Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012032

Physical Location & Seq

Genomic Coordinates Reverse (-)

1031350 .. 1034417

Gene Structure 3068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1013300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGTTAGAAAGCAAGGAGGAGTGATGTGGCCTAGATTAGTGGCAAACAAGATTCTGAGAAAGCAATTGGGAAGCAACAACTTTGTAGCAGATTTTCCAAGCAACGATGTCTCGGAAGGATTAGTGCTGGAAACACCAAGCGATGATCAACCGTCTTCAAACCCTACGTCCACCGTCTTCAATCAGCAGAAGGACACTAGCACACACAAGTACAAGGTTTTTGTTAGTACATGGAATGTTGGTGGGGTGGAACCTCAAGAAGATATGAATATGGAGGATTTGATTGACACGTCCTGTGACATCTATGTTTTTGGGTTTCAAGAAATCGTTCCTCTGAAAGCCTCCAATGTTCTAGGATCGGAGAATAGTAAGATCTGCATGAAATGGAATTCCTTAATCAGAGAAGCTTTAAACAAGAATAGACACAACAATATTAAAGATCCACACTTCTACTGTATTGTAAGCAAGCAAATGGTGGGGATACTAGTATCAATTTGGATTCGAAGCAATCTGCGTCCATTTATTCGGAATCCAAGTGTCTCCTGTGTTGGATGTGGGATCATGGGATGCCTAGGAAATAAGGGTTCGGTTTCTGTTAGGTTTCGGTTACATGAAACAAGCTTTTGCTTTGTGTGCACTCATCTAGCTTCAGGGAGTAGAGAAGGAGATGAGAAACTGAGAAATTCTAACATATCCGATATATTGTCAAGAACAAGTTTTCCTAGAGGCCCTTTGCTTGATTTGCCCCGAAAGATCCTAGATTATGATCGAGTAATTTTCCTCGGAGATTTGAATTATAGAATTTCCCTTCCAGAAGCAACAACGCGTTCGTTGGTGGATACAAGAGAATGGAATACCTTACTAAAACATGATCAGCTGATGATGGAGCTCAAAGAGGGACAAGTACTCGAAGGTTGGAACGAAGGAGCTGTTGAATTTGCTCCCACTTACAAATATTGTCCAAATTCTGATGTATACTATGGGTGTTGTCCGGGAAAGAAAGGTGAAAAGAAGCGTGCTCCTGCATGGTGTGATCGGATAATTTGGCGCAGAGAAGGATTGAAGCAATATGTATACAATAGAGGTGAATCAAAACTGTCTGATCACAGACCTGTGAATGCAATATTCACTGCCGAAGTTAGGCTTTCAAGAACATTGAGAGGATACCATAGCTTTTTTTTATCTGACAGGTTTGAGAGAATATCAAGCCAGTTTCAAATATCCTCCACCGATAATTTTCTCCGTAAAGGTAGATCAACAAGCTTGAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019637 GO:0030100 GO:0030258 GO:0031323 GO:0032879 GO:0033554 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048259 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051716 GO:0052866 GO:0060627 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0104004 GO:0106019 GO:2000369 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

425

Amino Acids

48.37

Weight (kDa)

