Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007212

Physical Location & Seq

Genomic Coordinates Reverse (-)

864997 .. 868292

Gene Structure 3296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

ATGCGACGATCTCATGCCCGTTCTAGGGTGAAGAATAGTAGTAGTAGTAAATCCGATATGGATCCGATTAAGTTCCAGATCCGTTCTGGGAACCGAGCACCGTCTTCTTCATCGACCTATACGCTAACAAAACCGAATTCGAAACACGCGAAATCGAATCTCTTGTTAACAGTTGGTTCTATATCTGTAGTGTTGGGGGTTCTCTTTCTTTGCTATTCAATTTTGTTCTCCGGCGGTAATCTGAGAGGATCGCTTCGTTATAGCGTCGTGATCGACGGCGGAAGTACAGGGACACGAATCCATGTGTTTGGGTACCGGATTGAGTCGGGTAAACCGGTTTTTGAATTCAGAGGAGCGAATTACGCTAGTTTGAAGTTGCATCCGGGTTTATCGGCGTTTGCTGATGATCCTGATGGAGCGAGTGTGTCATTGACGGAGCTGGTTGAGTTTGCGAAAGGGAGAGTTCCGAAAGGAATGTGGATTGAGACTGAAGTTAGGTTAATGGCGACGGCGGGAATGAGATTGCTTGAATTACCTGTTCAGGAAAAGATTCTGGGAGTTGCAAGAAGAGTTCTTAAATCTTCTGGGTTCTTGTTTCGAGATGAATGGGCTTCTGTTATCTCTGGATCTGACGAGGGTGTATATGCTTGGGTTGTTGCAAACTTTGCTCTCGGTTCACTTGGAGGTGATCCTCTTAAAACAACCGGAATTGTTGAACTTGGCGGGGCTTCTGCTCAGGTGACATTTGTGTCTAGTGAGCCAATGCCTCCTGAGTTCTCACGTACAATATCATTTGGAAATGTCACATACAATCTCTACAGTCACAGCTTCCTTCATTTTGGGCAGAATGCTGCACATGATAAGTTATGGGGTTCACTTCTCTCAAGAGACCATAATTCAGCTGTGGAACCTACACGGGAAAAAATATTTACAGACCCTTGTGCTCCAAAAGGGTATAACCTCGACGCAAACACACAAAAGCATTTGTCTGGACTTTTAGCTGAAGAAAGCAGACTCTCAGATTCTTTTCAAGCTGGGGGTAATTACTCACAGTGTCGATCTGCTGCACTAACAATCTTGCAAGATGGAAATGAGAAATGCTCGTATCAGCATTGTTCTATTGGATCAACTTTCACGCCTAAGCTTCGAGGAAGATTTTTAGCGACAGAAAACTTCTTTTACACCTCTAAGTTCTTTGGGTTGGGAGAAAAAGCGTGGCTATCTAATATGATTTCAGCCGGAGAGAGATTCTGTGGAGAAGATTGGTCAAAGTTGAGAGTAAAAGACCCATCACTCCATGAAGAGGATCTTCTTCGGTATTGTTTCTCATCTGCATATATTGTGTCATTGCTTCACGATACCCTTGGCATTCCTCTTGATGATGAAAGAATCGGATATGCGAATCAAGCAGGAGACATACCGCTCGATTGGGCTTTAGGTGCATTCATTCAACAGACTGCAACAGAGACCTCTCAACATGCAGCCTCTGGTAATCTCCATTGGTTCCATGCTCTTTTCAGTAATCACCCGAAGACGCTTCACTATCTCATCGGGATACCGATCCTTATGACAGTTTTGGTATATTTGGTAACTAAGTGGAGAAAACCGCAGCTGAAAACGATTTACGACCTTGAGAAAGGTCGGTACATAGTGACTCGAATTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007155 GO:0007275 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009611 GO:0009653 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0017111 GO:0019439 GO:0022414 GO:0022607 GO:0022610 GO:0030198 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0034641 GO:0034655 GO:0034656 GO:0042060 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045229 GO:0046483 GO:0046700 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050817 GO:0050878 GO:0050896 GO:0055086 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:0090567 GO:0099402 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko05169 map00230 map00240 map05169

