Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005217

Physical Location & Seq

Genomic Coordinates Reverse (-)

63711467 .. 63715679

Gene Structure 4213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG433800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1812 bp

ATGGCGGCTGCTTCTTCATCGCTGGCCTTCTTTGGGAGTAATAGCAGAGAAGAAAATCAAAACCAGCTGATGTCGTCGCTACAACAACCATCGCCAGCTTCCTCAACTGCTCCAATTTCTACCACTACACCCACTGCACCTCCTCCAAAGAAAAGAAGAAATCAACCCGGAAATCCAACAGATCCAGATGCGGAGGTCATCGCACTATCTCCCAAGACCTTAATGGCAACAAACAGATTCATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAGAACCTACAGCTCCACAGAAGAGGACACAACCTGCCTTGGAAGTTAAAGCAGAAGACTAACAAAGAACCCAAGCGCAAGGTCTATCTGTGCCCCGAGCCCACCTGCGTCCACCACGACCCATCTCGAGCCCTCGGAGACCTAACCGGCATCAAAAAGCACTTCTCGAGAAAGCACGGCGAGAAAAAGTGGAAGTGCGAGAAGTGCTCCAAGCGGTATGCTGTTCAATCTGATTGGAAGGCTCATTCTAAGACTTGCGGCACTCGAGAGTACCGATGCGACTGTGGTACTCTCTTCTCCAGGCGGGACAGTTTCATCACGCATAGGGCCTTCTGCGATGCACTAGCTCAAGAGAGTGCAAGGCATCCTTCAAGCTTAAGCGCCATGGCTACTAGTTCTCATCTCTATCCAGGAAATAACCAAATGATGAGCTTAGGCCTTTCCCAAATGGGTGGCGGTTCCTCCCTCCCACCTAATAACATGTTGAGGCTAGGGACTAATGGTGCTGGCGGTGCTGCGAAATTTGAGCACCTCATGAATCCTTCCTCATTCGGACAAGCGCAGCCTATACCTAATTCTTCGACTACTTTCTTCAATCAAGGGTTTCAGGATCAGCAACATTCTCTGAATGGACCATATGCTGCTAACAAATCGTTACATGGGCTAATGCAACTTCCTGATCTCCAAAGCAACACTCCTAGTAACAACTCGCCCTCATCAACTACTACTGCTGCCGGTAGTCTCTTTAACCTCGGCTTCTTTTCGAGTAATAATTCTGATCATCATCAGTTTAGTGATGGAAATGGTGGCACCCAAGGGACGACGCTCTTTCCGAATGGTATGGCTGATCATATTGGTTCGGGGCTACAATCCAGCCTCTTCGGGAATTCCTTACAACATGAGAACATGAATGGTGCACATATGTCTGCCACCGCATTGCTTCAGAAAGCCGCTCAAATGGGTTCAACTACAAGCACCGAAAGCTCATCTTTGCTAAGAGGATTAGCCGGGAGTACTTCATCAAGTACAAGAGCAGTAGCAAAATCCATTTCCGGTCGGCAACTGGTCTCTTCTAACTCTACTATCGGTGGTGTCAGCTTTAGCCGCGAGAGTAGTAGCGGTGGTGAACATGAGCAACACATGAGATCACAGCAGCAGCATGTGGAAAATGAAAACCACCATCTTCAAGGATTAATCATGAACTCTCTTACCAATGGAAACAGCTCCGCGGCCTCCATTTTCGGAGCAGCTGGGGATCATCATAACAACTTTGGTACTCATGGGTTTGCCAATGGCAGTACTACTAGGGTTTCTCTGATGGATCAGCAGCAGCACAACAACACAAACTTTAGCAACGTGGATGAGGCGAAATTAACCTTGGATTTCCTTGGCGTTGGAGGGATTGTAAGAAACATGGGTGGTGGTGGTGGTGGTGGATATGAGCACCGTGGCATCAATATGAGCTCTTTAGACCCAGAGTTGAAGTCATCGCAACAGCCAAGTCAACCTTATGGAGGCACTAGTGCACTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008356 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_6 zf-C2H2_jaz