9.1

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	77 - 374	2.5e-70	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01900 AT2G01900 AT2G01900
fragaria_vesca	FvH4_4g26100
malus_domestica	MD13G1015800.v1.1 MD16G1013300.v1.1
prunus_persica	Prupe.1G337900_v2.0.a1 Prupe.1G337900_v2.0.a1
pyrus_communis	pycom16g01240
rosa_chinensis	RchiOBHm_Chr4g0433671
rosa_laevigata	RLG00000006740
rosa_multiflora	Rmu_sc0000312.1_g000022
rosa_roxburghii	Rroxscaffold_5G00375110
rosa_rugosa	Rorug04G0270000
rosa_samantha	Rh4AG325000 Rh4BG332700 Rh4CG348000 Rh4DG329400
rosa_wichuraiana	Rw4G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	975, 1074
AccII	CGCG	1 cut(s)	826
AclWI	GGATC	4 cut(s)	364, 434, 566, 748
AcsI	RAATTY	5 cut(s)	388, 682, 801, 935, 964
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	3 cut(s)	212, 229, 906
AfiI	CCNNNNNNNGG	1 cut(s)	1140
AflIII	ACRYGT	2 cut(s)	288, 824
AgsI	TTSAA	9 cut(s)	159, 181, 320, 793, 935, 1063, 1149, 1217, 1267
AhlI	ACTAGT	1 cut(s)	484
AjiI	CACGTC	1 cut(s)	291
AloI	GAACNNNNNNTCC	2 cut(s)	703, 735
AluBI	AGCT	8 cut(s)	407, 621, 647, 877, 889, 929, 1173, 1263
AluI	AGCT	8 cut(s)	407, 621, 647, 877, 889, 929, 1173, 1263
Alw21I	GWGCWC	3 cut(s)	638, 891, 1021
Alw26I	GTCTC	2 cut(s)	115, 544
Alw44I	GTGCAC	1 cut(s)	634
AlwI	GGATC	4 cut(s)	364, 434, 566, 748
AoxI	GGCC	2 cut(s)	29, 727
ApaLI	GTGCAC	1 cut(s)	634
ApoI	RAATTY	5 cut(s)	388, 682, 801, 935, 964
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
Asp700I	GAANNNNTTC	1 cut(s)	327
AspA2I	CCTAGG	1 cut(s)	571
AspLEI	GCGC	1 cut(s)	1050
AspS9I	GGNCC	1 cut(s)	728
AsuC2I	CCSGG	1 cut(s)	993
AsuHPI	GGTGA	2 cut(s)	1016, 1097
AsuII	TTCGAA	1 cut(s)	502
AvrII	CCTAGG	1 cut(s)	571
BaeGI	GKGCMC	1 cut(s)	638
BanII	GRGCYC	1 cut(s)	891
BbsI	GAAGAC	2 cut(s)	147, 169
Bbv12I	GWGCWC	3 cut(s)	638, 891, 1021
BccI	CCATC	1 cut(s)	877
BciVI	GTATCC	3 cut(s)	474, 832, 1157
BclI	TGATCA	3 cut(s)	145, 871, 1102
BcnI	CCSGG	1 cut(s)	993
BcoDI	GTCTC	2 cut(s)	115, 544
BcuI	ACTAGT	1 cut(s)	484
BfaI	CTAG	8 cut(s)	33, 198, 353, 485, 572, 644, 723, 758
BfuI	GTATCC	3 cut(s)	474, 832, 1157
BglII	AGATCT	1 cut(s)	372
BlnI	CCTAGG	1 cut(s)	571
BmcAI	AGTACT	1 cut(s)	906
Bme1390I	CCNGG	1 cut(s)	993
BmgBI	CACGTC	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	993
BmsI	GCATC	1 cut(s)	557
BpiI	GAAGAC	2 cut(s)	147, 169
Bpu14I	TTCGAA	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	993
BsaBI	GATNNNNATC	1 cut(s)	765
BsaJI	CCNNGG	2 cut(s)	571, 781
Bsc4I	CCNNNNNNNGG	1 cut(s)	1140
Bse1I	ACTGG	1 cut(s)	1210
Bse8I	GATNNNNATC	1 cut(s)	765
BseDI	CCNNGG	2 cut(s)	571, 781
BseGI	GGATG	2 cut(s)	557, 572
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	1 cut(s)	1140
BseMII	CTCAG	2 cut(s)	47, 668
BseNI	ACTGG	1 cut(s)	1210
BseRI	GAGGAG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	638
Bsh1236I	CGCG	1 cut(s)	826
BshFI	GGCC	2 cut(s)	31, 729
