AT2G02080

zinc finger

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
518079 .. 521737
3659 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02080.2

Sequence Viewer

Length: 1551 bp
ATGTCGTCATCATCATATAACACAAGCGTTATTCCTTCATCATCATCCTCTGCTCAGCCTTTCTTCATCACCAGCTCCGGCACCGGAGATAACGACTTTAACCGGAAAGATACTTTTATGTCAATGATTCAACAACCTAACTCCTCAGCTCCACCACCCAAGAAACGAAGAAACCAACCCGGAAACCCAAATCCTGATGCGGAAGTGGTAGCATTATCTCCAAAGACACTAATGGCTACAAACAGATTCATATGCGATGTATGTAACAAAGGGTTTCAAAGAGAACAAAATCTACAGCTTCACCGAAGAGGACACAATCTCCCATGGAAGCTGAAACAAAAATCAACCAAAGAAGTGAAGAGGAAAGTGTATCTTTGTCCGGAGCCAACGTGCGTTCACCATGACCCGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAGCATTATTACCGTAAACATGGCGAAAAGAAGTGGAAATGTGAGAAATGTTCTAAGCGTTACGCTGTTCAATCAGATTGGAAAGCTCACTCTAAGACTTGTGGTACTAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAGACGTGATAGTTACATCACGCATAGGGCTTTCTGCGATGCATTGATACAAGAGACTGCAAGAAACCCTACCGTGAGCTTTACGTCAATGACAGCTGCTAGTAGTGGTGTCGGCTCCGGCGGAATCTACGGGAGACTTGGCGGTGGCAGTGCTCTCTCACACCACCATTTGAGTGACCATCCAAATTTTGGATTTAACCCTCTCGTGGGTTACAATCTGAACATTGCATCTTCTGATAATAGGAGAGACTTTATTCCGCAATCATCAAACCCTAACTTCCTAATCCAAAGCGCTTCGAGCCAAGGAATGTTGAATACAACGCCAAACAACAATAACCAGAGTTTCATGAACCAGCATGGTCTGATACAGTTTGATCCAGTCGACAACATCAACCTCAAGAGTAGCGGCACCAACAACAGCTTCTTCAACCTCGGATTCTTTCAAGAAAACACGAAGAACTCAGAGACGAGTCTTCCTTCTCTATATAGCACCGACGTTCTTGTTCATCACCGTGAAGAAAACTTGAACGCGGGTTCTAACGTGTCAGCCACGGCACTACTTCAGAAAGCTACACAAATGGGTTCAGTCACAAGCAACGACCCATCTGCTTTGTTCAGAGGCTTAGCTTCTTCGTCTAACTCATCAAGTGTTATCGCTAATCACTTTGGTGGAGGACGAATTATGGAGAATGATAATAATGGAAACCTTCAAGGTCTAATGAACTCATTAGCCGCCGTTAATGGAGGTGGCGGATCCGGTGGCAGTATCTTCGACGTTCAATTTGGAGACAATGGAAATATGAGCGGCTCGGACAAGTTAACGTTAGATTTTCTTGGAGTTGGAGGAATGGTGAGAAATGTAAATCGCGGTGGTGGTGGTGGTGGTCGCGGCAGTGCTCGTGGCGGAGTTTCTTTGGATGGTGAGGCGAAGTTTCCTGAGCAAAATTATCCATTTGGAAGAGGTTGA

Protein Analysis

516

Amino Acids

55.79

Weight (kDa)