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

555

Amino Acids

61.29

Weight (kDa)

9.02

Isoelectric Point (pI)

29.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDA1_CD39	PF01150	85 - 490	9e-80	GDA1/CD39 (nucleoside phosphatase) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02970
fragaria_vesca	FvH4_4g31330 FvH4_4g31330 FvH4_4g31330
malus_domestica	MD13G1072000.v1.1 MD16G1072600.v1.1
prunus_persica	Prupe.1G275000_v2.0.a1 Prupe.1G275000_v2.0.a1 Prupe.1G275000_v2.0.a1 Prupe.1G275000_v2.0.a1
pyrus_communis	pycom13g06460 pycom16g06290
rosa_chinensis	RchiOBHm_Chr4g0439831
rosa_laevigata	RLG00000006236
rosa_multiflora	Rmu_co8364541.1_g000001 Rmu_sc0010226.1_g000001 Rmu_ssc0000029.1_g000002
rosa_roxburghii	Rroxscaffold_5G00380730
rosa_rugosa	Rorug04G0321600 Rorug04G0321700
rosa_samantha	Rh4AG372500 Rh4BG384900 Rh4CG399300 Rh4DG379100
rosa_wichuraiana	Rw4G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	748
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	312
AccBSI	CCGCTC	1 cut(s)	1423
AccII	CGCG	1 cut(s)	149
AciI	CCGC	6 cut(s)	234, 279, 512, 723, 1421, 1607
AcsI	RAATTY	2 cut(s)	136, 344
AcuI	CTGAAG	2 cut(s)	510, 1023
AfaI	GTAC	4 cut(s)	286, 314, 784, 1646
AfiI	CCNNNNNNNGG	3 cut(s)	24, 25, 1303
AgeI	ACCGGT	1 cut(s)	334
AgsI	TTSAA	7 cut(s)	219, 344, 373, 530, 716, 1031, 1451
AluBI	AGCT	7 cut(s)	439, 828, 902, 1001, 1034, 1144, 1612
AluI	AGCT	7 cut(s)	439, 828, 902, 1001, 1034, 1144, 1612
Alw21I	GWGCWC	2 cut(s)	100, 946
Alw26I	GTCTC	4 cut(s)	479, 882, 1407, 1460
AlwNI	CAGNNNCTG	1 cut(s)	1487
ApeKI	GCWGC	4 cut(s)	851, 1064, 1481, 1609
ApoI	RAATTY	2 cut(s)	136, 344
AsiGI	ACCGGT	1 cut(s)	334
Asp700I	GAANNNNTTC	1 cut(s)	549
Asp718I	GGTACC	1 cut(s)	312
AsuC2I	CCSGG	1 cut(s)	384
AsuHPI	GGTGA	4 cut(s)	40, 698, 751, 1517
AsuII	TTCGAA	1 cut(s)	140
BamHI	GGATCC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	312
BbsI	GAAGAC	2 cut(s)	96, 1538
Bbv12I	GWGCWC	2 cut(s)	100, 946
BbvI	GCAGC	4 cut(s)	838, 1051, 1493, 1621
BccI	CCATC	3 cut(s)	407, 1079, 1297
BceAI	ACGGC	2 cut(s)	292, 525
BciVI	GTATCC	1 cut(s)	1548
BcnI	CCSGG	1 cut(s)	384
BcoDI	GTCTC	4 cut(s)	479, 882, 1407, 1460
BfaI	CTAG	3 cut(s)	24, 366, 753
BfmI	CTRYAG	2 cut(s)	186, 817
BfuI	GTATCC	1 cut(s)	1548
BisI	GCNGC	4 cut(s)	852, 1065, 1482, 1610
BlsI	GCNGC	4 cut(s)	853, 1066, 1483, 1611
Bme1390I	CCNGG	1 cut(s)	384
BmiI	GGNNCC	5 cut(s)	63, 92, 314, 909, 1505
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	388
BpiI	GAAGAC	2 cut(s)	96, 1538
