Rmu_sc0010226.1_g000001

Belongs to the GDA1 CD39 NTPase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010226.1
Physical Location & Seq
Reverse (-)
3292 .. 6917
3626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010226.1_g000001.1.cds

Sequence Viewer

Length: 1638 bp
atgcgacgactgcacgcccgtaaaggggacaccagttctaaacctaccgacgacgatatggatccggtcaagctccaaatccggcccagcacccgatccaatctcttctcccgcagccccaagcagagcaccagatcaagcttcgtaatcctcgcctccgtcaccatcgccaccgctttcgtcctctgctatctcctcttcttcaccagaagctccagaaattcgaagcgctacgggattgtgatcgacggcggcagtacgggcacccgaatccacgtgttcgggtacggagtcgacgccgccaattccgccgtgttcgacttcggcaaggacgggttggcgtccctgcgggtcaacccggggctgtcgtcgtttgcggaggatccgaaagctgcgggcgggtcgttgaaggagcttattgagtttgccaaggggagggttccgaagcagcagtgggggaacacggaggttcggcttatggccacggcgggcctccggctgctggatttggatgttcagagtcggattctggagtcttgcagaaaggtgttgaggagctccgggtttaagtttcaggacgagtgggcttcagtcattacaggttctgacgaaggactatatgcgtgggttgttgcaaaccatgcccttggaactcttggtggtgatcctctgaagacaattgggattattgaacttggcggcgcttctgctcaggggacatttgtttcaagtgagccaatgcctccccagtttgcgcgtcctgtcaaagttggaaatgtcacctacaatctctacagtcacagctttcttcattatggccagaatgttgcatatgaatcgttgaaggaagcacttgcgtcaggagacttcagctcagcttcagaagcacttcagaatagaatgataatagatccttgcactcctaaaggatattcatataaaatggagtcttcaaagctttcaccaagttcgttgggtgagaagaatgaatatttatctgtgctgcaatcgaggggcaacttttctgagtgcagatctgctgcaaacatgatgttgcaaaaaggaaaagataaatgtttatatcaaccctgcaatataggatcaactttcacaccaaagcttcaggggaagtttctggctacagaaaatttctttcacacatccaagttctttggtttgggcccaagggcatttctttctaatctgatgattgctggacaacaattctgtggagatgattggtcaaaattaaagaagagatatcaagcatttgatgaagaagctttgctgcagtattgcttctcttcagcatattctgtggccttacttcatgacagtcttggaatctctttggatgatgaaaggatcagggttgcaaatcaggtcggaagtattccacttgactgggctcttggagctttcatcttgcaaagcacatctgacttggacgtagggcacactgattggatttccgccataattagtgatggatcacccacactgctgtcaataattttcatctttgcaattttgttgtttacagtgtggtctctgtcaaagtggaggaagccccagctgaagacgatttatgatctggagaaagggcggtatatagtctctcgtattagtagaagttga

Protein Analysis

545

Amino Acids

60.03

Weight (kDa)