Protein Analysis

603

Amino Acids

64.56

Weight (kDa)

9.22

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-2nd_BIRD-IDD	PF22996	117 - 151	1.5e-22	BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD	PF22995	155 - 179	6.2e-15	BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD	PF22992	182 - 220	8.1e-24	BIRD-IDD transcription factor, fourth C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14580 AT1G14580 AT1G14580 AT1G14580 AT2G02080 AT2G02080 AT2G02080 AT2G02080 AT2G02080 AT2G02080
fragaria_vesca	FvH4_4g36050 FvH4_4g36050 FvH4_4g36050 FvH4_4g36050 FvH4_4g36050 FvH4_4g36050
malus_domestica	MD13G1013000.v1.1
prunus_persica	Prupe.1G341100_v2.0.a1
pyrus_communis	pycom13g01040 pycom16g00920
rosa_chinensis	RchiOBHm_Chr4g0445671
rosa_laevigata	RLG00000005718
rosa_multiflora	Rmu_sc0003637.1_g000020
rosa_roxburghii	Rroxscaffold_5G00386150
rosa_rugosa	Rorug04G0364600
rosa_samantha	Rh4AG425500 Rh4CG452500 Rh4DG433800
rosa_wichuraiana	Rw4G036450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
Acc36I	ACCTGC	2 cut(s)	318, 389
AccB1I	GGYRCC	1 cut(s)	1085
AccBSI	CCGCTC	1 cut(s)	1229
AccII	CGCG	2 cut(s)	1383, 1505
AclWI	GGATC	4 cut(s)	176, 894, 1539, 1605
AcsI	RAATTY	2 cut(s)	797, 1162
AcuI	CTGAAG	1 cut(s)	1202
AfaI	GTAC	6 cut(s)	548, 565, 1291, 1303, 1552, 1576
AfiI	CCNNNNNNNGG	2 cut(s)	33, 1790
AflII	CTTAAG	1 cut(s)	652
AflIII	ACRYGT	1 cut(s)	756
AgsI	TTSAA	6 cut(s)	503, 648, 871, 1242, 1463, 1759
AhlI	ACTAGT	2 cut(s)	668, 1796
AjnI	CCWGG	2 cut(s)	575, 685
AjuI	GAANNNNNNNTTGG	2 cut(s)	1637, 1669
Alw21I	GWGCWC	6 cut(s)	485, 807, 1195, 1722, 1742, 1804
Alw26I	GTCTC	3 cut(s)	408, 1022, 1348
Alw44I	GTGCAC	2 cut(s)	1191, 1800
AlwI	GGATC	4 cut(s)	176, 894, 1539, 1605
Ama87I	CYCGRG	4 cut(s)	371, 402, 442, 540
AoxI	GGCC	4 cut(s)	24, 603, 712, 1506
ApaLI	GTGCAC	2 cut(s)	1191, 1800
ApoI	RAATTY	2 cut(s)	797, 1162
AseI	ATTAAT	1 cut(s)	1469
AspLEI	GCGC	3 cut(s)	354, 659, 838
AspS9I	GGNCC	2 cut(s)	603, 908
AsuC2I	CCSGG	2 cut(s)	168, 1285
AsuHPI	GGTGA	1 cut(s)	1412
AvaI	CYCGRG	4 cut(s)	371, 402, 442, 540
AvaII	GGWCC	1 cut(s)	908
BaeGI	GKGCMC	3 cut(s)	371, 1195, 1804
BanI	GGYRCC	1 cut(s)	1085
BanII	GRGCYC	3 cut(s)	378, 409, 1742
