pycom13g06460

Belongs to the GDA1 CD39 NTPase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
4184187 .. 4187439
3253 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g06460.6

Sequence Viewer

Length: 1650 bp
ATGCGACGATTGAATACCCGTAAAGGGGTCAATTCGAAGCCTGCCGACGACGACGACGACAGCAATATGGATCCGGTTAAGCTCCAAATCCGACCCATCACCCGATCCAATCTCTTCTCCCGGAGCTCCAAGCACAACCCCAGATCGAGCCTCTTAATCATCGCCTCAGTCGCCATCGCACTCGCTCTCACAGCATGCTACTTTCTCGTTTCCGCGCGAAATTCGAGAAATTTTGGTACGAAACGGTACGGGATTGTCATCGACGGCGGGAGTACGGGAAGCCGGATCCACGTATTCGGGTACGGAGTTGACGGCGGTAACAGTGCCGTCTTTGATTTTGGAAAGGACGGGTTGGCGTCGATGCGGGTCAATCCGGGGCTCTCGGCTTATGCAGGGGATCCGGAATCGGCAGGTGGGTCGCTGCGGGAGCTTGTGGAGTTTGGGAAGGGGAGGGTTCCGAAGGAGCACTGGGCGGAGACGGAGATTAGGCTTATGGCTACGGCGGGGCTTCGATTGCTTGACTTGGGTGTTCAGAATCGGATTCTGAATTCTTGTAGGAAGGTGCTTCGCAGTTCGGGGTTTAAGTTTCGTGACGAGTGGGCTTCCGTCATTACAGGATCTGATGAAGGATTATATGCTTGGGTTGTTGCAAACCACGCTCTTGGTACTCTTGGTGGCGATCCTGCGCAAACAACTGGGATTATTGAACTTGGTGGAGCTTCTGCTCAGGTGACTTTTGTTTCAAGTGAGTCGGTGCCTCCCGAGTTCTCTCGTGCAATTAAATTTGGAAATGTCACTTACAATCTCTACAGTCACAGCTTTCTTCATTTTGGCCAGAATGTTGCATATGATTCATTGAAAGAGGCTATTGTTTCAGGAGACTTCGACTCAGCTGGTAAGTCACTTCAGGAAAGAATGTCAATAGATCCTTGCACTCCTAAAGGCTACTCATATAAGATGCAGTCTTTGGAGCTTCCTCCACGTTCTTCGGTTGGGAAGAATAGACATTTATCTGCTCTACAATCAAGGGGTAACTTCTCTGAGTGCAGATCTGCTGCAAAAATTATGCTGCAGAAGGGAAAAGAGAAATGCGTGTATCAACATTGCGATATAGGATCAACCTTCATTCCTAAGCTTCGGGGAAAGTTTTTGGCTACAGAAAACTTTTTCTATACATCTAAGTTCTTTGGTTTGTCCCCAAATGGATTTCTTTCAAATTTGATGATGGCTGGACAACAATTTTGTGGAGAAGATTGGTCAAAGATAAAGAAGAGATACCCGACAGTTGATGAAGAAGCTTTGCTGCACTATTGCTTCTCTTCCGCATATGCGGTAGCCCTACTTCATGATAGTCTTGGAATTGCTTTGGATGATGAAAGGATCGGGTTTGCAAATCAGGTGGGAAGTATTCCACTCGATTGGGCACTGGGAGCTTTCATCTTGCAAAGTACATCTGATTTGGACGTAGGGCACTCTGATTGGCTTACCGCCATAATTGATGATGGATCTCCCACATTGCTATCAGTAATTTTTATCTTTTCAATATTAATGTTTACAGTGTGGTCACTGTCAAAGTGGAGGAAGCCACAGCTGAAGACAATTTACGATCTGGAGAAAGGGCGGTATATAGTGACTCGTGTTAGTAGATGA

Protein Analysis

550

Amino Acids

60.35

Weight (kDa)