BplI	GAGNNNNNCTC	2 cut(s)	1085, 1117
Bpu10I	CCTNAGC	2 cut(s)	735, 1140
Bpu14I	TTCGAA	1 cut(s)	140
BpuEI	CTTGAG	2 cut(s)	868, 1652
BpuMI	CCSGG	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	782
BsaBI	GATNNNNATC	2 cut(s)	60, 1559
BsaI	GGTCTC	2 cut(s)	882, 1460
BsaJI	CCNNGG	1 cut(s)	1363
BsaWI	WCCGGW	3 cut(s)	315, 334, 704
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 25, 1303
Bse118I	RCCGGY	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	1346
Bse8I	GATNNNNATC	2 cut(s)	60, 1559
BseDI	CCNNGG	1 cut(s)	1363
BseGI	GGATG	1 cut(s)	379
BseJI	GATNNNNATC	2 cut(s)	60, 1559
BseLI	CCNNNNNNNGG	3 cut(s)	24, 25, 1303
BseMI	GCAATG	1 cut(s)	1346
BseMII	CTCAG	4 cut(s)	233, 749, 762, 1032
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	4 cut(s)	838, 1051, 1493, 1621
BseYI	CCCAGC	1 cut(s)	1034
BsgI	GTGCAG	2 cut(s)	837, 1050
Bsh1236I	CGCG	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	312
BshTI	ACCGGT	1 cut(s)	334
BsiHKAI	GWGCWC	2 cut(s)	100, 946
BsiSI	CCGG	6 cut(s)	231, 316, 335, 383, 705, 1239
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	3 cut(s)	24, 25, 1303
BsmAI	GTCTC	4 cut(s)	479, 882, 1407, 1460
BsmFI	GGGAC	1 cut(s)	304
BsmI	GAATGC	3 cut(s)	853, 1368, 1442
Bso31I	GGTCTC	2 cut(s)	882, 1460
Bsp119I	TTCGAA	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	100, 946
BspACI	CCGC	6 cut(s)	234, 279, 512, 723, 1421, 1607
BspCNI	CTCAG	4 cut(s)	234, 748, 763, 1031
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	5 cut(s)	63, 92, 314, 909, 1505
BspT104I	TTCGAA	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	312
BspTNI	GGTCTC	2 cut(s)	882, 1460
BsrBI	CCGCTC	1 cut(s)	1423
BsrDI	GCAATG	1 cut(s)	1346
BsrFI	RCCGGY	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	1363
BssT1I	CCWWGG	1 cut(s)	1363
Bst4CI	ACNGT	5 cut(s)	102, 172, 821, 1053, 1573
Bst6I	CTCTTC	2 cut(s)	562, 1296
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstBAI	YACGTR	1 cut(s)	782
BstBI	TTCGAA	1 cut(s)	140
BstDEI	CTNAG	7 cut(s)	242, 735, 771, 1018, 1140, 1188, 1593
BstF5I	GGATG	1 cut(s)	379
BstFNI	CGCG	1 cut(s)	149
BstMAI	GTCTC	4 cut(s)	479, 882, 1407, 1460
BstMWI	GCNNNNNNNGC	4 cut(s)	362, 665, 1406, 1439
BstNSI	RCATGY	1 cut(s)	1481
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	2 cut(s)	186, 817
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	4 cut(s)	838, 1051, 1493, 1621
BstV2I	GAAGAC	2 cut(s)	96, 1538
BstX2I	RGATCY	4 cut(s)	61, 78, 626, 1306
BstXI	CCANNNNNNTGG	1 cut(s)	308
BstYI	RGATCY	4 cut(s)	61, 78, 626, 1306