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	6 cut(s)	485, 807, 1195, 1722, 1742, 1804
BbvI	GCAGC	9 cut(s)	778, 850, 904, 994, 1441, 1444, 1535, 1615, 1618
BccI	CCATC	5 cut(s)	97, 406, 1067, 1464, 1588
BceAI	ACGGC	1 cut(s)	469
BciT130I	CCWGG	2 cut(s)	577, 687
BclI	TGATCA	2 cut(s)	1054, 1123
BcnI	CCSGG	2 cut(s)	168, 1285
BcoDI	GTCTC	3 cut(s)	408, 1022, 1348
BcuI	ACTAGT	2 cut(s)	668, 1796
BfaI	CTAG	6 cut(s)	620, 669, 767, 975, 1581, 1797
BfmI	CTRYAG	1 cut(s)	284
BfoI	RGCGCY	1 cut(s)	660
BfrI	CTTAAG	1 cut(s)	652
BfuAI	ACCTGC	2 cut(s)	318, 389
BmcAI	AGTACT	2 cut(s)	1291, 1576
Bme1390I	CCNGG	4 cut(s)	168, 577, 687, 1285
Bme18I	GGWCC	1 cut(s)	908
BmeT110I	CYCGRG	4 cut(s)	371, 402, 442, 540
BmgT120I	GGNCC	2 cut(s)	603, 908
BmiI	GGNNCC	3 cut(s)	266, 736, 1087
BmrFI	CCNGG	4 cut(s)	168, 577, 687, 1285
BmsI	GCATC	6 cut(s)	178, 435, 542, 604, 649, 1737
BpiI	GAAGAC	1 cut(s)	338
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
BpmI	CTGGAG	1 cut(s)	559
Bpu10I	CCTNAGC	1 cut(s)	709
BpuEI	CTTGAG	1 cut(s)	609
BpuMI	CCSGG	2 cut(s)	168, 1285
BsaBI	GATNNNNATC	1 cut(s)	1059
BsaI	GGTCTC	2 cut(s)	408, 1348
BsaJI	CCNNGG	9 cut(s)	314, 409, 660, 1027, 1090, 1503, 1653, 1663, 1723
BsaWI	WCCGGW	1 cut(s)	1328
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 1665, 1695
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 1790
Bse118I	RCCGGY	2 cut(s)	422, 1010
Bse1I	ACTGG	1 cut(s)	1344
Bse3DI	GCAATG	1 cut(s)	1211
Bse8I	GATNNNNATC	1 cut(s)	1059
BseBI	CCWGG	2 cut(s)	577, 687
BseDI	CCNNGG	9 cut(s)	314, 409, 660, 1027, 1090, 1503, 1653, 1663, 1723
BseGI	GGATG	2 cut(s)	640, 1642
BseJI	GATNNNNATC	1 cut(s)	1059
BseLI	CCNNNNNNNGG	2 cut(s)	33, 1790
BseMI	GCAATG	1 cut(s)	1211
BseNI	ACTGG	1 cut(s)	1344
BseRI	GAGGAG	1 cut(s)	132
BseSI	GKGCMC	3 cut(s)	371, 1195, 1804
BseXI	GCAGC	9 cut(s)	778, 850, 904, 994, 1441, 1444, 1535, 1615, 1618
BseYI	CCCAGC	1 cut(s)	1526
BsgI	GTGCAG	1 cut(s)	120
Bsh1236I	CGCG	2 cut(s)	1383, 1505
Bsh1285I	CGRYCG	1 cut(s)	1333
BshFI	GGCC	4 cut(s)	26, 605, 714, 1508
BshNI	GGYRCC	1 cut(s)	1085
BsiEI	CGRYCG	1 cut(s)	1333
BsiHKAI	GWGCWC	6 cut(s)	485, 807, 1195, 1722, 1742, 1804
BsiHKCI	CYCGRG	4 cut(s)	371, 402, 442, 540
BsiSI	CCGG	5 cut(s)	168, 423, 1011, 1284, 1329