8.98

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 401
Acc16I TGCGCA 1 cut(s) 687
Acc36I ACCTGC 1 cut(s) 401
AccB1I GGYRCC 1 cut(s) 754
AccII CGCG 2 cut(s) 215, 217
AccIII TCCGGA 1 cut(s) 400
AcoI YGGCCR 1 cut(s) 832
AcsI RAATTY 5 cut(s) 220, 229, 547, 782, 1216
AcuI CTGAAG 2 cut(s) 890, 1613
AcyI GRCGYC 1 cut(s) 356
AfaI GTAC 6 cut(s) 238, 248, 274, 302, 667, 1450
AfiI CCNNNNNNNGG 2 cut(s) 24, 25
AgsI TTSAA 6 cut(s) 13, 707, 744, 859, 1215, 1542
Alw21I GWGCWC 2 cut(s) 128, 468
Alw26I GTCTC 2 cut(s) 470, 873
AlwNI CAGNNNCTG 1 cut(s) 620
Ama87I CYCGRG 1 cut(s) 761
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 1 cut(s) 832
ApeKI GCWGC 4 cut(s) 421, 1055, 1069, 1303
ApoI RAATTY 5 cut(s) 220, 229, 547, 782, 1216
ArsI GACNNNNNNTTYG 2 cut(s) 1224, 1256
AseI ATTAAT 1 cut(s) 1547
AspLEI GCGC 2 cut(s) 217, 688
AsuC2I CCSGG 2 cut(s) 121, 375
AsuHPI GGTGA 2 cut(s) 91, 742
AsuII TTCGAA 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 761
BaeGI GKGCMC 2 cut(s) 1426, 1473
BalI TGGCCA 1 cut(s) 834
BamHI GGATCC 3 cut(s) 70, 285, 397
BanI GGYRCC 1 cut(s) 754
BanII GRGCYC 2 cut(s) 128, 381
BarI GAAGNNNNNNTAC 4 cut(s) 1326, 1358, 1586, 1618
BauI CACGAG 2 cut(s) 771, 1635
BbsI GAAGAC 1 cut(s) 1601
Bbv12I GWGCWC 2 cut(s) 128, 468
BbvI GCAGC 4 cut(s) 408, 1042, 1056, 1290
BccI CCATC 4 cut(s) 104, 182, 1219, 1496
BceAI ACGGC 4 cut(s) 280, 311, 328, 516
BcgI CGANNNNNNTGC 2 cut(s) 399, 433
BcnI CCSGG 2 cut(s) 121, 375
BcoDI GTCTC 2 cut(s) 470, 873
BfmI CTRYAG 3 cut(s) 808, 1070, 1155
BfuAI ACCTGC 1 cut(s) 401
BglII AGATCT 1 cut(s) 1049
BisI GCNGC 4 cut(s) 422, 1056, 1070, 1304
BlsI GCNGC 4 cut(s) 423, 1057, 1071, 1305
Bme1390I CCNGG 2 cut(s) 121, 375
BmeT110I CYCGRG 1 cut(s) 761
BmiI GGNNCC 5 cut(s) 72, 287, 399, 456, 756
BmrFI CCNGG 2 cut(s) 121, 375
BmrI ACTGGG 3 cut(s) 478, 705, 1436
BmsI GCATC 2 cut(s) 351, 948
BmuI ACTGGG 3 cut(s) 478, 705, 1436
BpiI GAAGAC 1 cut(s) 1601
BpmI CTGGAG 1 cut(s) 1631
Bpu10I CCTNAGC 2 cut(s) 726, 1131
Bpu14I TTCGAA 1 cut(s) 35
BpuMI CCSGG 2 cut(s) 121, 375
BsaAI YACGTR 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 374
BsaWI WCCGGW 2 cut(s) 73, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 25
Bse1I ACTGG 3 cut(s) 473, 700, 1431
Bse3DI GCAATG 2 cut(s) 1102, 1514
Bse8I GATNNNNATC 1 cut(s) 257
BseAI TCCGGA 1 cut(s) 400
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 1 cut(s) 1375
BseJI GATNNNNATC 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 24, 25
BseMI GCAATG 2 cut(s) 1102, 1514
BseMII CTCAG 4 cut(s) 180, 740, 903, 1032