BsuI	GTATCC	1 cut(s)	1548
BtsCI	GGATG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	1058
CaiI	CAGNNNCTG	1 cut(s)	1487
Cfr10I	RCCGGY	1 cut(s)	334
CseI	GACGC	3 cut(s)	253, 974, 1543
Csp6I	GTAC	4 cut(s)	285, 313, 783, 1645
CspAI	ACCGGT	1 cut(s)	334
CviAII	CATG	6 cut(s)	14, 302, 857, 1298, 1478, 1508
CviQI	GTAC	4 cut(s)	285, 313, 783, 1645
DdeI	CTNAG	7 cut(s)	242, 735, 771, 1018, 1140, 1188, 1593
DrdI	GACNNNNNNGTC	1 cut(s)	748
DseDI	GACNNNNNNGTC	1 cut(s)	748
Eam1104I	CTCTTC	2 cut(s)	562, 1296
EarI	CTCTTC	2 cut(s)	562, 1296
EciI	GGCGGA	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	1363
Eco31I	GGTCTC	2 cut(s)	882, 1460
Eco57I	CTGAAG	2 cut(s)	510, 1023
EcoRI	GAATTC	2 cut(s)	136, 344
EcoT14I	CCWWGG	1 cut(s)	1363
ErhI	CCWWGG	1 cut(s)	1363
FaeI	CATG	6 cut(s)	17, 305, 860, 1301, 1481, 1511
FalI	AAGNNNNNCTT	2 cut(s)	1293, 1325
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	6 cut(s)	13, 301, 856, 1297, 1477, 1507
FauI	CCCGC	2 cut(s)	505, 716
Fnu4HI	GCNGC	4 cut(s)	852, 1065, 1482, 1610
FokI	GGATG	1 cut(s)	366
Fsp4HI	GCNGC	4 cut(s)	852, 1065, 1482, 1610
FspBI	CTAG	3 cut(s)	24, 366, 753
GluI	GCNGC	4 cut(s)	852, 1065, 1482, 1610
GsaI	CCCAGC	1 cut(s)	1038
HapII	CCGG	6 cut(s)	231, 316, 335, 383, 705, 1239
HgaI	GACGC	3 cut(s)	253, 974, 1543
Hin1II	CATG	6 cut(s)	17, 305, 860, 1301, 1481, 1511
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	1142
HpaI	GTTAAC	1 cut(s)	168
HpaII	CCGG	6 cut(s)	231, 316, 335, 383, 705, 1239
HphI	GGTGA	4 cut(s)	40, 698, 751, 1517
Hpy166II	GTNNAC	4 cut(s)	168, 332, 677, 875
Hpy188I	TCNGA	8 cut(s)	55, 66, 243, 350, 468, 631, 1021, 1394
Hpy8I	GTNNAC	4 cut(s)	168, 332, 677, 875
Hpy99I	CGWCG	5 cut(s)	9, 269, 278, 511, 968
HpyAV	CCTTC	1 cut(s)	842
HpyCH4III	ACNGT	5 cut(s)	102, 172, 821, 1053, 1573
HpyCH4IV	ACGT	1 cut(s)	781
HpyF10VI	GCNNNNNNNGC	4 cut(s)	362, 665, 1406, 1439
HpyF3I	CTNAG	7 cut(s)	242, 735, 771, 1018, 1140, 1188, 1593
HpySE526I	ACGT	1 cut(s)	781
Hsp92II	CATG	6 cut(s)	17, 305, 860, 1301, 1481, 1511
KpnI	GGTACC	1 cut(s)	316
KspAI	GTTAAC	1 cut(s)	168
LmnI	GCTCC	4 cut(s)	353, 416, 436, 949
Lsp1109I	GCAGC	4 cut(s)	838, 1051, 1493, 1621
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	3 cut(s)	24, 366, 753
MaeII	ACGT	1 cut(s)	781
MaeIII	GTNAC	5 cut(s)	739, 802, 821, 1588, 1651
MbiI	CCGCTC	1 cut(s)	1423
MflI	RGATCY	4 cut(s)	61, 78, 626, 1306
MhlI	GDGCHC	2 cut(s)	100, 946
MluCI	AATT	9 cut(s)	136, 219, 344, 358, 530, 708, 895, 1042, 1659
MlyI	GAGTC	3 cut(s)	332, 1008, 1648
