Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8364541.1

Orthogroup ID

OG0007212

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1088

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8364541.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 700 bp

atgcgacgactgcacgcccgtaaaggggacaccagttctaaacctaccgacgacgatatggatccggtcaagctccaaatccggcccagcacccgatccaatctcttctcccgcagccccaagcagagcaccagatcaagcttcgtaatcctcgcctccgtcaccatcgccaccgctttcgtcctctgctatctcctcttcttcaccagaagctccagaaattcgaagcgctacgggattgtgatcgacggcggcagtacgggcacccgaatccacgtgttcgggtacggagtcgacgccgccaattccgccgtgttcgacttcggcaaggacgggttggcgtcgctgcgggtcaacccggggctgtcgtcgtttgcggaggatccgaaagctgcgggcgggtcgttgaaggagcttattgagtttgccaaggggagggttccgaagcagcagtgggggaacacggaggttcggcttatggccacggcgggcctccggctgctggatttggatgttcagagtcggattctggagtcttgcagaaaggtgttgaggagctccgggtttaagtttcaggacgagtgggcttcagtcattacaggttctgacgaaggactatatgcgtgggttgttgcaaaccatgcccttggaactcttggtggtgatcctctgaagacaattgggattattgaacttggcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007155 GO:0007275 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009611 GO:0009653 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0017111 GO:0019439 GO:0022414 GO:0022607 GO:0022610 GO:0030198 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0034641 GO:0034655 GO:0034656 GO:0042060 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045229 GO:0046483 GO:0046700 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050817 GO:0050878 GO:0050896 GO:0055086 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:0090567 GO:0099402 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko05169 map00230 map00240 map05169

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

233

Amino Acids

25.32

Weight (kDa)