BslFI	GGGAC	3 cut(s)	596, 784, 1108
BslI	CCNNNNNNNGG	2 cut(s)	33, 1790
BsmAI	GTCTC	3 cut(s)	408, 1022, 1348
BsmFI	GGGAC	3 cut(s)	596, 784, 1108
BsnI	GGCC	4 cut(s)	26, 605, 714, 1508
Bso31I	GGTCTC	2 cut(s)	408, 1348
BsoBI	CYCGRG	4 cut(s)	371, 402, 442, 540
Bsp1286I	GDGCHC	9 cut(s)	371, 378, 409, 485, 807, 1195, 1722, 1742, 1804
Bsp143I	GATC	8 cut(s)	181, 886, 955, 1054, 1123, 1421, 1531, 1597
Bsp19I	CCATGG	1 cut(s)	660
BspANI	GGCC	4 cut(s)	26, 605, 714, 1508
BspFNI	CGCG	2 cut(s)	1383, 1505
BspHI	TCATGA	2 cut(s)	810, 1473
BspLI	GGNNCC	3 cut(s)	266, 736, 1087
BspMI	ACCTGC	2 cut(s)	318, 389
BspPI	GGATC	4 cut(s)	176, 894, 1539, 1605
BspT107I	GGYRCC	1 cut(s)	1085
BspTI	CTTAAG	1 cut(s)	652
BspTNI	GGTCTC	2 cut(s)	408, 1348
BsrBI	CCGCTC	1 cut(s)	1229
BsrDI	GCAATG	1 cut(s)	1211
BsrFI	RCCGGY	2 cut(s)	422, 1010
BsrI	ACTGG	1 cut(s)	1344
BssAI	RCCGGY	2 cut(s)	422, 1010
BssECI	CCNNGG	9 cut(s)	314, 409, 660, 1027, 1090, 1503, 1653, 1663, 1723
BssMI	GATC	8 cut(s)	181, 886, 955, 1054, 1123, 1421, 1531, 1597
BssT1I	CCWWGG	5 cut(s)	314, 660, 1090, 1653, 1663
Bst2UI	CCWGG	2 cut(s)	577, 687
Bst4CI	ACNGT	3 cut(s)	560, 587, 1724
Bst6I	CTCTTC	4 cut(s)	292, 575, 1160, 1351
BstAFI	CTTAAG	1 cut(s)	652
BstC8I	GCNNGC	3 cut(s)	24, 96, 784
BstDEI	CTNAG	3 cut(s)	525, 709, 1271
BstDSI	CCRYGG	3 cut(s)	660, 1503, 1723
BstENI	CCTNNNNNAGG	1 cut(s)	1788
BstF5I	GGATG	2 cut(s)	640, 1642
BstFNI	CGCG	2 cut(s)	1383, 1505
BstH2I	RGCGCY	1 cut(s)	660
BstHHI	GCGC	3 cut(s)	354, 659, 838
BstKTI	GATC	8 cut(s)	184, 889, 958, 1057, 1126, 1424, 1534, 1600
BstMAI	GTCTC	3 cut(s)	408, 1022, 1348
BstMBI	GATC	8 cut(s)	181, 886, 955, 1054, 1123, 1421, 1531, 1597
BstMCI	CGRYCG	1 cut(s)	1333
BstMWI	GCNNNNNNNGC	4 cut(s)	480, 788, 1257, 1380
BstNI	CCWGG	2 cut(s)	577, 687
BstNSI	RCATGY	2 cut(s)	760, 1439
BstSCI	CCNGG	4 cut(s)	166, 575, 685, 1283
BstSFI	CTRYAG	1 cut(s)	284
BstSLI	GKGCMC	3 cut(s)	371, 1195, 1804
BstUI	CGCG	2 cut(s)	1383, 1505
BstV1I	GCAGC	9 cut(s)	778, 850, 904, 994, 1441, 1444, 1535, 1615, 1618
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	728
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	4 cut(s)	26, 605, 714, 1508
BtgI	CCRYGG	3 cut(s)	660, 1503, 1723
BtgZI	GCGATG	5 cut(s)	3, 75, 184, 627, 1749
BtsCI	GGATG	2 cut(s)	640, 1642