9.1

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 294
AccII CGCG 1 cut(s) 757
AcoI YGGCCR 2 cut(s) 480, 817
AcsI RAATTY 2 cut(s) 220, 1147
AcuI CTGAAG 8 cut(s) 573, 692, 853, 864, 875, 1106, 1290, 1598
AcvI CACGTG 1 cut(s) 277
AcyI GRCGYC 2 cut(s) 297, 341
AfaI GTAC 2 cut(s) 259, 287
AfeI AGCGCT 1 cut(s) 230
AfiI CCNNNNNNNGG 4 cut(s) 24, 25, 435, 502
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 5 cut(s) 409, 692, 729, 844, 954
Alw21I GWGCWC 2 cut(s) 131, 560
Alw26I GTCTC 3 cut(s) 858, 1554, 1621
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 1 cut(s) 358
Aor51HI AGCGCT 1 cut(s) 230
AoxI GGCC 6 cut(s) 83, 480, 490, 817, 1180, 1320
ApaI GGGCCC 1 cut(s) 1184
ApeKI GCWGC 7 cut(s) 114, 392, 448, 499, 1003, 1040, 1288
ApoI RAATTY 2 cut(s) 220, 1147
Asp700I GAANNNNTTC 1 cut(s) 888
AspLEI GCGC 3 cut(s) 231, 704, 757
AspS9I GGNCC 4 cut(s) 84, 490, 1180, 1181
AsuC2I CCSGG 3 cut(s) 359, 360, 562
AsuHPI GGTGA 7 cut(s) 154, 196, 674, 772, 954, 989, 1485
AsuII TTCGAA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 358
BaeGI GKGCMC 3 cut(s) 266, 1184, 1458
BalI TGGCCA 2 cut(s) 482, 819
BamHI GGATCC 2 cut(s) 61, 382
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 3 cut(s) 560, 1184, 1411
BbrPI CACGTG 1 cut(s) 277
BbsI GAAGAC 3 cut(s) 680, 942, 1586
Bbv12I GWGCWC 2 cut(s) 131, 560
BbvI GCAGC 7 cut(s) 126, 379, 460, 486, 990, 1027, 1275
BccI CCATC 2 cut(s) 173, 1481
BceAI ACGGC 3 cut(s) 265, 296, 501
BcgI CGANNNNNNTGC 2 cut(s) 819, 853
BcnI CCSGG 3 cut(s) 359, 360, 562
BcoDI GTCTC 3 cut(s) 858, 1554, 1621
BfmI CTRYAG 3 cut(s) 793, 1140, 1289
BfoI RGCGCY 2 cut(s) 232, 705
BglII AGATCT 1 cut(s) 1034
BlpI GCTNAGC 1 cut(s) 874
Bme1390I CCNGG 3 cut(s) 359, 360, 562
BmeT110I CYCGRG 1 cut(s) 358
BmgT120I GGNCC 4 cut(s) 84, 490, 1180, 1181
BmiI GGNNCC 5 cut(s) 63, 265, 384, 441, 1182
BmrFI CCNGG 3 cut(s) 359, 360, 562
BmrI ACTGGG 2 cut(s) 742, 1414
BmuI ACTGGG 2 cut(s) 742, 1414
BpiI GAAGAC 3 cut(s) 680, 942, 1586
BpmI CTGGAG 3 cut(s) 199, 551, 1616
Bpu10I CCTNAGC 1 cut(s) 711
Bpu1102I GCTNAGC 1 cut(s) 874
Bpu14I TTCGAA 1 cut(s) 224
BpuMI CCSGG 3 cut(s) 359, 360, 562
BsaAI YACGTR 1 cut(s) 277
BsaBI GATNNNNATC 2 cut(s) 60, 242
BsaHI GRCGYC 2 cut(s) 297, 341
BsaI GGTCTC 1 cut(s) 1554
BsaJI CCNNGG 6 cut(s) 358, 359, 429, 483, 646, 1184
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 25, 435, 502
Bse1I ACTGG 3 cut(s) 33, 748, 1409
Bse8I GATNNNNATC 2 cut(s) 60, 242
BseDI CCNNGG 6 cut(s) 358, 359, 429, 483, 646, 1184
BseGI GGATG 3 cut(s) 517, 1160, 1360
BseJI GATNNNNATC 2 cut(s) 60, 242
BseLI CCNNNNNNNGG 4 cut(s) 24, 25, 435, 502
BseMII CTCAG 3 cut(s) 725, 888, 1017
BseNI ACTGG 3 cut(s) 33, 748, 1409
