Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005217

Physical Location & Seq

Genomic Coordinates Forward (+)

53678264 .. 53680206

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0364600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAAGTCGAATACCAGCTTAGCGCTTCCTGGACCCAGTCTCGCTTCTGTCGAATCCTTATCCATGCCTGTTTTCCAGGAAGTTGTTCTCGCGTCTGATATACGATGTACCGGATGTCAAAGGAGACTTTCTGACATGATCTCCAAATTGGGTGCAGATATAGAGTCTGTTGTCGTGAGCGCATCGGAGAAGAAGGTTACACTTATATGTAGATATCCAAGTACTGCAGCAGCCAAGGTGCCAAGTCGGCTAGTTCCCGCGTACTGTTGCATGGTGATGAGGCTCAATGTTGATTGCAATGGATGTGTTAGGAAAGTAAGGAGAATACTACTCAACATGAAAGCTATAGAGACACATCTGATTGAGAAGCAGCAATGCAGGGTTAGTGTATGTGGGAGATTTATACCAGCAGATGTGGCAATAAAGTTGAGAAAAAAAATGAACCGCAGAGTCGAAATTCTGGAAATCCAAGAGTTTGATGAAACTACTACTGAACAGACGGACCAAAGGCCTATGATTACTGCAGCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008356 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_6 zf-C2H2_jaz

Protein Analysis

177

Amino Acids

19.72

Weight (kDa)