BseNI ACTGG 3 cut(s) 473, 700, 1431
BseSI GKGCMC 2 cut(s) 1426, 1473
BseXI GCAGC 4 cut(s) 408, 1042, 1056, 1290
BsgI GTGCAG 2 cut(s) 1066, 1289
Bsh1236I CGCG 2 cut(s) 215, 217
BshFI GGCC 1 cut(s) 834
BshNI GGYRCC 1 cut(s) 754
BsiHKAI GWGCWC 2 cut(s) 128, 468
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 5 cut(s) 74, 121, 283, 374, 401
BslFI GGGAC 1 cut(s) 1180
BslI CCNNNNNNNGG 2 cut(s) 24, 25
BsmAI GTCTC 2 cut(s) 470, 873
BsmBI CGTCTC 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 1180
BsnI GGCC 1 cut(s) 834
BsoBI CYCGRG 1 cut(s) 761
Bsp119I TTCGAA 1 cut(s) 35
Bsp1286I GDGCHC 5 cut(s) 128, 381, 468, 1426, 1473
Bsp13I TCCGGA 1 cut(s) 400
BspANI GGCC 1 cut(s) 834
BspCNI CTCAG 4 cut(s) 179, 739, 902, 1033
BspEI TCCGGA 1 cut(s) 400
BspFNI CGCG 2 cut(s) 215, 217
BspHI TCATGA 1 cut(s) 1345
BspLI GGNNCC 5 cut(s) 72, 287, 399, 456, 756
BspMAI CTGCAG 1 cut(s) 1074
BspMI ACCTGC 1 cut(s) 401
BspT104I TTCGAA 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 754
BsrDI GCAATG 2 cut(s) 1102, 1514
BsrI ACTGG 3 cut(s) 473, 700, 1431
BssECI CCNNGG 1 cut(s) 374
BssNI GRCGYC 1 cut(s) 356
BssSI CACGAG 2 cut(s) 771, 1635
Bst2BI CACGAG 2 cut(s) 771, 1635
Bst4CI ACNGT 6 cut(s) 246, 323, 812, 1285, 1558, 1569
Bst6I CTCTTC 3 cut(s) 119, 1265, 1324
BstACI GRCGYC 1 cut(s) 356
BstBAI YACGTR 1 cut(s) 292
BstBI TTCGAA 1 cut(s) 35
BstC8I GCNNGC 2 cut(s) 42, 196
BstDEI CTNAG 6 cut(s) 166, 726, 889, 1041, 1131, 1179
BstF5I GGATG 1 cut(s) 1375
BstFNI CGCG 2 cut(s) 215, 217
BstHHI GCGC 2 cut(s) 217, 688
BstMAI GTCTC 2 cut(s) 470, 873
BstMWI GCNNNNNNNGC 6 cut(s) 170, 191, 427, 514, 656, 1430
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 119, 373
BstSFI CTRYAG 3 cut(s) 808, 1070, 1155
BstSLI GKGCMC 2 cut(s) 1426, 1473
BstUI CGCG 2 cut(s) 215, 217
BstV1I GCAGC 4 cut(s) 408, 1042, 1056, 1290
BstV2I GAAGAC 1 cut(s) 1601
BstX2I RGATCY 7 cut(s) 70, 285, 397, 617, 925, 1049, 1505
BstXI CCANNNNNNTGG 2 cut(s) 662, 1419
BstYI RGATCY 7 cut(s) 70, 285, 397, 617, 925, 1049, 1505
BsuRI GGCC 1 cut(s) 834
BtgZI GCGATG 2 cut(s) 145, 160
BtsCI GGATG 1 cut(s) 1375
BtsIMutI CAGTG 5 cut(s) 328, 466, 1424, 1563, 1565
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 2 cut(s) 42, 196
CaiI CAGNNNCTG 1 cut(s) 620
CciI TCATGA 1 cut(s) 1345
CfoI GCGC 2 cut(s) 217, 688
CseI GACGC 1 cut(s) 345
Csp6I GTAC 6 cut(s) 237, 247, 273, 301, 666, 1449
CspCI CAANNNNNGTGG 2 cut(s) 1380, 1415
CviAII CATG 2 cut(s) 195, 1346
CviQI GTAC 6 cut(s) 237, 247, 273, 301, 666, 1449
DdeI CTNAG 6 cut(s) 166, 726, 889, 1041, 1131, 1179
