I CCSGG 1 cut(s) 996
AsuHPI GGTGA 2 cut(s) 1019, 1100
AsuII TTCGAA 1 cut(s) 505
AvrII CCTAGG 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 641
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 2 cut(s) 641, 1024
BbvI GCAGC 1 cut(s) 901
BciT130I CCWGG 2 cut(s) 15, 1030
BciVI GTATCC 2 cut(s) 477, 1234
BclI TGATCA 4 cut(s) 145, 396, 874, 1105
BcnI CCSGG 1 cut(s) 996
BcoDI GTCTC 3 cut(s) 115, 547, 783
BfaI CTAG 5 cut(s) 6, 33, 353, 575, 647
BfuI GTATCC 2 cut(s) 477, 1234
BglII AGATCT 1 cut(s) 372
BisI GCNGC 1 cut(s) 890
BlnI CCTAGG 1 cut(s) 574
BlsI GCNGC 1 cut(s) 891
BmcAI AGTACT 1 cut(s) 909
Bme1390I CCNGG 3 cut(s) 15, 996, 1030
BmgT120I GGNCC 1 cut(s) 731
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 3 cut(s) 15, 996, 1030
BmsI GCATC 2 cut(s) 560, 876
BpiI GAAGAC 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 1006, 1038
Bpu14I TTCGAA 1 cut(s) 505
BpuMI CCSGG 1 cut(s) 996
BsaBI GATNNNNATC 1 cut(s) 768
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 574, 784
BsaWI WCCGGW 1 cut(s) 814
Bsc4I CCNNNNNNNGG 1 cut(s) 1143
Bse1I ACTGG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 768
BseAI TCCGGA 1 cut(s) 814
BseBI CCWGG 2 cut(s) 15, 1030
BseDI CCNNGG 2 cut(s) 574, 784
BseGI GGATG 3 cut(s) 290, 575, 992
BseJI GATNNNNATC 1 cut(s) 768
BseLI CCNNNNNNNGG 1 cut(s) 1143
BseMII CTCAG 3 cut(s) 47, 351, 671
BseNI ACTGG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 641
BseXI GCAGC 1 cut(s) 901
Bsh1236I CGCG 1 cut(s) 829
BshFI GGCC 2 cut(s) 31, 732
BsiHKAI GWGCWC 2 cut(s) 641, 1024
BsiSI CCGG 2 cut(s) 815, 995
BslFI GGGAC 1 cut(s) 915
BslI CCNNNNNNNGG 1 cut(s) 1143
BsmAI GTCTC 3 cut(s) 115, 547, 783
BsmFI GGGAC 1 cut(s) 915
BsmI GAATGC 1 cut(s) 1126
BsnI GGCC 2 cut(s) 31, 732
Bso31I GGTCTC 1 cut(s) 115
Bsp119I TTCGAA 1 cut(s) 505
Bsp1286I GDGCHC 2 cut(s) 641, 1024
Bsp13I TCCGGA 1 cut(s) 814
BspACI CCGC 1 cut(s) 243
BspANI GGCC 2 cut(s) 31, 732
BspCNI CTCAG 3 cut(s) 48, 352, 672
BspEI TCCGGA 1 cut(s) 814
BspFNI CGCG 1 cut(s) 829
BspHI TCATGA 1 cut(s) 766
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 3 cut(s) 364, 569, 764
BspT104I TTCGAA 1 cut(s) 505
BspTNI GGTCTC 1 cut(s) 115
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 2 cut(s) 574, 784
BssNAI GTATAC 1 cut(s) 1078
BssT1I CCWWGG 1 cut(s) 574
Bst1107I GTATAC 1 cut(s) 1078
Bst2UI CCWGG 2 cut(s) 15, 1030
Bst4CI ACNGT 3 cut(s) 153, 175, 458
BstBI TTCGAA 1 cut(s) 505
BstC8I GCNNGC 1 cut(s) 1020