BtsI	GCAGTG	2 cut(s)	132, 1802
BtsIMutI	CAGTG	2 cut(s)	132, 1802
BveI	ACCTGC	2 cut(s)	318, 389
Cac8I	GCNNGC	3 cut(s)	24, 96, 784
CciI	TCATGA	2 cut(s)	810, 1473
CfoI	GCGC	3 cut(s)	354, 659, 838
Cfr10I	RCCGGY	2 cut(s)	422, 1010
Cfr13I	GGNCC	2 cut(s)	603, 908
Cfr42I	CCGCGG	1 cut(s)	1506
CseI	GACGC	2 cut(s)	373, 1108
Csp6I	GTAC	6 cut(s)	547, 564, 1290, 1302, 1551, 1575
CviQI	GTAC	6 cut(s)	547, 564, 1290, 1302, 1551, 1575
DdeI	CTNAG	3 cut(s)	525, 709, 1271
DpnI	GATC	8 cut(s)	183, 888, 957, 1056, 1125, 1423, 1533, 1599
DpnII	GATC	8 cut(s)	181, 886, 955, 1054, 1123, 1421, 1531, 1597
Eam1104I	CTCTTC	4 cut(s)	292, 575, 1160, 1351
EarI	CTCTTC	4 cut(s)	292, 575, 1160, 1351
Ecl136II	GAGCTC	1 cut(s)	1740
Eco130I	CCWWGG	5 cut(s)	314, 660, 1090, 1653, 1663
Eco147I	AGGCCT	1 cut(s)	714
Eco24I	GRGCYC	3 cut(s)	378, 409, 1742
Eco31I	GGTCTC	2 cut(s)	408, 1348
Eco47I	GGWCC	1 cut(s)	908
Eco53kI	GAGCTC	1 cut(s)	1740
Eco57I	CTGAAG	1 cut(s)	1202
Eco88I	CYCGRG	4 cut(s)	371, 402, 442, 540
EcoICRI	GAGCTC	1 cut(s)	1740
EcoNI	CCTNNNNNAGG	1 cut(s)	1788
EcoO109I	RGGNCCY	1 cut(s)	603
EcoRI	GAATTC	1 cut(s)	1162
EcoRII	CCWGG	2 cut(s)	575, 685
EcoT14I	CCWWGG	5 cut(s)	314, 660, 1090, 1653, 1663
EcoT38I	GRGCYC	3 cut(s)	378, 409, 1742
ErhI	CCWWGG	5 cut(s)	314, 660, 1090, 1653, 1663
FalI	AAGNNNNNCTT	6 cut(s)	628, 660, 1249, 1281, 1768, 1800
FaqI	GGGAC	3 cut(s)	596, 784, 1108
FauI	CCCGC	1 cut(s)	573
FauNDI	CATATG	3 cut(s)	242, 913, 1197
FbaI	TGATCA	2 cut(s)	1054, 1123
FokI	GGATG	2 cut(s)	627, 1649
FriOI	GRGCYC	3 cut(s)	378, 409, 1742
FspBI	CTAG	6 cut(s)	620, 669, 767, 975, 1581, 1797
GlaI	GCGC	3 cut(s)	353, 658, 837
GsaI	CCCAGC	1 cut(s)	1530
GsuI	CTGGAG	1 cut(s)	559
HaeII	RGCGCY	1 cut(s)	660
HaeIII	GGCC	4 cut(s)	26, 605, 714, 1508
HapII	CCGG	5 cut(s)	168, 423, 1011, 1284, 1329
HgaI	GACGC	2 cut(s)	373, 1108
HhaI	GCGC	3 cut(s)	354, 659, 838
Hin6I	GCGC	3 cut(s)	352, 657, 836
HinP1I	GCGC	3 cut(s)	352, 657, 836
HincII	GTYRAC	1 cut(s)	1781
HindII	GTYRAC	1 cut(s)	1781
HindIII	AAGCTT	1 cut(s)	649
HinfI	GANTC	2 cut(s)	237, 814
HpaII	CCGG	5 cut(s)	168, 423, 1011, 1284, 1329
HphI	GGTGA	1 cut(s)	1412
Hpy166II	GTNNAC	5 cut(s)	388, 1193, 1403, 1781, 1802
Hpy188I	TCNGA	9 cut(s)	413, 508, 830, 903, 1054, 1110, 1221, 1520, 1593