BseRI GAGGAG 2 cut(s) 185, 568
BseSI GKGCMC 3 cut(s) 266, 1184, 1458
BseXI GCAGC 7 cut(s) 126, 379, 460, 486, 990, 1027, 1275
BseYI CCCAGC 2 cut(s) 86, 1572
BsgI GTGCAG 1 cut(s) 1051
Bsh1236I CGCG 1 cut(s) 757
BshFI GGCC 6 cut(s) 85, 482, 492, 819, 1182, 1322
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 2 cut(s) 131, 560
BsiHKCI CYCGRG 1 cut(s) 358
BsiSI CCGG 5 cut(s) 65, 82, 359, 496, 561
BslFI GGGAC 3 cut(s) 41, 328, 730
BslI CCNNNNNNNGG 4 cut(s) 24, 25, 435, 502
BsmAI GTCTC 3 cut(s) 858, 1554, 1621
BsmFI GGGAC 3 cut(s) 41, 328, 730
BsnI GGCC 6 cut(s) 85, 482, 492, 819, 1182, 1322
Bso31I GGTCTC 1 cut(s) 1554
BsoBI CYCGRG 1 cut(s) 358
Bsp119I TTCGAA 1 cut(s) 224
Bsp120I GGGCCC 1 cut(s) 1180
Bsp1286I GDGCHC 6 cut(s) 131, 266, 560, 1184, 1411, 1458
Bsp1720I GCTNAGC 1 cut(s) 874
BspANI GGCC 6 cut(s) 85, 482, 492, 819, 1182, 1322
BspCNI CTCAG 3 cut(s) 724, 887, 1018
BspFNI CGCG 1 cut(s) 757
BspHI TCATGA 1 cut(s) 1330
BspLI GGNNCC 5 cut(s) 63, 265, 384, 441, 1182
BspMAI CTGCAG 1 cut(s) 1293
BspT104I TTCGAA 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 1554
BsrI ACTGG 3 cut(s) 33, 748, 1409
BssECI CCNNGG 6 cut(s) 358, 359, 429, 483, 646, 1184
BssNI GRCGYC 2 cut(s) 297, 341
BssT1I CCWWGG 3 cut(s) 429, 646, 1184
Bst4CI ACNGT 3 cut(s) 797, 1337, 1543
Bst6I CTCTTC 4 cut(s) 110, 203, 1250, 1309
BstACI GRCGYC 2 cut(s) 297, 341
BstAPI GCANNNNNTGC 1 cut(s) 641
BstBAI YACGTR 1 cut(s) 277
BstBI TTCGAA 1 cut(s) 224
BstC8I GCNNGC 3 cut(s) 15, 397, 490
BstDEI CTNAG 3 cut(s) 711, 874, 1026
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 3 cut(s) 517, 1160, 1360
BstFNI CGCG 1 cut(s) 757
BstH2I RGCGCY 2 cut(s) 232, 705
BstHHI GCGC 3 cut(s) 231, 704, 757
BstMAI GTCTC 3 cut(s) 858, 1554, 1621
BstMWI GCNNNNNNNGC 6 cut(s) 10, 261, 308, 641, 884, 1415
BstSCI CCNGG 3 cut(s) 357, 358, 560
BstSFI CTRYAG 3 cut(s) 793, 1140, 1289
BstSLI GKGCMC 3 cut(s) 266, 1184, 1458
BstUI CGCG 1 cut(s) 757
BstV1I GCAGC 7 cut(s) 126, 379, 460, 486, 990, 1027, 1275
BstV2I GAAGAC 3 cut(s) 680, 942, 1586
BstX2I RGATCY 4 cut(s) 61, 382, 910, 1034
BstXI CCANNNNNNTGG 2 cut(s) 647, 1404
BstYI RGATCY 4 cut(s) 61, 382, 910, 1034
BsuRI GGCC 6 cut(s) 85, 482, 492, 819, 1182, 1322
BtgI CCRYGG 1 cut(s) 483
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 3 cut(s) 517, 1160, 1360
BtsI GCAGTG 2 cut(s) 458, 1499
BtsIMutI CAGTG 4 cut(s) 458, 1458, 1499, 1548
Cac8I GCNNGC 3 cut(s) 15, 397, 490
CaiI CAGNNNCTG 1 cut(s) 605
CciI TCATGA 1 cut(s) 1330
CfoI GCGC 3 cut(s) 231, 704, 757
Cfr13I GGNCC 4 cut(s) 84, 490, 1180, 1181
Cfr9I CCCGGG 1 cut(s) 358
CseI GACGC 4 cut(s) 305, 330, 746, 846
Csp6I GTAC 2 cut(s) 258, 286