9.65

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02970
fragaria_vesca	FvH4_4g31330 FvH4_4g31330 FvH4_4g31330
malus_domestica	MD13G1072000.v1.1 MD16G1072600.v1.1
prunus_persica	Prupe.1G275000_v2.0.a1 Prupe.1G275000_v2.0.a1 Prupe.1G275000_v2.0.a1 Prupe.1G275000_v2.0.a1
pyrus_communis	pycom13g06460 pycom16g06290
rosa_chinensis	RchiOBHm_Chr4g0439831
rosa_laevigata	RLG00000006236
rosa_multiflora	Rmu_co8364541.1_g000001 Rmu_sc0010226.1_g000001 Rmu_ssc0000029.1_g000002
rosa_roxburghii	Rroxscaffold_5G00380730
rosa_rugosa	Rorug04G0321600 Rorug04G0321700
rosa_samantha	Rh4AG372500 Rh4BG384900 Rh4CG399300 Rh4DG379100
rosa_wichuraiana	Rw4G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	294
AclWI	GGATC	6 cut(s)	56, 69, 90, 377, 390, 659
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	2 cut(s)	573, 692
AcvI	CACGTG	1 cut(s)	277
AcyI	GRCGYC	2 cut(s)	297, 341
AfaI	GTAC	2 cut(s)	259, 287
AfeI	AGCGCT	1 cut(s)	230
AfiI	CCNNNNNNNGG	4 cut(s)	24, 25, 435, 502
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	409, 692
AluBI	AGCT	6 cut(s)	73, 141, 213, 392, 415, 558
AluI	AGCT	6 cut(s)	73, 141, 213, 392, 415, 558
Alw21I	GWGCWC	2 cut(s)	131, 560
AlwI	GGATC	6 cut(s)	56, 69, 90, 377, 390, 659
AlwNI	CAGNNNCTG	1 cut(s)	605
Ama87I	CYCGRG	1 cut(s)	358
Aor51HI	AGCGCT	1 cut(s)	230
AoxI	GGCC	3 cut(s)	83, 480, 490
ApeKI	GCWGC	5 cut(s)	114, 346, 392, 448, 499
ApoI	RAATTY	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	84, 490
AsuC2I	CCSGG	3 cut(s)	359, 360, 562
AsuHPI	GGTGA	3 cut(s)	154, 196, 674
AsuII	TTCGAA	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	358
BaeGI	GKGCMC	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	482
BamHI	GGATCC	2 cut(s)	61, 382
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	560
BbrPI	CACGTG	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	680
Bbv12I	GWGCWC	2 cut(s)	131, 560
BbvI	GCAGC	5 cut(s)	126, 333, 379, 460, 486
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	3 cut(s)	265, 296, 501
BcnI	CCSGG	3 cut(s)	359, 360, 562
BfoI	RGCGCY	1 cut(s)	232
BisI	GCNGC	7 cut(s)	115, 253, 300, 347, 393, 449, 500
BlsI	GCNGC	7 cut(s)	116, 254, 301, 348, 394, 450, 501
Bme1390I	CCNGG	3 cut(s)	359, 360, 562
BmeT110I	CYCGRG	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	84, 490
BmiI	GGNNCC	4 cut(s)	63, 265, 384, 441
BmrFI	CCNGG	3 cut(s)	359, 360, 562
BpiI	GAAGAC	1 cut(s)	680
BpmI	CTGGAG	2 cut(s)	199, 551
Bpu14I	TTCGAA	1 cut(s)	224
BpuMI	CCSGG	3 cut(s)	359, 360, 562
BsaAI	YACGTR	1 cut(s)	277
BsaBI	GATNNNNATC	2 cut(s)	60, 242
BsaHI	GRCGYC	2 cut(s)	297, 341
BsaJI	CCNNGG	5 cut(s)	358, 359, 429, 483, 646
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 25, 435, 502
Bse1I	ACTGG	1 cut(s)	33
Bse8I	GATNNNNATC	2 cut(s)	60, 242
BseDI	CCNNGG	5 cut(s)	358, 359, 429, 483, 646
BseGI	GGATG	1 cut(s)	517
BseJI	GATNNNNATC	2 cut(s)	60, 242
BseLI	CCNNNNNNNGG	4 cut(s)	24, 25, 435, 502
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	2 cut(s)	185, 568
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	5 cut(s)	126, 333, 379, 460, 486
BseYI	CCCAGC	1 cut(s)	86
BshFI	GGCC	3 cut(s)	85, 482, 492
BshNI	GGYRCC	1 cut(s)	263
BsiHKAI	GWGCWC	2 cut(s)	131, 560
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	5 cut(s)	65, 82, 359, 496, 561