Hpy8I	GTNNAC	5 cut(s)	388, 1193, 1403, 1781, 1802
Hpy99I	CGWCG	2 cut(s)	79, 1102
HpyAV	CCTTC	5 cut(s)	37, 508, 616, 654, 828
HpyCH4III	ACNGT	3 cut(s)	560, 587, 1724
HpyCH4IV	ACGT	1 cut(s)	1632
HpyCH4V	TGCA	8 cut(s)	137, 255, 617, 635, 946, 1193, 1802, 1807
HpyF10VI	GCNNNNNNNGC	4 cut(s)	480, 788, 1257, 1380
HpyF3I	CTNAG	3 cut(s)	525, 709, 1271
HpySE526I	ACGT	1 cut(s)	1632
HspAI	GCGC	3 cut(s)	352, 657, 836
Ksp22I	TGATCA	2 cut(s)	1054, 1123
KspI	CCGCGG	1 cut(s)	1506
Kzo9I	GATC	8 cut(s)	181, 886, 955, 1054, 1123, 1421, 1531, 1597
LmnI	GCTCC	6 cut(s)	115, 274, 294, 488, 1505, 1520
Lsp1109I	GCAGC	9 cut(s)	778, 850, 904, 994, 1441, 1444, 1535, 1615, 1618
LweI	GCATC	6 cut(s)	178, 435, 542, 604, 649, 1737
MaeI	CTAG	6 cut(s)	620, 669, 767, 975, 1581, 1797
MaeII	ACGT	1 cut(s)	1632
MaeIII	GTNAC	2 cut(s)	930, 977
MalI	GATC	8 cut(s)	183, 888, 957, 1056, 1125, 1423, 1533, 1599
MbiI	CCGCTC	1 cut(s)	1229
MboI	GATC	8 cut(s)	181, 886, 955, 1054, 1123, 1421, 1531, 1597
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	9 cut(s)	371, 378, 409, 485, 807, 1195, 1722, 1742, 1804
MluCI	AATT	6 cut(s)	114, 797, 850, 1048, 1162, 1646
MmeI	TCCRAC	2 cut(s)	200, 1651
MseI	TTAA	6 cut(s)	221, 323, 653, 1023, 1469, 1649
MslI	CAYNNNNRTG	2 cut(s)	1733, 1807
MspA1I	CMGCKG	3 cut(s)	67, 1505, 1526
MspCI	CTTAAG	1 cut(s)	652
MspI	CCGG	5 cut(s)	168, 423, 1011, 1284, 1329
MspR9I	CCNGG	4 cut(s)	168, 577, 687, 1285
MvaI	CCWGG	2 cut(s)	577, 687
MvnI	CGCG	2 cut(s)	1383, 1505
MwoI	GCNNNNNNNGC	4 cut(s)	480, 788, 1257, 1380
NciI	CCSGG	2 cut(s)	168, 1285
NcoI	CCATGG	1 cut(s)	660
NdeI	CATATG	3 cut(s)	242, 913, 1197
NdeII	GATC	8 cut(s)	181, 886, 955, 1054, 1123, 1421, 1531, 1597
NlaIV	GGNNCC	3 cut(s)	266, 736, 1087
NmeAIII	GCCGAG	1 cut(s)	1008
NspI	RCATGY	2 cut(s)	760, 1439
PaeR7I	CTCGAG	3 cut(s)	402, 442, 540
PagI	TCATGA	2 cut(s)	810, 1473
PaqCI	CACCTGC	1 cut(s)	389
PceI	AGGCCT	1 cut(s)	714
PciI	ACATGT	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	2 cut(s)	547, 1106
PfeI	GAWTC	2 cut(s)	237, 814
PfoI	TCCNGGA	1 cut(s)	685
PscI	ACATGT	1 cut(s)	756
PshBI	ATTAAT	1 cut(s)	1469
Psp124BI	GAGCTC	1 cut(s)	1742
Psp6I	CCWGG	2 cut(s)	575, 685
PspFI	CCCAGC	1 cut(s)	1526
PspGI	CCWGG	2 cut(s)	575, 685