CviAII CATG 3 cut(s) 641, 1048, 1331
CviQI GTAC 2 cut(s) 258, 286
DdeI CTNAG 3 cut(s) 711, 874, 1026
EaeI YGGCCR 2 cut(s) 480, 817
Eam1104I CTCTTC 4 cut(s) 110, 203, 1250, 1309
EarI CTCTTC 4 cut(s) 110, 203, 1250, 1309
EciI GGCGGA 2 cut(s) 298, 1462
Ecl136II GAGCTC 1 cut(s) 558
Eco130I CCWWGG 3 cut(s) 429, 646, 1184
Eco24I GRGCYC 3 cut(s) 560, 1184, 1411
Eco31I GGTCTC 1 cut(s) 1554
Eco32I GATATC 1 cut(s) 1262
Eco47III AGCGCT 1 cut(s) 230
Eco53kI GAGCTC 1 cut(s) 558
Eco57I CTGAAG 8 cut(s) 573, 692, 853, 864, 875, 1106, 1290, 1598
Eco72I CACGTG 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 358
EcoICRI GAGCTC 1 cut(s) 558
EcoRV GATATC 1 cut(s) 1262
EcoT14I CCWWGG 3 cut(s) 429, 646, 1184
EcoT38I GRGCYC 3 cut(s) 560, 1184, 1411
ErhI CCWWGG 3 cut(s) 429, 646, 1184
FaeI CATG 3 cut(s) 644, 1051, 1334
FaqI GGGAC 3 cut(s) 41, 328, 730
FatI CATG 3 cut(s) 640, 1047, 1330
FauI CCCGC 5 cut(s) 119, 342, 388, 392, 481
FauNDI CATATG 1 cut(s) 832
FblI GTMKAC 1 cut(s) 294
FokI GGATG 3 cut(s) 524, 1147, 1367
FriOI GRGCYC 3 cut(s) 560, 1184, 1411
GlaI GCGC 3 cut(s) 230, 703, 756
GsaI CCCAGC 2 cut(s) 90, 1576
GsuI CTGGAG 3 cut(s) 199, 551, 1616
HaeII RGCGCY 2 cut(s) 232, 705
HaeIII GGCC 6 cut(s) 85, 482, 492, 819, 1182, 1322
HapII CCGG 5 cut(s) 65, 82, 359, 496, 561
HgaI GACGC 4 cut(s) 305, 330, 746, 846
HhaI GCGC 3 cut(s) 231, 704, 757
Hin1I GRCGYC 2 cut(s) 297, 341
Hin1II CATG 3 cut(s) 644, 1051, 1334
Hin6I GCGC 3 cut(s) 229, 702, 755
HinP1I GCGC 3 cut(s) 229, 702, 755
HincII GTYRAC 2 cut(s) 295, 355
HindII GTYRAC 2 cut(s) 295, 355
HindIII AAGCTT 4 cut(s) 139, 956, 1118, 1281
HinfI GANTC 8 cut(s) 270, 291, 520, 526, 533, 836, 947, 1344
HpaII CCGG 5 cut(s) 65, 82, 359, 496, 561
HphI GGTGA 7 cut(s) 154, 196, 674, 772, 954, 989, 1485
Hpy166II GTNNAC 3 cut(s) 295, 355, 1539
Hpy188III TCNNGA 6 cut(s) 216, 530, 575, 861, 1331, 1595
Hpy8I GTNNAC 3 cut(s) 295, 355, 1539
Hpy99I CGWCG 6 cut(s) 9, 53, 56, 251, 299, 373
HpyAV CCTTC 3 cut(s) 403, 605, 838
HpyCH4III ACNGT 3 cut(s) 797, 1337, 1543
HpyCH4IV ACGT 2 cut(s) 276, 1449
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 261, 308, 641, 884, 1415
HpyF3I CTNAG 3 cut(s) 711, 874, 1026
HpySE526I ACGT 2 cut(s) 276, 1449
Hsp92I GRCGYC 2 cut(s) 297, 341
Hsp92II CATG 3 cut(s) 644, 1051, 1334
HspAI GCGC 3 cut(s) 229, 702, 755
LmnI GCTCC 6 cut(s) 78, 218, 412, 555, 563, 1415
Lsp1109I GCAGC 7 cut(s) 126, 379, 460, 486, 990, 1027, 1275
MaeII ACGT 2 cut(s) 276, 1449
MaeIII GTNAC 3 cut(s) 160, 778, 797
MfeI CAATTG 1 cut(s) 678
MflI RGATCY 4 cut(s) 61, 382, 910, 1034
MhlI GDGCHC 6 cut(s) 131, 266, 560, 1184, 1411, 1458
MlsI TGGCCA 2 cut(s) 482, 819
MluCI AATT 9 cut(s) 220, 304, 678, 1147, 1223, 1247, 1479, 1512, 1527