9.35

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 43 - 77 3.2e-22 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 81 - 105 4.3e-15 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 108 - 148 1.4e-23 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 572
AccB1I GGYRCC 3 cut(s) 80, 572, 992
AccB7I CCANNNNNTGG 1 cut(s) 773
AccBSI CCGCTC 1 cut(s) 1389
AccI GTMKAC 1 cut(s) 966
AccII CGCG 3 cut(s) 1115, 1452, 1473
AccIII TCCGGA 1 cut(s) 379
AclI AACGTT 1 cut(s) 1406
AclWI GGATC 3 cut(s) 953, 1332, 1345
AcsI RAATTY 1 cut(s) 769
AcuI CTGAAG 1 cut(s) 1130
AcvI CACGTG 1 cut(s) 413
AfaI GTAC 2 cut(s) 547, 574
AfeI AGCGCT 1 cut(s) 877
AfiI CCNNNNNNNGG 3 cut(s) 773, 790, 791
AflIII ACRYGT 1 cut(s) 1125
AgsI TTSAA 9 cut(s) 131, 278, 512, 898, 1012, 1028, 1111, 1295, 1364
AjiI CACGTC 1 cut(s) 590
AjuI GAANNNNNNNTTGG 2 cut(s) 989, 1021
AleI CACNNNNGTG 1 cut(s) 1251
Alw21I GWGCWC 3 cut(s) 418, 739, 1483
Alw26I GTCTC 6 cut(s) 417, 632, 712, 825, 1043, 1365
AlwI GGATC 3 cut(s) 953, 1332, 1345
Aor13HI TCCGGA 1 cut(s) 379
Aor51HI AGCGCT 1 cut(s) 877
ApeKI GCWGC 1 cut(s) 680
ApoI RAATTY 1 cut(s) 769
ArsI GACNNNNNNTTYG 2 cut(s) 1349, 1381
Asp718I GGTACC 1 cut(s) 572
AspLEI GCGC 1 cut(s) 878
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 7 cut(s) 61, 293, 389, 421, 1085, 1447, 1517
BaeI ACNNNNGTAYC 2 cut(s) 556, 589
BamHI GGATCC 1 cut(s) 1337
BanI GGYRCC 3 cut(s) 80, 572, 992
BarI GAAGNNNNNNTAC 2 cut(s) 434, 466
BauI CACGAG 2 cut(s) 788, 1482
BbrPI CACGTG 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 1049
Bbv12I GWGCWC 3 cut(s) 418, 739, 1483
BbvCI CCTCAGC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 667
BccI CCATC 4 cut(s) 584, 771, 1195, 1496
BceAI ACGGC 2 cut(s) 1152, 1304
BcgI CGANNNNNNTGC 4 cut(s) 1172, 1206, 1336, 1370
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 6 cut(s) 417, 632, 712, 825, 1043, 1365
BfaI CTAG 2 cut(s) 585, 684
BfmI CTRYAG 1 cut(s) 293
BfoI RGCGCY 1 cut(s) 879
BisI GCNGC 5 cut(s) 681, 991, 1317, 1390, 1474
BlpI GCTNAGC 2 cut(s) 54, 1207
BlsI GCNGC 5 cut(s) 682, 992, 1318, 1391, 1475
Bme1390I CCNGG 1 cut(s) 180
BmgBI CACGTC 1 cut(s) 590
BmiI GGNNCC 6 cut(s) 82, 384, 574, 700, 994, 1339
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 3 cut(s) 187, 613, 821
BpiI GAAGAC 1 cut(s) 1049
Bpu10I CCTNAGC 2 cut(s) 145, 1521
Bpu1102I GCTNAGC 2 cut(s) 54, 1207
BpuEI CTTGAG 1 cut(s) 965
BpuMI CCSGG 1 cut(s) 180
Bsa29I ATCGAT 1 cut(s) 559
BsaAI YACGTR 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 4 cut(s) 323, 886, 1015, 1134
BsaWI WCCGGW 5 cut(s) 83, 102, 379, 431, 1340
