MD16G1072600.v1.1

Belongs to the GDA1 CD39 NTPase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
5094327 .. 5098661
4335 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1072600.v1.1.491

Sequence Viewer

Length: 1653 bp
ATGCGACGATTGAATACCCGTAAAGGGGTCAATTCGAAGCCTGCCGACGACGACGACGACAGCAATATGGATCCGGTTAAGCTCCAAATCCGACCCATCACCCGATCCAATCTCTTCTCCCGGAGCCCCAAGCACAACCCCAGATCGAGCCTCTTAATCTTCGCCTCGGTCGCCATCGCACTCGCTCTCACAGTATGCTACTTTCTCGTTTCCGCGCGAGATTCAATAAATTTTGGTACGAAACGGTACGGGATTGTCATTGACGGTGGGAGTACGGGCAGCCGGATCCACGTTTTCGGGTACGGAGACGATGGCGGTAATGGCGCCGTGTTTGATTTTGGAAAGGACGGGTTGGCATCGATGCGGGTCAATCCTGGGCTCTCGGCGTACGCAGAGGATCCAGAATCGGCAGGCGGGTCGTTGAGGGAGCTCGTGGAGTTTGGGAAGGGGAGGGTTCCGAAAGAGCACTGGGCGGAAACGGAGATTAGGCTTATGGCTACGGCGGGGCTCCGATTGCTTGATCTGGGTGTCCAGAATCGGATTCTGAATTCTTGTAGGAAGGTGCTTCGGGGTTCCGGGTTTAAGTTTCGTGACGAGTGGGCTTCCGTCATTACAGGATCTGATGAAGGATTATATGCTTGGGTTGTTGCAAACCACGCGCTTGGGACTCTGGGTGGTGATCCAATGCAGACAACTGGGATAATTGAACTTGGTGGAGCTTCTGCTCAGGTGACATTTGTTTCAAGTGAGCCGGTGCCTCCCGAGTTCTCCCGTGCTGTTAAATTTGGAAATGTCTCTTACAATCTCTACAGTCACAGCTTTCTTCATTTCGGCCAGAATGTTGCGTTTGATTCATTGAAAGAGGGTATTGTTTCAGGAGACTTCGACTCAGCTGCCGAGTCACTTCAGGAAAGAATGTCATCAGATCCTTGCACTCCTAAAGGCTACTCACATAAGATGCAGTCTTCGAAGCTTTCTCCAAGTTCTTTGGTTGGGAAGAATAGACATCTATCTGCTCTACAATCAAGGGGTAACTTCTCTGAGTGCAGATCTGCTGCAAAAATTATGCTGCAGAAAGGAAAAGAGAAATGCTCCTATCAACATTGCGATATAGGATCAACTTTCATTCCTAAGCTTCGGGGAAAGATTTTGGCTACAGAAAATTTTTTCTATACATCCAAGTTTTTTGGTTTGGCCCCAAAAGCATTTCTTTCGGATTTGATGATAGCTGGACAACAATTCTGTGGAGAAGATTGGTCAAAAATAAAGAAGAGATGGCCAACACTTGATGAAGAAGCTTTGCTGCACTATTGCTTCTCTTCAGCATATGCGGTGGCCCTACTTCACGATAGTCTTGGACTTGCTTTGGATGATGAAAGGATCGGGTTTGCAAATCAGGTGGGAAGTATTCCACTCGATTGGGCTCTGGGGGCTTTCATCTTGCAAAGTACATCTGATTTGGACGTAGGGCACTCTGATTGGCTTACCACCATAATTGGTGATGGATCTCCCACATTGCTATCAATAATTTTCATCTTTTCAATATTGATGTTTACAGTGTGGTGTGTGTCAAAGTGGAGGAAGCCACAGCTGAAGACAATTTACGATCTGGAGAAAGGGCGGTATATAGTCACTCGTGTTAGTAAATGTTGA

Protein Analysis

551

Amino Acids

60.35

Weight (kDa)