MluNI TGGCCA 2 cut(s) 482, 819
MlyI GAGTC 4 cut(s) 300, 529, 542, 956
MmeI TCCRAC 3 cut(s) 503, 751, 1366
Mox20I TGGCCA 2 cut(s) 482, 819
MroXI GAANNNNTTC 1 cut(s) 888
MscI TGGCCA 2 cut(s) 482, 819
MseI TTAA 2 cut(s) 567, 1250
Msp20I TGGCCA 2 cut(s) 482, 819
MspA1I CMGCKG 1 cut(s) 1576
MspI CCGG 5 cut(s) 65, 82, 359, 496, 561
MspR9I CCNGG 3 cut(s) 359, 360, 562
MunI CAATTG 1 cut(s) 678
MvnI CGCG 1 cut(s) 757
MwoI GCNNNNNNNGC 6 cut(s) 10, 261, 308, 641, 884, 1415
NciI CCSGG 3 cut(s) 359, 360, 562
NdeI CATATG 1 cut(s) 832
NlaIII CATG 3 cut(s) 644, 1051, 1334
NlaIV GGNNCC 5 cut(s) 63, 265, 384, 441, 1182
NmuCI GTSAC 3 cut(s) 160, 778, 797
NspV TTCGAA 1 cut(s) 224
PagI TCATGA 1 cut(s) 1330
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 4 cut(s) 270, 526, 836, 1344
PleI GAGTC 4 cut(s) 299, 528, 541, 955
PmaCI CACGTG 1 cut(s) 277
PmlI CACGTG 1 cut(s) 277
PpsI GAGTC 4 cut(s) 299, 528, 541, 955
Ppu21I YACGTR 1 cut(s) 277
Psp124BI GAGCTC 1 cut(s) 560
PspCI CACGTG 1 cut(s) 277
PspFI CCCAGC 2 cut(s) 86, 1572
PspN4I GGNNCC 5 cut(s) 63, 265, 384, 441, 1182
PspOMI GGGCCC 1 cut(s) 1180
PspPI GGNCC 4 cut(s) 84, 490, 1180, 1181
PstI CTGCAG 1 cut(s) 1293
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 4 cut(s) 61, 382, 910, 1034
PvuII CAGCTG 1 cut(s) 1576
RsaI GTAC 2 cut(s) 259, 287
RsaNI GTAC 2 cut(s) 258, 286
SacI GAGCTC 1 cut(s) 560
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 567, 1250
Sau96I GGNCC 4 cut(s) 84, 490, 1180, 1181
SchI GAGTC 4 cut(s) 300, 529, 542, 956
ScrFI CCNGG 3 cut(s) 359, 360, 562
SduI GDGCHC 6 cut(s) 131, 266, 560, 1184, 1411, 1458
SfcI CTRYAG 3 cut(s) 793, 1140, 1289
SfuI TTCGAA 1 cut(s) 224
SmaI CCCGGG 1 cut(s) 360
Sse9I AATT 9 cut(s) 220, 304, 678, 1147, 1223, 1247, 1479, 1512, 1527
SspI AATATT 1 cut(s) 992
SstI GAGCTC 1 cut(s) 560
StyD4I CCNGG 3 cut(s) 357, 358, 560
StyI CCWWGG 3 cut(s) 429, 646, 1184
TaaI ACNGT 3 cut(s) 797, 1337, 1543
TaiI ACGT 2 cut(s) 279, 1452
TaqI TCGA 5 cut(s) 224, 246, 294, 318, 1010
TasI AATT 9 cut(s) 220, 304, 678, 1147, 1223, 1247, 1479, 1512, 1527
TauI GCSGC 3 cut(s) 255, 302, 702
TfiI GAWTC 4 cut(s) 270, 526, 836, 1344
Tru1I TTAA 2 cut(s) 567, 1250
Tru9I TTAA 2 cut(s) 567, 1250
TscAI CASTG 4 cut(s) 458, 1465, 1506, 1548
TseFI GTSAC 3 cut(s) 160, 778, 797
TseI GCWGC 7 cut(s) 114, 392, 448, 499, 1003, 1040, 1288
Tsp45I GTSAC 3 cut(s) 160, 778, 797
TspDTI ATGAA 9 cut(s) 800, 849, 924, 1002, 1290, 1319, 1374, 1411, 1507
TspGWI ACGGA 3 cut(s) 148, 303, 479
TspMI CCCGGG 1 cut(s) 358
TspRI CASTG 4 cut(s) 458, 1465, 1506, 1548
XapI RAATTY 2 cut(s) 220, 1147
XmaI CCCGGG 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.