BsiHKAI	GWGCWC	3 cut(s)	638, 891, 1021
BsiSI	CCGG	1 cut(s)	992
BslFI	GGGAC	1 cut(s)	912
BslI	CCNNNNNNNGG	1 cut(s)	1140
BsmAI	GTCTC	2 cut(s)	115, 544
BsmFI	GGGAC	1 cut(s)	912
BsmI	GAATGC	1 cut(s)	1123
BsnI	GGCC	2 cut(s)	31, 729
Bsp119I	TTCGAA	1 cut(s)	502
Bsp1286I	GDGCHC	3 cut(s)	638, 891, 1021
BspANI	GGCC	2 cut(s)	31, 729
BspCNI	CTCAG	2 cut(s)	48, 669
BspFNI	CGCG	1 cut(s)	826
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	4 cut(s)	364, 434, 566, 748
BspT104I	TTCGAA	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	1210
BssECI	CCNNGG	2 cut(s)	571, 781
BssNAI	GTATAC	2 cut(s)	976, 1075
BssT1I	CCWWGG	1 cut(s)	571
Bst1107I	GTATAC	2 cut(s)	976, 1075
Bst4CI	ACNGT	4 cut(s)	153, 175, 455, 1098
BstBI	TTCGAA	1 cut(s)	502
BstC8I	GCNNGC	2 cut(s)	467, 1017
BstDEI	CTNAG	2 cut(s)	56, 677
BstF5I	GGATG	2 cut(s)	557, 572
BstFNI	CGCG	1 cut(s)	826
BstHHI	GCGC	1 cut(s)	1050
BstMAI	GTCTC	2 cut(s)	115, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	633, 742
BstSCI	CCNGG	1 cut(s)	991
BstSLI	GKGCMC	1 cut(s)	638
BstUI	CGCG	1 cut(s)	826
BstV2I	GAAGAC	2 cut(s)	147, 169
BstX2I	RGATCY	3 cut(s)	372, 439, 753
BstYI	RGATCY	3 cut(s)	372, 439, 753
BstZ17I	GTATAC	2 cut(s)	976, 1075
BsuI	GTATCC	3 cut(s)	474, 832, 1157
BsuRI	GGCC	2 cut(s)	31, 729
BtgZI	GCGATG	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	557, 572
BtsI	GCAGTG	1 cut(s)	1128
BtsIMutI	CAGTG	1 cut(s)	1128
Cac8I	GCNNGC	2 cut(s)	467, 1017
CfoI	GCGC	1 cut(s)	1050
Cfr13I	GGNCC	1 cut(s)	728
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	3 cut(s)	211, 228, 905
CviAII	CATG	6 cut(s)	231, 379, 562, 611, 869, 1026
CviQI	GTAC	3 cut(s)	211, 228, 905
DdeI	CTNAG	2 cut(s)	56, 677
DraI	TTTAAA	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	889
Eco130I	CCWWGG	1 cut(s)	571
Eco24I	GRGCYC	1 cut(s)	891
Eco53kI	GAGCTC	1 cut(s)	889
Eco57I	CTGAAG	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	889
EcoO109I	RGGNCCY	1 cut(s)	728
EcoRI	GAATTC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	571
EcoT38I	GRGCYC	1 cut(s)	891
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	6 cut(s)	234, 382, 565, 614, 872, 1029
FalI	AAGNNNNNCTT	2 cut(s)	1128, 1160
FaqI	GGGAC	1 cut(s)	912
FatI	CATG	6 cut(s)	230, 378, 561, 610, 868, 1025
FbaI	TGATCA	3 cut(s)	145, 871, 1102
FblI	GTMKAC	2 cut(s)	975, 1074
FokI	GGATG	2 cut(s)	564, 579
FriOI	GRGCYC	1 cut(s)	891
FspBI	CTAG	8 cut(s)	33, 198, 353, 485, 572, 644, 723, 758
GlaI	GCGC	1 cut(s)	1049
HaeIII	GGCC	2 cut(s)	31, 729
HapII	CCGG	1 cut(s)	992
HgaI	GACGC	1 cut(s)	503
HhaI	GCGC	1 cut(s)	1050
Hin1II	CATG	6 cut(s)	234, 382, 565, 614, 872, 1029
Hin6I	GCGC	1 cut(s)	1048
HinP1I	GCGC	1 cut(s)	1048
HindIII	AAGCTT	3 cut(s)	405, 619, 1261
HinfI	GANTC	4 cut(s)	52, 499, 529, 1088
HpaII	CCGG	1 cut(s)	992
HphI	GGTGA	2 cut(s)	1016, 1097
Hpy166II	GTNNAC	4 cut(s)	171, 636, 976, 1075
Hpy188III	TCNNGA	5 cut(s)	257, 320, 708, 812, 1149