EaeI YGGCCR 1 cut(s) 832
Eam1104I CTCTTC 3 cut(s) 119, 1265, 1324
EarI CTCTTC 3 cut(s) 119, 1265, 1324
EciI GGCGGA 1 cut(s) 488
Ecl136II GAGCTC 1 cut(s) 126
Eco24I GRGCYC 2 cut(s) 128, 381
Eco53kI GAGCTC 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 890, 1613
Eco88I CYCGRG 1 cut(s) 761
EcoICRI GAGCTC 1 cut(s) 126
EcoRI GAATTC 1 cut(s) 547
EcoT38I GRGCYC 2 cut(s) 128, 381
Esp3I CGTCTC 1 cut(s) 470
FaeI CATG 2 cut(s) 198, 1349
FaqI GGGAC 1 cut(s) 1180
FatI CATG 2 cut(s) 194, 1345
FauI CCCGC 4 cut(s) 260, 357, 417, 496
FauNDI CATATG 2 cut(s) 847, 1327
Fnu4HI GCNGC 4 cut(s) 422, 1056, 1070, 1304
FokI GGATG 1 cut(s) 1382
FriOI GRGCYC 2 cut(s) 128, 381
Fsp4HI GCNGC 4 cut(s) 422, 1056, 1070, 1304
FspI TGCGCA 1 cut(s) 687
GlaI GCGC 2 cut(s) 216, 687
GluI GCNGC 4 cut(s) 422, 1056, 1070, 1304
GsuI CTGGAG 1 cut(s) 1631
HaeIII GGCC 1 cut(s) 834
HapII CCGG 5 cut(s) 74, 121, 283, 374, 401
HgaI GACGC 1 cut(s) 345
HhaI GCGC 2 cut(s) 217, 688
Hin1I GRCGYC 1 cut(s) 356
Hin1II CATG 2 cut(s) 198, 1349
Hin6I GCGC 2 cut(s) 215, 686
HinP1I GCGC 2 cut(s) 215, 686
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 2 cut(s) 1133, 1296
HinfI GANTC 7 cut(s) 404, 535, 541, 749, 851, 887, 1633
HpaII CCGG 5 cut(s) 74, 121, 283, 374, 401
HphI GGTGA 2 cut(s) 91, 742
Hpy166II GTNNAC 2 cut(s) 310, 1554
Hpy188I TCNGA 9 cut(s) 92, 459, 534, 540, 546, 622, 1042, 1456, 1477
Hpy188III TCNNGA 8 cut(s) 225, 401, 590, 761, 876, 908, 1346, 1610
Hpy8I GTNNAC 2 cut(s) 310, 1554
Hpy99I CGWCG 7 cut(s) 9, 50, 53, 56, 59, 266, 361
HpyAV CCTTC 6 cut(s) 439, 454, 553, 620, 1069, 1132
HpyCH4III ACNGT 6 cut(s) 246, 323, 812, 1285, 1558, 1569
HpyCH4IV ACGT 3 cut(s) 291, 982, 1464
HpyF10VI GCNNNNNNNGC 6 cut(s) 170, 191, 427, 514, 656, 1430
HpyF3I CTNAG 6 cut(s) 166, 726, 889, 1041, 1131, 1179
HpySE526I ACGT 3 cut(s) 291, 982, 1464
Hsp92I GRCGYC 1 cut(s) 356
Hsp92II CATG 2 cut(s) 198, 1349
HspAI GCGC 2 cut(s) 215, 686
Kpn2I TCCGGA 1 cut(s) 400
LmnI GCTCC 8 cut(s) 87, 123, 131, 427, 463, 716, 970, 1430
Lsp1109I GCAGC 4 cut(s) 408, 1042, 1056, 1290
LweI GCATC 2 cut(s) 351, 948
MaeII ACGT 3 cut(s) 291, 982, 1464
MaeIII GTNAC 9 cut(s) 317, 590, 730, 793, 812, 900, 1031, 1563, 1630
MboII GAAGA 9 cut(s) 106, 815, 978, 1009, 1262, 1282, 1304, 1311, 1606
MflI RGATCY 7 cut(s) 70, 285, 397, 617, 925, 1049, 1505
MhlI GDGCHC 5 cut(s) 128, 381, 468, 1426, 1473
MlsI TGGCCA 1 cut(s) 834
MluNI TGGCCA 1 cut(s) 834
MlyI GAGTC 3 cut(s) 758, 881, 1627
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 7 cut(s) 161, 175, 444, 768, 856, 987, 1572