BsaXI ACNNNNNCTCC 6 cut(s) 303, 333, 374, 404, 1419, 1449
Bsc4I CCNNNNNNNGG 3 cut(s) 773, 790, 791
Bse1I ACTGG 1 cut(s) 962
Bse3DI GCAATG 1 cut(s) 807
BseAI TCCGGA 1 cut(s) 379
BseCI ATCGAT 1 cut(s) 559
BseDI CCNNGG 4 cut(s) 323, 886, 1015, 1134
BseGI GGATG 3 cut(s) 44, 763, 1507
BseLI CCNNNNNNNGG 3 cut(s) 773, 790, 791
BseMI GCAATG 1 cut(s) 807
BseMII CTCAG 4 cut(s) 68, 159, 1059, 1512
BseNI ACTGG 1 cut(s) 962
BseRI GAGGAG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 667
Bsh1236I CGCG 3 cut(s) 1115, 1452, 1473
BshNI GGYRCC 3 cut(s) 80, 572, 992
BshVI ATCGAT 1 cut(s) 559
BsiHKAI GWGCWC 3 cut(s) 418, 739, 1483
BsiSI CCGG 8 cut(s) 78, 84, 103, 180, 380, 432, 702, 1341
BslI CCNNNNNNNGG 3 cut(s) 773, 790, 791
BsmAI GTCTC 6 cut(s) 417, 632, 712, 825, 1043, 1365
BsmBI CGTCTC 1 cut(s) 1043
Bso31I GGTCTC 1 cut(s) 417
Bsp1286I GDGCHC 3 cut(s) 418, 739, 1483
Bsp13I TCCGGA 1 cut(s) 379
Bsp143I GATC 2 cut(s) 958, 1337
Bsp1720I GCTNAGC 2 cut(s) 54, 1207
Bsp19I CCATGG 1 cut(s) 323
BspCNI CTCAG 4 cut(s) 67, 158, 1058, 1513
BspDI ATCGAT 1 cut(s) 559
BspEI TCCGGA 1 cut(s) 379
BspFNI CGCG 3 cut(s) 1115, 1452, 1473
BspHI TCATGA 1 cut(s) 930
BspLI GGNNCC 6 cut(s) 82, 384, 574, 700, 994, 1339
BspPI GGATC 3 cut(s) 953, 1332, 1345
BspT107I GGYRCC 3 cut(s) 80, 572, 992
BspTNI GGTCTC 1 cut(s) 417
BsrBI CCGCTC 1 cut(s) 1389
BsrDI GCAATG 1 cut(s) 807
BsrI ACTGG 1 cut(s) 962
BssECI CCNNGG 4 cut(s) 323, 886, 1015, 1134
BssMI GATC 2 cut(s) 958, 1337
BssSI CACGAG 2 cut(s) 788, 1482
BssT1I CCWWGG 2 cut(s) 323, 886
Bst2BI CACGAG 2 cut(s) 788, 1482
Bst4CI ACNGT 5 cut(s) 455, 569, 658, 954, 1097
Bst6I CTCTTC 3 cut(s) 301, 353, 1537
BstBAI YACGTR 1 cut(s) 413
BstDEI CTNAG 7 cut(s) 54, 145, 495, 534, 1045, 1207, 1521
BstDSI CCRYGG 2 cut(s) 323, 1134
BstF5I GGATG 3 cut(s) 44, 763, 1507
BstFNI CGCG 3 cut(s) 1115, 1452, 1473
BstH2I RGCGCY 1 cut(s) 879
BstHHI GCGC 1 cut(s) 878
BstKTI GATC 2 cut(s) 961, 1340
BstMAI GTCTC 6 cut(s) 417, 632, 712, 825, 1043, 1365
BstMBI GATC 2 cut(s) 958, 1337
BstMWI GCNNNNNNNGC 1 cut(s) 882
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 293
BstUI CGCG 3 cut(s) 1115, 1452, 1473
BstV1I GCAGC 1 cut(s) 667
BstV2I GAAGAC 1 cut(s) 1049
BstX2I RGATCY 1 cut(s) 1337
BstYI RGATCY 1 cut(s) 1337
Bsu15I ATCGAT 1 cut(s) 559
BsuTUI ATCGAT 1 cut(s) 559
BtgI CCRYGG 2 cut(s) 323, 1134
BtgZI GCGATG 2 cut(s) 270, 636
BtrI CACGTC 1 cut(s) 590
BtsCI GGATG 3 cut(s) 44, 763, 1507
BtsI GCAGTG 2 cut(s) 739, 1483
BtsIMutI CAGTG 2 cut(s) 739, 1483
CciI TCATGA 1 cut(s) 930
CfoI GCGC 1 cut(s) 878
ClaI ATCGAT 1 cut(s) 559
Csp6I GTAC 2 cut(s) 546, 573
CviAII CATG 5 cut(s) 324, 401, 461, 931, 941