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	4 cut(s)	24, 25, 435, 502
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	3 cut(s)	85, 482, 492
BsoBI	CYCGRG	1 cut(s)	358
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	3 cut(s)	131, 266, 560
Bsp143I	GATC	6 cut(s)	61, 95, 134, 243, 382, 664
BspANI	GGCC	3 cut(s)	85, 482, 492
BspLI	GGNNCC	4 cut(s)	63, 265, 384, 441
BspPI	GGATC	6 cut(s)	56, 69, 90, 377, 390, 659
BspT104I	TTCGAA	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	5 cut(s)	358, 359, 429, 483, 646
BssMI	GATC	6 cut(s)	61, 95, 134, 243, 382, 664
BssNI	GRCGYC	2 cut(s)	297, 341
BssT1I	CCWWGG	2 cut(s)	429, 646
Bst6I	CTCTTC	2 cut(s)	110, 203
BstACI	GRCGYC	2 cut(s)	297, 341
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstBAI	YACGTR	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	15, 397, 490
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	517
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	6 cut(s)	64, 98, 137, 246, 385, 667
BstMBI	GATC	6 cut(s)	61, 95, 134, 243, 382, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 261, 308, 641
BstSCI	CCNGG	3 cut(s)	357, 358, 560
BstSLI	GKGCMC	1 cut(s)	266
BstV1I	GCAGC	5 cut(s)	126, 333, 379, 460, 486
BstV2I	GAAGAC	1 cut(s)	680
BstX2I	RGATCY	2 cut(s)	61, 382
BstXI	CCANNNNNNTGG	1 cut(s)	647
BstYI	RGATCY	2 cut(s)	61, 382
BsuRI	GGCC	3 cut(s)	85, 482, 492
BtgI	CCRYGG	1 cut(s)	483
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	517
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	1 cut(s)	458
Cac8I	GCNNGC	3 cut(s)	15, 397, 490
CaiI	CAGNNNCTG	1 cut(s)	605
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	2 cut(s)	84, 490
Cfr9I	CCCGGG	1 cut(s)	358
CseI	GACGC	2 cut(s)	305, 330
Csp6I	GTAC	2 cut(s)	258, 286
CviAII	CATG	1 cut(s)	641
CviQI	GTAC	2 cut(s)	258, 286
DpnI	GATC	6 cut(s)	63, 97, 136, 245, 384, 666
DpnII	GATC	6 cut(s)	61, 95, 134, 243, 382, 664
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	2 cut(s)	110, 203
EarI	CTCTTC	2 cut(s)	110, 203
EciI	GGCGGA	1 cut(s)	298
Ecl136II	GAGCTC	1 cut(s)	558
Eco130I	CCWWGG	2 cut(s)	429, 646
Eco24I	GRGCYC	1 cut(s)	560
Eco47III	AGCGCT	1 cut(s)	230
Eco53kI	GAGCTC	1 cut(s)	558
Eco57I	CTGAAG	2 cut(s)	573, 692
Eco72I	CACGTG	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	358
EcoICRI	GAGCTC	1 cut(s)	558
EcoT14I	CCWWGG	2 cut(s)	429, 646
EcoT38I	GRGCYC	1 cut(s)	560
ErhI	CCWWGG	2 cut(s)	429, 646
FaeI	CATG	1 cut(s)	644
FaiI	YATR	5 cut(s)	59, 479, 619, 621, 642
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	1 cut(s)	640
FauI	CCCGC	5 cut(s)	119, 342, 388, 392, 481
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	7 cut(s)	115, 253, 300, 347, 393, 449, 500
FokI	GGATG	1 cut(s)	524
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	7 cut(s)	115, 253, 300, 347, 393, 449, 500
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	7 cut(s)	115, 253, 300, 347, 393, 449, 500
GsaI	CCCAGC	1 cut(s)	90
GsuI	CTGGAG	2 cut(s)	199, 551
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	3 cut(s)	85, 482, 492
HapII	CCGG	5 cut(s)	65, 82, 359, 496, 561
HgaI	GACGC	2 cut(s)	305, 330
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	2 cut(s)	297, 341
Hin1II	CATG	1 cut(s)	644
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	2 cut(s)	295, 355
HindII	GTYRAC	2 cut(s)	295, 355