Mox20I TGGCCA 1 cut(s) 834
MroI TCCGGA 1 cut(s) 400
MscI TGGCCA 1 cut(s) 834
MseI TTAA 5 cut(s) 78, 155, 582, 780, 1547
Msp20I TGGCCA 1 cut(s) 834
MspA1I CMGCKG 2 cut(s) 893, 1591
MspI CCGG 5 cut(s) 74, 121, 283, 374, 401
MspR9I CCNGG 2 cut(s) 121, 375
MvnI CGCG 2 cut(s) 215, 217
MwoI GCNNNNNNNGC 6 cut(s) 170, 191, 427, 514, 656, 1430
NciI CCSGG 2 cut(s) 121, 375
NdeI CATATG 2 cut(s) 847, 1327
NlaIII CATG 2 cut(s) 198, 1349
NlaIV GGNNCC 5 cut(s) 72, 287, 399, 456, 756
NmeAIII GCCGAG 1 cut(s) 362
NmuCI GTSAC 7 cut(s) 590, 730, 793, 812, 900, 1563, 1630
NsbI TGCGCA 1 cut(s) 687
NspI RCATGY 1 cut(s) 198
NspV TTCGAA 1 cut(s) 35
PaeI GCATGC 1 cut(s) 198
PagI TCATGA 1 cut(s) 1345
PaqCI CACCTGC 1 cut(s) 401
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 4 cut(s) 404, 535, 541, 851
PfoI TCCNGGA 1 cut(s) 119
PkrI GCNGC 4 cut(s) 423, 1057, 1071, 1305
PleI GAGTC 3 cut(s) 757, 881, 1627
PpsI GAGTC 3 cut(s) 757, 881, 1627
Ppu21I YACGTR 1 cut(s) 292
PshBI ATTAAT 1 cut(s) 1547
Psp124BI GAGCTC 1 cut(s) 128
PspN4I GGNNCC 5 cut(s) 72, 287, 399, 456, 756
PstI CTGCAG 1 cut(s) 1074
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 7 cut(s) 70, 285, 397, 617, 925, 1049, 1505
PvuII CAGCTG 2 cut(s) 893, 1591
RsaI GTAC 6 cut(s) 238, 248, 274, 302, 667, 1450
RsaNI GTAC 6 cut(s) 237, 247, 273, 301, 666, 1449
SacI GAGCTC 1 cut(s) 128
SaqAI TTAA 5 cut(s) 78, 155, 582, 780, 1547
SatI GCNGC 4 cut(s) 422, 1056, 1070, 1304
SchI GAGTC 3 cut(s) 758, 881, 1627
ScrFI CCNGG 2 cut(s) 121, 375
SduI GDGCHC 5 cut(s) 128, 381, 468, 1426, 1473
SfaNI GCATC 2 cut(s) 351, 948
SfcI CTRYAG 3 cut(s) 808, 1070, 1155
SfuI TTCGAA 1 cut(s) 35
SphI GCATGC 1 cut(s) 198
SspI AATATT 1 cut(s) 1545
SstI GAGCTC 1 cut(s) 128
StyD4I CCNGG 2 cut(s) 119, 373
TaaI ACNGT 6 cut(s) 246, 323, 812, 1285, 1558, 1569
TaiI ACGT 3 cut(s) 294, 985, 1467
TaqI TCGA 8 cut(s) 35, 146, 224, 261, 359, 511, 885, 1416
TatI WGTACW 1 cut(s) 1448
TfiI GAWTC 4 cut(s) 404, 535, 541, 851
Tru1I TTAA 5 cut(s) 78, 155, 582, 780, 1547
Tru9I TTAA 5 cut(s) 78, 155, 582, 780, 1547
TscAI CASTG 5 cut(s) 328, 473, 1431, 1563, 1572
TseFI GTSAC 7 cut(s) 590, 730, 793, 812, 900, 1563, 1630
TseI GCWGC 4 cut(s) 421, 1055, 1069, 1303
Tsp45I GTSAC 7 cut(s) 590, 730, 793, 812, 900, 1563, 1630
TspDTI ATGAA 8 cut(s) 639, 815, 843, 1114, 1305, 1334, 1389, 1426
TspGWI ACGGA 3 cut(s) 318, 494, 595
TspRI CASTG 5 cut(s) 328, 473, 1431, 1563, 1572
VspI ATTAAT 1 cut(s) 1547
XapI RAATTY 5 cut(s) 220, 229, 547, 782, 1216
XceI RCATGY 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.