9.15

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14580 AT1G14580 AT1G14580 AT1G14580 AT2G02080 AT2G02080 AT2G02080 AT2G02080 AT2G02080 AT2G02080
fragaria_vesca	FvH4_4g36050 FvH4_4g36050 FvH4_4g36050 FvH4_4g36050 FvH4_4g36050 FvH4_4g36050
malus_domestica	MD13G1013000.v1.1
prunus_persica	Prupe.1G341100_v2.0.a1
pyrus_communis	pycom13g01040 pycom16g00920
rosa_chinensis	RchiOBHm_Chr4g0445671
rosa_laevigata	RLG00000005718
rosa_multiflora	Rmu_sc0003637.1_g000020
rosa_roxburghii	Rroxscaffold_5G00386150
rosa_rugosa	Rorug04G0364600
rosa_samantha	Rh4AG425500 Rh4CG452500 Rh4DG433800
rosa_wichuraiana	Rw4G036450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AccII	CGCG	2 cut(s)	92, 260
AciI	CCGC	2 cut(s)	258, 445
AcsI	RAATTY	1 cut(s)	456
AfaI	GTAC	3 cut(s)	109, 223, 263
AfeI	AGCGCT	1 cut(s)	24
AjnI	CCWGG	2 cut(s)	28, 75
AluBI	AGCT	2 cut(s)	18, 344
AluI	AGCT	2 cut(s)	18, 344
Alw26I	GTCTC	3 cut(s)	44, 118, 344
Aor51HI	AGCGCT	1 cut(s)	24
AoxI	GGCC	1 cut(s)	509
ApeKI	GCWGC	4 cut(s)	227, 230, 370, 524
ApoI	RAATTY	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	84
AspLEI	GCGC	2 cut(s)	25, 182
AspS9I	GGNCC	2 cut(s)	32, 502
AsuHPI	GGTGA	1 cut(s)	286
AvaII	GGWCC	2 cut(s)	32, 502
BanI	GGYRCC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	239, 242, 382
BciT130I	CCWGG	2 cut(s)	30, 77
BcoDI	GTCTC	3 cut(s)	44, 118, 344
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	3 cut(s)	225, 345, 522
BfoI	RGCGCY	1 cut(s)	26
BglI	GCCNNNNNGGC	1 cut(s)	247
BisI	GCNGC	4 cut(s)	228, 231, 371, 525
BlpI	GCTNAGC	1 cut(s)	19
BlsI	GCNGC	4 cut(s)	229, 232, 372, 526
BmcAI	AGTACT	1 cut(s)	223
Bme1390I	CCNGG	2 cut(s)	30, 77
Bme18I	GGWCC	2 cut(s)	32, 502
BmgT120I	GGNCC	2 cut(s)	32, 502
BmiI	GGNNCC	2 cut(s)	34, 240
BmrFI	CCNGG	2 cut(s)	30, 77
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	2 cut(s)	304, 380
BseBI	CCWGG	2 cut(s)	30, 77
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	119, 308
BseMI	GCAATG	2 cut(s)	304, 380
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	3 cut(s)	239, 242, 382
BsgI	GTGCAG	1 cut(s)	174
Bsh1236I	CGCG	2 cut(s)	92, 260
BshFI	GGCC	1 cut(s)	511
BshNI	GGYRCC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	111
BsmAI	GTCTC	3 cut(s)	44, 118, 344
BsnI	GGCC	1 cut(s)	511
Bsp143I	GATC	1 cut(s)	138
Bsp1720I	GCTNAGC	1 cut(s)	19
BspACI	CCGC	2 cut(s)	258, 445
BspANI	GGCC	1 cut(s)	511
BspFNI	CGCG	2 cut(s)	92, 260
BspLI	GGNNCC	2 cut(s)	34, 240
BspMAI	CTGCAG	2 cut(s)	229, 526
BspT107I	GGYRCC	1 cut(s)	238
BsrDI	GCAATG	2 cut(s)	304, 380
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	2 cut(s)	30, 77
Bst4CI	ACNGT	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	19
BstF5I	GGATG	2 cut(s)	119, 308
BstFNI	CGCG	2 cut(s)	92, 260
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	2 cut(s)	25, 182
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	3 cut(s)	44, 118, 344
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 416
BstNI	CCWGG	2 cut(s)	30, 77
BstSCI	CCNGG	2 cut(s)	28, 75
BstSFI	CTRYAG	3 cut(s)	225, 345, 522
BstUI	CGCG	2 cut(s)	92, 260
BstV1I	GCAGC	3 cut(s)	239, 242, 382
BsuRI	GGCC	1 cut(s)	511
BtsCI	GGATG	2 cut(s)	119, 308
CfoI	GCGC	2 cut(s)	25, 182
Cfr13I	GGNCC	2 cut(s)	32, 502
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	3 cut(s)	108, 222, 262
CviAII	CATG	4 cut(s)	64, 136, 271, 337
CviJI	RGCY	7 cut(s)	18, 233, 250, 283, 344, 511, 527
CviKI_1	RGCY	7 cut(s)	18, 233, 250, 283, 344, 511, 527
CviQI	GTAC	3 cut(s)	108, 222, 262
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	234
Eco147I	AGGCCT	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	32, 502
Eco47III	AGCGCT	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	28, 75
EcoRV	GATATC	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	4 cut(s)	67, 139, 274, 340
FatI	CATG	4 cut(s)	63, 135, 270, 336
FauI	CCCGC	1 cut(s)	265
Fnu4HI	GCNGC	4 cut(s)	228, 231, 371, 525
FokI	GGATG	2 cut(s)	126, 315
Fsp4HI	GCNGC	4 cut(s)	228, 231, 371, 525
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	2 cut(s)	24, 181
GluI	GCNGC	4 cut(s)	228, 231, 371, 525
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	511
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	2 cut(s)	25, 182
Hin1II	CATG	4 cut(s)	67, 139, 274, 340
Hin6I	GCGC	2 cut(s)	23, 180
HinP1I	GCGC	2 cut(s)	23, 180
HinfI	GANTC	3 cut(s)	53, 164, 450
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	286
Hpy188I	TCNGA	4 cut(s)	97, 133, 187, 360
Hpy188III	TCNNGA	2 cut(s)	175, 461
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	6 cut(s)	155, 227, 270, 297, 378, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 416
HpyF3I	CTNAG	1 cut(s)	19
Hsp92II	CATG	4 cut(s)	67, 139, 274, 340
HspAI	GCGC	2 cut(s)	23, 180
Kzo9I	GATC	1 cut(s)	138
Lsp1109I	GCAGC	3 cut(s)	239, 242, 382
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	202
MluCI	AATT	2 cut(s)	146, 456
MlyI	GAGTC	2 cut(s)	173, 459
MnlI	CCTC	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	205, 275
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	30, 77
MvaI	CCWGG	2 cut(s)	30, 77
MvnI	CGCG	2 cut(s)	92, 260
MwoI	GCNNNNNNNGC	2 cut(s)	247, 416
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	4 cut(s)	67, 139, 274, 340
NlaIV	GGNNCC	2 cut(s)	34, 240
PceI	AGGCCT	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	53
PflFI	GACNNNGTC	1 cut(s)	36
PfoI	TCCNGGA	2 cut(s)	28, 75
PkrI	GCNGC	4 cut(s)	229, 232, 372, 526
PleI	GAGTC	2 cut(s)	172, 458
PpsI	GAGTC	2 cut(s)	172, 458
Psp6I	CCWGG	2 cut(s)	28, 75
PspGI	CCWGG	2 cut(s)	28, 75
PspN4I	GGNNCC	2 cut(s)	34, 240
PspPI	GGNCC	2 cut(s)	32, 502
PstI	CTGCAG	2 cut(s)	229, 526
PsyI	GACNNNGTC	1 cut(s)	36
RsaI	GTAC	3 cut(s)	109, 223, 263
RsaNI	GTAC	3 cut(s)	108, 222, 262
RseI	CAYNNNNRTG	2 cut(s)	205, 275
SatI	GCNGC	4 cut(s)	228, 231, 371, 525
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	2 cut(s)	32, 502
ScaI	AGTACT	1 cut(s)	223
SchI	GAGTC	2 cut(s)	173, 459
ScrFI	CCNGG	2 cut(s)	30, 77
SetI	ASST	4 cut(s)	20, 198, 240, 346
SfaNI	GCATC	1 cut(s)	191
SfcI	CTRYAG	3 cut(s)	225, 345, 522
SinI	GGWCC	2 cut(s)	32, 502
SmiMI	CAYNNNNRTG	2 cut(s)	205, 275
Sse9I	AATT	2 cut(s)	146, 456
SseBI	AGGCCT	1 cut(s)	511
SsiI	CCGC	2 cut(s)	258, 445
SspMI	CTAG	1 cut(s)	251
StuI	AGGCCT	1 cut(s)	511
StyD4I	CCNGG	2 cut(s)	28, 75
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	3 cut(s)	8, 51, 453
TasI	AATT	2 cut(s)	146, 456
TatI	WGTACW	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	53
TseI	GCWGC	4 cut(s)	227, 230, 370, 524
TspDTI	ATGAA	4 cut(s)	17, 353, 455, 495
TspGWI	ACGGA	1 cut(s)	515
Tth111I	GACNNNGTC	1 cut(s)	36
VpaK11BI	GGWCC	2 cut(s)	32, 502
XapI	RAATTY	1 cut(s)	456
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	1 cut(s)	251
ZrmI	AGTACT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.