CviQI GTAC 2 cut(s) 546, 573
DdeI CTNAG 7 cut(s) 54, 145, 495, 534, 1045, 1207, 1521
DpnI GATC 2 cut(s) 960, 1339
DpnII GATC 2 cut(s) 958, 1337
Eam1104I CTCTTC 3 cut(s) 301, 353, 1537
EarI CTCTTC 3 cut(s) 301, 353, 1537
EciI GGCGGA 3 cut(s) 720, 1350, 1503
Eco130I CCWWGG 2 cut(s) 323, 886
Eco31I GGTCTC 1 cut(s) 417
Eco47III AGCGCT 1 cut(s) 877
Eco57I CTGAAG 1 cut(s) 1130
Eco72I CACGTG 1 cut(s) 413
EcoT14I CCWWGG 2 cut(s) 323, 886
EcoT22I ATGCAT 1 cut(s) 628
ErhI CCWWGG 2 cut(s) 323, 886
Esp3I CGTCTC 1 cut(s) 1043
FaeI CATG 5 cut(s) 327, 404, 464, 934, 944
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FatI CATG 5 cut(s) 323, 400, 460, 930, 940
FauI CCCGC 1 cut(s) 1108
FauNDI CATATG 1 cut(s) 251
FblI GTMKAC 1 cut(s) 966
Fnu4HI GCNGC 5 cut(s) 681, 991, 1317, 1390, 1474
FokI GGATG 3 cut(s) 31, 750, 1514
Fsp4HI GCNGC 5 cut(s) 681, 991, 1317, 1390, 1474
FspBI CTAG 2 cut(s) 585, 684
GlaI GCGC 1 cut(s) 877
GluI GCNGC 5 cut(s) 681, 991, 1317, 1390, 1474
HaeII RGCGCY 1 cut(s) 879
HapII CCGG 8 cut(s) 78, 84, 103, 180, 380, 432, 702, 1341
HhaI GCGC 1 cut(s) 878
Hin1II CATG 5 cut(s) 327, 404, 464, 934, 944
Hin6I GCGC 1 cut(s) 876
HinP1I GCGC 1 cut(s) 876
HincII GTYRAC 2 cut(s) 967, 1404
HindII GTYRAC 2 cut(s) 967, 1404
HinfI GANTC 6 cut(s) 127, 246, 435, 708, 1020, 1054
HpaI GTTAAC 1 cut(s) 1404
HpaII CCGG 8 cut(s) 78, 84, 103, 180, 380, 432, 702, 1341
HphI GGTGA 7 cut(s) 61, 293, 389, 421, 1085, 1447, 1517
Hpy166II GTNNAC 4 cut(s) 397, 458, 967, 1404
Hpy188III TCNNGA 8 cut(s) 194, 380, 439, 585, 931, 982, 1028, 1520
Hpy8I GTNNAC 4 cut(s) 397, 458, 967, 1404
Hpy99I CGWCG 2 cut(s) 1082, 1361
HpyAV CCTTC 3 cut(s) 45, 1071, 1301
HpyCH4III ACNGT 5 cut(s) 455, 569, 658, 954, 1097
HpyCH4IV ACGT 8 cut(s) 389, 412, 589, 668, 1080, 1125, 1359, 1406
HpyCH4V TGCA 3 cut(s) 626, 644, 812
HpyF10VI GCNNNNNNNGC 1 cut(s) 882
HpyF3I CTNAG 7 cut(s) 54, 145, 495, 534, 1045, 1207, 1521
HpySE526I ACGT 8 cut(s) 389, 412, 589, 668, 1080, 1125, 1359, 1406
Hsp92II CATG 5 cut(s) 327, 404, 464, 934, 944
HspAI GCGC 1 cut(s) 876
Kpn2I TCCGGA 1 cut(s) 379
KpnI GGTACC 1 cut(s) 576
KspAI GTTAAC 1 cut(s) 1404
Kzo9I GATC 2 cut(s) 958, 1337
LmnI GCTCC 4 cut(s) 80, 154, 382, 704
Lsp1109I GCAGC 1 cut(s) 667
LweI GCATC 3 cut(s) 187, 613, 821
MaeI CTAG 2 cut(s) 585, 684
MaeII ACGT 8 cut(s) 389, 412, 589, 668, 1080, 1125, 1359, 1406
MaeIII GTNAC 8 cut(s) 263, 408, 500, 563, 596, 758, 794, 1171
MalI GATC 2 cut(s) 960, 1339
MbiI CCGCTC 1 cut(s) 1389
MboI GATC 2 cut(s) 958, 1337
MflI RGATCY 1 cut(s) 1337
MhlI GDGCHC 3 cut(s) 418, 739, 1483
MluCI AATT 4 cut(s) 769, 1263, 1364, 1528