BstDEI CTNAG 4 cut(s) 56, 360, 680, 760
BstF5I GGATG 3 cut(s) 290, 575, 992
BstFNI CGCG 1 cut(s) 829
BstMAI GTCTC 3 cut(s) 115, 547, 783
BstMWI GCNNNNNNNGC 3 cut(s) 636, 745, 886
BstNI CCWGG 2 cut(s) 15, 1030
BstNSI RCATGY 1 cut(s) 1076
BstSCI CCNGG 3 cut(s) 13, 994, 1028
BstSLI GKGCMC 1 cut(s) 641
BstUI CGCG 1 cut(s) 829
BstV1I GCAGC 1 cut(s) 901
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 3 cut(s) 356, 372, 756
BstYI RGATCY 3 cut(s) 356, 372, 756
BstZ17I GTATAC 1 cut(s) 1078
BsuI GTATCC 2 cut(s) 477, 1234
BsuRI GGCC 2 cut(s) 31, 732
BtsCI GGATG 3 cut(s) 290, 575, 992
BtsIMutI CAGTG 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 1020
CciI TCATGA 1 cut(s) 766
Cfr13I GGNCC 1 cut(s) 731
Csp6I GTAC 3 cut(s) 211, 228, 908
CviAII CATG 8 cut(s) 231, 379, 565, 614, 767, 852, 872, 1073
CviQI GTAC 3 cut(s) 211, 228, 908
DdeI CTNAG 4 cut(s) 56, 360, 680, 760
DraI TTTAAA 1 cut(s) 411
DraIII CACNNNGTG 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 574
Eco31I GGTCTC 1 cut(s) 115
Eco32I GATATC 1 cut(s) 1169
Eco57I CTGAAG 1 cut(s) 636
EcoO109I RGGNCCY 1 cut(s) 731
EcoRI GAATTC 2 cut(s) 388, 685
EcoRII CCWGG 2 cut(s) 13, 1028
EcoRV GATATC 1 cut(s) 1169
EcoT14I CCWWGG 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 574
FaeI CATG 8 cut(s) 234, 382, 568, 617, 770, 855, 875, 1076
FaqI GGGAC 1 cut(s) 915
FatI CATG 8 cut(s) 230, 378, 564, 613, 766, 851, 871, 1072
FauI CCCGC 1 cut(s) 236
FbaI TGATCA 4 cut(s) 145, 396, 874, 1105
FblI GTMKAC 1 cut(s) 1077
Fnu4HI GCNGC 1 cut(s) 890
FokI GGATG 3 cut(s) 277, 582, 999
Fsp4HI GCNGC 1 cut(s) 890
FspBI CTAG 5 cut(s) 6, 33, 353, 575, 647
GluI GCNGC 1 cut(s) 890
HaeIII GGCC 2 cut(s) 31, 732
HapII CCGG 2 cut(s) 815, 995
Hin1II CATG 8 cut(s) 234, 382, 568, 617, 770, 855, 875, 1076
HindIII AAGCTT 2 cut(s) 405, 622
HinfI GANTC 4 cut(s) 52, 502, 532, 1091
HpaII CCGG 2 cut(s) 815, 995
HphI GGTGA 2 cut(s) 1019, 1100
Hpy166II GTNNAC 2 cut(s) 639, 1078
Hpy188III TCNNGA 4 cut(s) 320, 711, 767, 815
Hpy8I GTNNAC 2 cut(s) 639, 1078
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 6 cut(s) 659, 747, 821, 908, 920, 1052
HpyCH4III ACNGT 3 cut(s) 153, 175, 458
HpyCH4V TGCA 4 cut(s) 378, 639, 889, 1124
HpyF10VI GCNNNNNNNGC 3 cut(s) 636, 745, 886
HpyF3I CTNAG 4 cut(s) 56, 360, 680, 760
Hsp92II CATG 8 cut(s) 234, 382, 568, 617, 770, 855, 875, 1076
Kpn2I TCCGGA 1 cut(s) 814
Ksp22I TGATCA 4 cut(s) 145, 396, 874, 1105
LmnI GCTCC 3 cut(s) 929, 949, 1027
Lsp1109I GCAGC 1 cut(s) 901