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	5 cut(s)	69, 167, 500, 576, 696
MspA1I	CMGCKG	2 cut(s)	902, 1612
MspI	CCGG	6 cut(s)	231, 316, 335, 383, 705, 1239
MspR9I	CCNGG	1 cut(s)	384
Mva1269I	GAATGC	3 cut(s)	853, 1368, 1442
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	4 cut(s)	362, 665, 1406, 1439
NciI	CCSGG	1 cut(s)	384
NlaIII	CATG	6 cut(s)	17, 305, 860, 1301, 1481, 1511
NlaIV	GGNNCC	5 cut(s)	63, 92, 314, 909, 1505
NmuCI	GTSAC	4 cut(s)	739, 802, 821, 1651
NspI	RCATGY	1 cut(s)	1481
NspV	TTCGAA	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PctI	GAATGC	3 cut(s)	853, 1368, 1442
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	7 cut(s)	157, 297, 550, 1022, 1248, 1389, 1402
PinAI	ACCGGT	1 cut(s)	334
PkrI	GCNGC	4 cut(s)	853, 1066, 1483, 1611
PleI	GAGTC	3 cut(s)	331, 1008, 1648
PpsI	GAGTC	3 cut(s)	331, 1008, 1648
Ppu21I	YACGTR	1 cut(s)	782
PspFI	CCCAGC	1 cut(s)	1034
PspN4I	GGNNCC	5 cut(s)	63, 92, 314, 909, 1505
PstNI	CAGNNNCTG	1 cut(s)	1487
PsuI	RGATCY	4 cut(s)	61, 78, 626, 1306
PvuII	CAGCTG	2 cut(s)	902, 1612
RsaI	GTAC	4 cut(s)	286, 314, 784, 1646
RsaNI	GTAC	4 cut(s)	285, 313, 783, 1645
SaqAI	TTAA	5 cut(s)	69, 167, 500, 576, 696
SatI	GCNGC	4 cut(s)	852, 1065, 1482, 1610
SchI	GAGTC	3 cut(s)	332, 1008, 1648
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	2 cut(s)	100, 946
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	2 cut(s)	186, 817
SfuI	TTCGAA	1 cut(s)	140
SmlI	CTYRAG	2 cut(s)	883, 1631
SmoI	CTYRAG	2 cut(s)	883, 1631
Sse9I	AATT	9 cut(s)	136, 219, 344, 358, 530, 708, 895, 1042, 1659
SsiI	CCGC	6 cut(s)	234, 279, 512, 723, 1421, 1607
SspI	AATATT	1 cut(s)	927
SspMI	CTAG	3 cut(s)	24, 366, 753
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	1363
TaaI	ACNGT	5 cut(s)	102, 172, 821, 1053, 1573
TaiI	ACGT	1 cut(s)	784
TasI	AATT	9 cut(s)	136, 219, 344, 358, 530, 708, 895, 1042, 1659
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	7 cut(s)	157, 297, 550, 1022, 1248, 1389, 1402
Tru1I	TTAA	5 cut(s)	69, 167, 500, 576, 696
Tru9I	TTAA	5 cut(s)	69, 167, 500, 576, 696
TscAI	CASTG	1 cut(s)	1058
TseFI	GTSAC	4 cut(s)	739, 802, 821, 1651
TseI	GCWGC	4 cut(s)	851, 1064, 1481, 1609
Tsp45I	GTSAC	4 cut(s)	739, 802, 821, 1651
TspDTI	ATGAA	6 cut(s)	99, 618, 824, 1314, 1398, 1435
TspGWI	ACGGA	2 cut(s)	71, 449
TspRI	CASTG	1 cut(s)	1058
XapI	RAATTY	2 cut(s)	136, 344
XceI	RCATGY	1 cut(s)	1481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	3 cut(s)	24, 366, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.