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	5 cut(s)	270, 291, 520, 526, 533
HpaII	CCGG	5 cut(s)	65, 82, 359, 496, 561
HphI	GGTGA	3 cut(s)	154, 196, 674
Hpy166II	GTNNAC	2 cut(s)	295, 355
Hpy188I	TCNGA	6 cut(s)	387, 444, 519, 525, 607, 672
Hpy188III	TCNNGA	3 cut(s)	216, 530, 575
Hpy8I	GTNNAC	2 cut(s)	295, 355
Hpy99I	CGWCG	7 cut(s)	9, 53, 56, 251, 299, 346, 373
HpyAV	CCTTC	2 cut(s)	403, 605
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	13, 540, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 261, 308, 641
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	2 cut(s)	297, 341
Hsp92II	CATG	1 cut(s)	644
HspAI	GCGC	1 cut(s)	229
Kzo9I	GATC	6 cut(s)	61, 95, 134, 243, 382, 664
LmnI	GCTCC	5 cut(s)	78, 218, 412, 555, 563
Lsp1109I	GCAGC	5 cut(s)	126, 333, 379, 460, 486
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	6 cut(s)	63, 97, 136, 245, 384, 666
MboI	GATC	6 cut(s)	61, 95, 134, 243, 382, 664
MboII	GAAGA	4 cut(s)	97, 190, 193, 685
MfeI	CAATTG	1 cut(s)	678
MflI	RGATCY	2 cut(s)	61, 382
MhlI	GDGCHC	3 cut(s)	131, 266, 560
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	3 cut(s)	220, 304, 678
MluNI	TGGCCA	1 cut(s)	482
MlyI	GAGTC	3 cut(s)	300, 529, 542
MmeI	TCCRAC	1 cut(s)	503
Mox20I	TGGCCA	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	482
MseI	TTAA	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	482
MspI	CCGG	5 cut(s)	65, 82, 359, 496, 561
MspR9I	CCNGG	3 cut(s)	359, 360, 562
MunI	CAATTG	1 cut(s)	678
MwoI	GCNNNNNNNGC	4 cut(s)	10, 261, 308, 641
NciI	CCSGG	3 cut(s)	359, 360, 562
NdeII	GATC	6 cut(s)	61, 95, 134, 243, 382, 664
NlaIII	CATG	1 cut(s)	644
NlaIV	GGNNCC	4 cut(s)	63, 265, 384, 441
NmuCI	GTSAC	1 cut(s)	160
NspV	TTCGAA	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	270, 526
PkrI	GCNGC	7 cut(s)	116, 254, 301, 348, 394, 450, 501
PleI	GAGTC	3 cut(s)	299, 528, 541
PmaCI	CACGTG	1 cut(s)	277
PmlI	CACGTG	1 cut(s)	277
PpsI	GAGTC	3 cut(s)	299, 528, 541
Ppu21I	YACGTR	1 cut(s)	277
Psp124BI	GAGCTC	1 cut(s)	560
PspCI	CACGTG	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	86
PspN4I	GGNNCC	4 cut(s)	63, 265, 384, 441
PspPI	GGNCC	2 cut(s)	84, 490
PstNI	CAGNNNCTG	1 cut(s)	605
PsuI	RGATCY	2 cut(s)	61, 382
RsaI	GTAC	2 cut(s)	259, 287
RsaNI	GTAC	2 cut(s)	258, 286
SacI	GAGCTC	1 cut(s)	560
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	7 cut(s)	115, 253, 300, 347, 393, 449, 500
Sau3AI	GATC	6 cut(s)	61, 95, 134, 243, 382, 664
Sau96I	GGNCC	2 cut(s)	84, 490
SchI	GAGTC	3 cut(s)	300, 529, 542
ScrFI	CCNGG	3 cut(s)	359, 360, 562
SduI	GDGCHC	3 cut(s)	131, 266, 560
SfuI	TTCGAA	1 cut(s)	224
SmaI	CCCGGG	1 cut(s)	360
Sse9I	AATT	3 cut(s)	220, 304, 678
SstI	GAGCTC	1 cut(s)	560
StyD4I	CCNGG	3 cut(s)	357, 358, 560
StyI	CCWWGG	2 cut(s)	429, 646
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	4 cut(s)	224, 246, 294, 318
TasI	AATT	3 cut(s)	220, 304, 678
TauI	GCSGC	2 cut(s)	255, 302
TfiI	GAWTC	2 cut(s)	270, 526
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	1 cut(s)	458
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	5 cut(s)	114, 346, 392, 448, 499
Tsp45I	GTSAC	1 cut(s)	160
TspGWI	ACGGA	3 cut(s)	148, 303, 479
TspMI	CCCGGG	1 cut(s)	358
TspRI	CASTG	1 cut(s)	458
XapI	RAATTY	1 cut(s)	220
XmaI	CCCGGG	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.