Hpy8I	GTNNAC	4 cut(s)	171, 636, 976, 1075
HpyAV	CCTTC	7 cut(s)	110, 184, 656, 818, 905, 917, 1049
HpyCH4III	ACNGT	4 cut(s)	153, 175, 455, 1098
HpyCH4IV	ACGT	2 cut(s)	167, 290
HpyCH4V	TGCA	4 cut(s)	378, 636, 1025, 1121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	633, 742
HpyF3I	CTNAG	2 cut(s)	56, 677
HpySE526I	ACGT	2 cut(s)	167, 290
Hsp92II	CATG	6 cut(s)	234, 382, 565, 614, 872, 1029
HspAI	GCGC	1 cut(s)	1048
Ksp22I	TGATCA	3 cut(s)	145, 871, 1102
LmnI	GCTCC	4 cut(s)	886, 926, 946, 1024
LweI	GCATC	1 cut(s)	557
MaeI	CTAG	8 cut(s)	33, 198, 353, 485, 572, 644, 723, 758
MaeII	ACGT	2 cut(s)	167, 290
MaeIII	GTNAC	2 cut(s)	296, 606
MboII	GAAGA	3 cut(s)	147, 169, 272
MfeI	CAATTG	1 cut(s)	65
MflI	RGATCY	3 cut(s)	372, 439, 753
MhlI	GDGCHC	3 cut(s)	638, 891, 1021
MluI	ACGCGT	1 cut(s)	824
MmeI	TCCRAC	2 cut(s)	529, 896
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	3 cut(s)	395, 410, 435
MspA1I	CMGCKG	1 cut(s)	877
MspI	CCGG	1 cut(s)	992
MspR9I	CCNGG	1 cut(s)	993
MunI	CAATTG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	1123
MvnI	CGCG	1 cut(s)	826
MwoI	GCNNNNNNNGC	2 cut(s)	633, 742
NciI	CCSGG	1 cut(s)	993
NlaIII	CATG	6 cut(s)	234, 382, 565, 614, 872, 1029
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	296
NspV	TTCGAA	1 cut(s)	502
PctI	GAATGC	1 cut(s)	1123
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	4 cut(s)	52, 499, 529, 1088
PfoI	TCCNGGA	1 cut(s)	991
Psp124BI	GAGCTC	1 cut(s)	891
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	728
PsuI	RGATCY	3 cut(s)	372, 439, 753
PvuII	CAGCTG	1 cut(s)	877
RsaI	GTAC	3 cut(s)	212, 229, 906
RsaNI	GTAC	3 cut(s)	211, 228, 905
SacI	GAGCTC	1 cut(s)	891
SaqAI	TTAA	3 cut(s)	395, 410, 435
Sau96I	GGNCC	1 cut(s)	728
ScaI	AGTACT	1 cut(s)	906
ScrFI	CCNGG	1 cut(s)	993
SduI	GDGCHC	3 cut(s)	638, 891, 1021
SfaNI	GCATC	1 cut(s)	557
SfuI	TTCGAA	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
SpeI	ACTAGT	1 cut(s)	484
SspI	AATATT	3 cut(s)	433, 956, 1125
SspMI	CTAG	8 cut(s)	33, 198, 353, 485, 572, 644, 723, 758
SstI	GAGCTC	1 cut(s)	891
StyD4I	CCNGG	1 cut(s)	991
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	4 cut(s)	153, 175, 455, 1098
TaiI	ACGT	2 cut(s)	170, 293
TaqI	TCGA	3 cut(s)	502, 769, 909
TatI	WGTACW	3 cut(s)	210, 227, 904
TfiI	GAWTC	4 cut(s)	52, 499, 529, 1088
Tru1I	TTAA	3 cut(s)	395, 410, 435
Tru9I	TTAA	3 cut(s)	395, 410, 435
TscAI	CASTG	1 cut(s)	1135
TseFI	GTSAC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	3 cut(s)	281, 395, 627
TspGWI	ACGGA	1 cut(s)	1232
TspRI	CASTG	1 cut(s)	1135
VneI	GTGCAC	1 cut(s)	634
XapI	RAATTY	5 cut(s)	388, 682, 801, 935, 964
XmaJI	CCTAGG	1 cut(s)	571
XmiI	GTMKAC	2 cut(s)	975, 1074
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	8 cut(s)	33, 198, 353, 485, 572, 644, 723, 758
ZrmI	AGTACT	1 cut(s)	906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.