LweI GCATC 2 cut(s) 560, 876
MaeI CTAG 5 cut(s) 6, 33, 353, 575, 647
MboII GAAGA 3 cut(s) 147, 272, 506
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 3 cut(s) 356, 372, 756
MhlI GDGCHC 2 cut(s) 641, 1024
MluI ACGCGT 1 cut(s) 827
MmeI TCCRAC 1 cut(s) 899
MroI TCCGGA 1 cut(s) 814
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 4 cut(s) 122, 410, 435, 1151
MspA1I CMGCKG 1 cut(s) 880
MspI CCGG 2 cut(s) 815, 995
MspR9I CCNGG 3 cut(s) 15, 996, 1030
MunI CAATTG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 1126
MvaI CCWGG 2 cut(s) 15, 1030
MvnI CGCG 1 cut(s) 829
MwoI GCNNNNNNNGC 3 cut(s) 636, 745, 886
NciI CCSGG 1 cut(s) 996
NlaIII CATG 8 cut(s) 234, 382, 568, 617, 770, 855, 875, 1076
NlaIV GGNNCC 1 cut(s) 252
NspI RCATGY 1 cut(s) 1076
NspV TTCGAA 1 cut(s) 505
PagI TCATGA 1 cut(s) 766
PciI ACATGT 1 cut(s) 1072
PctI GAATGC 1 cut(s) 1126
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 4 cut(s) 52, 502, 532, 1091
PfoI TCCNGGA 1 cut(s) 994
PkrI GCNGC 1 cut(s) 891
PscI ACATGT 1 cut(s) 1072
PshBI ATTAAT 2 cut(s) 122, 435
Psp6I CCWGG 2 cut(s) 13, 1028
PspGI CCWGG 2 cut(s) 13, 1028
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 731
PsuI RGATCY 3 cut(s) 356, 372, 756
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 3 cut(s) 212, 229, 909
RsaNI GTAC 3 cut(s) 211, 228, 908
SaqAI TTAA 4 cut(s) 122, 410, 435, 1151
SatI GCNGC 1 cut(s) 890
Sau96I GGNCC 1 cut(s) 731
ScaI AGTACT 1 cut(s) 909
ScrFI CCNGG 3 cut(s) 15, 996, 1030
SduI GDGCHC 2 cut(s) 641, 1024
SfaNI GCATC 2 cut(s) 560, 876
SfuI TTCGAA 1 cut(s) 505
SsiI CCGC 1 cut(s) 243
SspI AATATT 3 cut(s) 433, 959, 1128
SspMI CTAG 5 cut(s) 6, 33, 353, 575, 647
StyD4I CCNGG 3 cut(s) 13, 994, 1028
StyI CCWWGG 1 cut(s) 574
TaaI ACNGT 3 cut(s) 153, 175, 458
TaqI TCGA 4 cut(s) 505, 607, 772, 912
TatI WGTACW 3 cut(s) 210, 227, 907
TfiI GAWTC 4 cut(s) 52, 502, 532, 1091
Tru1I TTAA 4 cut(s) 122, 410, 435, 1151
Tru9I TTAA 4 cut(s) 122, 410, 435, 1151
TscAI CASTG 1 cut(s) 461
TseI GCWGC 1 cut(s) 889
TspDTI ATGAA 4 cut(s) 281, 395, 630, 939
TspGWI ACGGA 1 cut(s) 1215
TspRI CASTG 1 cut(s) 461
VneI GTGCAC 1 cut(s) 637
VspI ATTAAT 2 cut(s) 122, 435
XapI RAATTY 5 cut(s) 388, 685, 804, 938, 967
XceI RCATGY 1 cut(s) 1076
XmaJI CCTAGG 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 1077
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 5 cut(s) 6, 33, 353, 575, 647
ZrmI AGTACT 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.