PspN4I	GGNNCC	3 cut(s)	266, 736, 1087
PspPI	GGNCC	2 cut(s)	603, 908
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	2 cut(s)	67, 1526
RsaI	GTAC	6 cut(s)	548, 565, 1291, 1303, 1552, 1576
RsaNI	GTAC	6 cut(s)	547, 564, 1290, 1302, 1551, 1575
RseI	CAYNNNNRTG	2 cut(s)	1733, 1807
SacI	GAGCTC	1 cut(s)	1742
SacII	CCGCGG	1 cut(s)	1506
SaqAI	TTAA	6 cut(s)	221, 323, 653, 1023, 1469, 1649
Sau3AI	GATC	8 cut(s)	181, 886, 955, 1054, 1123, 1421, 1531, 1597
Sau96I	GGNCC	2 cut(s)	603, 908
ScaI	AGTACT	2 cut(s)	1291, 1576
ScrFI	CCNGG	4 cut(s)	168, 577, 687, 1285
SduI	GDGCHC	9 cut(s)	371, 378, 409, 485, 807, 1195, 1722, 1742, 1804
SfaNI	GCATC	6 cut(s)	178, 435, 542, 604, 649, 1737
SfcI	CTRYAG	1 cut(s)	284
Sfr274I	CTCGAG	3 cut(s)	402, 442, 540
Sfr303I	CCGCGG	1 cut(s)	1506
SgrBI	CCGCGG	1 cut(s)	1506
SinI	GGWCC	1 cut(s)	908
SlaI	CTCGAG	3 cut(s)	402, 442, 540
SmiMI	CAYNNNNRTG	2 cut(s)	1733, 1807
SmlI	CTYRAG	5 cut(s)	402, 442, 540, 624, 652
SmoI	CTYRAG	5 cut(s)	402, 442, 540, 624, 652
SpeI	ACTAGT	2 cut(s)	668, 1796
Sse9I	AATT	6 cut(s)	114, 797, 850, 1048, 1162, 1646
SseBI	AGGCCT	1 cut(s)	714
SspMI	CTAG	6 cut(s)	620, 669, 767, 975, 1581, 1797
SstI	GAGCTC	1 cut(s)	1742
StuI	AGGCCT	1 cut(s)	714
StyD4I	CCNGG	4 cut(s)	166, 575, 685, 1283
StyI	CCWWGG	5 cut(s)	314, 660, 1090, 1653, 1663
TaaI	ACNGT	3 cut(s)	560, 587, 1724
TaiI	ACGT	1 cut(s)	1635
TaqI	TCGA	5 cut(s)	403, 443, 541, 857, 1040
TasI	AATT	6 cut(s)	114, 797, 850, 1048, 1162, 1646
TatI	WGTACW	3 cut(s)	1289, 1301, 1574
TauI	GCSGC	5 cut(s)	8, 537, 1229, 1383, 1508
TfiI	GAWTC	2 cut(s)	237, 814
Tru1I	TTAA	6 cut(s)	221, 323, 653, 1023, 1469, 1649
Tru9I	TTAA	6 cut(s)	221, 323, 653, 1023, 1469, 1649
TscAI	CASTG	2 cut(s)	139, 1809
TspDTI	ATGAA	8 cut(s)	6, 229, 580, 827, 1199, 1284, 1461, 1490
TspRI	CASTG	2 cut(s)	139, 1809
Vha464I	CTTAAG	1 cut(s)	652
VneI	GTGCAC	2 cut(s)	1191, 1800
VpaK11BI	GGWCC	1 cut(s)	908
VspI	ATTAAT	1 cut(s)	1469
XagI	CCTNNNNNAGG	1 cut(s)	1788
XapI	RAATTY	2 cut(s)	797, 1162
XceI	RCATGY	2 cut(s)	760, 1439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XhoI	CTCGAG	3 cut(s)	402, 442, 540
XspI	CTAG	6 cut(s)	620, 669, 767, 975, 1581, 1797
ZrmI	AGTACT	2 cut(s)	1291, 1576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.