MlyI GAGTC 1 cut(s) 1063
MmeI TCCRAC 1 cut(s) 1405
Mph1103I ATGCAT 1 cut(s) 628
MroI TCCGGA 1 cut(s) 379
MseI TTAA 4 cut(s) 99, 780, 1323, 1403
MslI CAYNNNNRTG 3 cut(s) 756, 1095, 1251
MspA1I CMGCKG 1 cut(s) 680
MspI CCGG 8 cut(s) 78, 84, 103, 180, 380, 432, 702, 1341
MspR9I CCNGG 1 cut(s) 180
MvnI CGCG 3 cut(s) 1115, 1452, 1473
MwoI GCNNNNNNNGC 1 cut(s) 882
NciI CCSGG 1 cut(s) 180
NcoI CCATGG 1 cut(s) 323
NdeI CATATG 1 cut(s) 251
NdeII GATC 2 cut(s) 958, 1337
NlaIII CATG 5 cut(s) 327, 404, 464, 934, 944
NlaIV GGNNCC 6 cut(s) 82, 384, 574, 700, 994, 1339
NmuCI GTSAC 4 cut(s) 408, 563, 758, 1171
NsiI ATGCAT 1 cut(s) 628
OliI CACNNNNGTG 1 cut(s) 1251
PagI TCATGA 1 cut(s) 930
PfeI GAWTC 5 cut(s) 127, 246, 435, 708, 1020
PflMI CCANNNNNTGG 1 cut(s) 773
PkrI GCNGC 5 cut(s) 682, 992, 1318, 1391, 1475
PleI GAGTC 1 cut(s) 1062
PmaCI CACGTG 1 cut(s) 413
PmlI CACGTG 1 cut(s) 413
PpsI GAGTC 1 cut(s) 1062
Ppu21I YACGTR 1 cut(s) 413
Psp1406I AACGTT 1 cut(s) 1406
PspCI CACGTG 1 cut(s) 413
PspN4I GGNNCC 6 cut(s) 82, 384, 574, 700, 994, 1339
PsrI GAACNNNNNNTAC 2 cut(s) 276, 308
PsuI RGATCY 1 cut(s) 1337
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 2 cut(s) 547, 574
RsaNI GTAC 2 cut(s) 546, 573
RseI CAYNNNNRTG 3 cut(s) 756, 1095, 1251
SalI GTCGAC 1 cut(s) 965
SaqAI TTAA 4 cut(s) 99, 780, 1323, 1403
SatI GCNGC 5 cut(s) 681, 991, 1317, 1390, 1474
Sau3AI GATC 2 cut(s) 958, 1337
SchI GAGTC 1 cut(s) 1063
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 3 cut(s) 418, 739, 1483
SfaNI GCATC 3 cut(s) 187, 613, 821
SfcI CTRYAG 1 cut(s) 293
SmiMI CAYNNNNRTG 3 cut(s) 756, 1095, 1251
SmlI CTYRAG 1 cut(s) 980
SmoI CTYRAG 1 cut(s) 980
Sse9I AATT 4 cut(s) 769, 1263, 1364, 1528
SspMI CTAG 2 cut(s) 585, 684
StyD4I CCNGG 1 cut(s) 178
StyI CCWWGG 2 cut(s) 323, 886
TaaI ACNGT 5 cut(s) 455, 569, 658, 954, 1097
TaiI ACGT 8 cut(s) 392, 415, 592, 671, 1083, 1128, 1362, 1409
TaqI TCGA 4 cut(s) 559, 881, 966, 1356
TasI AATT 4 cut(s) 769, 1263, 1364, 1528
TauI GCSGC 4 cut(s) 993, 1319, 1392, 1476
TfiI GAWTC 5 cut(s) 127, 246, 435, 708, 1020
Tru1I TTAA 4 cut(s) 99, 780, 1323, 1403
Tru9I TTAA 4 cut(s) 99, 780, 1323, 1403
TscAI CASTG 2 cut(s) 739, 1483
TseFI GTSAC 4 cut(s) 408, 563, 758, 1171
TseI GCWGC 1 cut(s) 680
Tsp45I GTSAC 4 cut(s) 408, 563, 758, 1171
TspDTI ATGAA 7 cut(s) 27, 55, 238, 919, 947, 1079, 1319
TspRI CASTG 2 cut(s) 739, 1483
Van91I CCANNNNNTGG 1 cut(s) 773
XapI RAATTY 1 cut(s) 769
XbaI TCTAGA 1 cut(s) 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 770
XmiI GTMKAC 1 cut(s) 966
XspI CTAG 2 cut(s) 585, 684
Zsp2I ATGCAT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.