8.53

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 81 - 483 6.7e-77 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 323, 754
AccII CGCG 3 cut(s) 215, 217, 659
AciI CCGC 8 cut(s) 213, 315, 364, 414, 473, 503, 1331, 1621
AcoI YGGCCR 2 cut(s) 832, 1277
AcsI RAATTY 4 cut(s) 229, 547, 782, 1162
AcuI CTGAAG 3 cut(s) 890, 1305, 1613
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 6 cut(s) 238, 248, 274, 302, 389, 1450
AfiI CCNNNNNNNGG 2 cut(s) 24, 25
AgsI TTSAA 6 cut(s) 13, 225, 707, 744, 859, 1542
AjnI CCWGG 1 cut(s) 373
Alw21I GWGCWC 2 cut(s) 432, 468
Alw26I GTCTC 3 cut(s) 300, 799, 873
AlwNI CAGNNNCTG 1 cut(s) 620
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 4 cut(s) 832, 1194, 1277, 1335
ApeKI GCWGC 5 cut(s) 279, 893, 1055, 1069, 1303
ApoI RAATTY 4 cut(s) 229, 547, 782, 1162
AspLEI GCGC 3 cut(s) 217, 326, 661
AspS9I GGNCC 2 cut(s) 1195, 1336
AsuC2I CCSGG 2 cut(s) 121, 577
AsuHPI GGTGA 4 cut(s) 91, 689, 742, 1511
AsuII TTCGAA 2 cut(s) 35, 968
AvaI CYCGRG 1 cut(s) 761
BaeGI GKGCMC 1 cut(s) 1473
BalI TGGCCA 1 cut(s) 1279
BamHI GGATCC 3 cut(s) 70, 285, 397
BanI GGYRCC 2 cut(s) 323, 754
BanII GRGCYC 5 cut(s) 128, 381, 432, 510, 1426
BarI GAAGNNNNNNTAC 2 cut(s) 1586, 1618
BauI CACGAG 2 cut(s) 431, 1635
BbsI GAAGAC 2 cut(s) 957, 1601
Bbv12I GWGCWC 2 cut(s) 432, 468
BbvI GCAGC 5 cut(s) 291, 880, 1042, 1056, 1290
BccI CCATC 5 cut(s) 104, 182, 305, 1269, 1496
BceAI ACGGC 2 cut(s) 311, 516
BcgI CGANNNNNNTGC 6 cut(s) 399, 433, 875, 909, 1194, 1228
BciT130I CCWGG 1 cut(s) 375
BcnI CCSGG 2 cut(s) 121, 577
BcoDI GTCTC 3 cut(s) 300, 799, 873
BfmI CTRYAG 3 cut(s) 808, 1070, 1155
BfoI RGCGCY 1 cut(s) 327
BglII AGATCT 1 cut(s) 1049
BisI GCNGC 5 cut(s) 280, 894, 1056, 1070, 1304
BlsI GCNGC 5 cut(s) 281, 895, 1057, 1071, 1305
Bme1390I CCNGG 3 cut(s) 121, 375, 577
BmeT110I CYCGRG 1 cut(s) 761
BmgT120I GGNCC 2 cut(s) 1195, 1336
BmrFI CCNGG 3 cut(s) 121, 375, 577
BmrI ACTGGG 2 cut(s) 478, 705
BmsI GCATC 3 cut(s) 351, 365, 948
BmuI ACTGGG 2 cut(s) 478, 705
BpiI GAAGAC 2 cut(s) 957, 1601
BplI GAGNNNNNCTC 2 cut(s) 1076, 1108
BpmI CTGGAG 1 cut(s) 1631
Bpu10I CCTNAGC 2 cut(s) 726, 1131
Bpu14I TTCGAA 2 cut(s) 35, 968
BpuMI CCSGG 2 cut(s) 121, 577
Bsa29I ATCGAT 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 165, 374
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 25
Bse118I RCCGGY 1 cut(s) 751
Bse1I ACTGG 2 cut(s) 473, 700
Bse3DI GCAATG 2 cut(s) 1102, 1514
BseBI CCWGG 1 cut(s) 375
BseCI ATCGAT 1 cut(s) 359
BseDI CCNNGG 2 cut(s) 165, 374
BseGI GGATG 2 cut(s) 1175, 1375
BseLI CCNNNNNNNGG 2 cut(s) 24, 25
BseMI GCAATG 2 cut(s) 1102, 1514
BseMII CTCAG 3 cut(s) 740, 903, 1032
BseNI ACTGG 2 cut(s) 473, 700
BseSI GKGCMC 1 cut(s) 1473
BseXI GCAGC 5 cut(s) 291, 880, 1042, 1056, 1290
BsgI GTGCAG 2 cut(s) 1066, 1289
Bsh1236I CGCG 3 cut(s) 215, 217, 659
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 4 cut(s) 834, 1196, 1279, 1337
BshNI GGYRCC 2 cut(s) 323, 754
BshVI ATCGAT 1 cut(s) 359
BsiEI CGRYCG 1 cut(s) 171
BsiHKAI GWGCWC 2 cut(s) 432, 468
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 5 cut(s) 74, 121, 283, 576, 752
BsiWI CGTACG 1 cut(s) 387
BslFI GGGAC 1 cut(s) 679
BslI CCNNNNNNNGG 2 cut(s) 24, 25
BsmAI GTCTC 3 cut(s) 300, 799, 873
BsmBI CGTCTC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 679
BsnI GGCC 4 cut(s) 834, 1196, 1279, 1337
BsoBI CYCGRG 1 cut(s) 761
Bsp119I TTCGAA 2 cut(s) 35, 968
Bsp1286I GDGCHC 7 cut(s) 128, 381, 432, 468, 510, 1426, 1473
BspACI CCGC 8 cut(s) 213, 315, 364, 414, 473, 503, 1331, 1621
BspANI GGCC 4 cut(s) 834, 1196, 1279, 1337
BspCNI CTCAG 3 cut(s) 739, 902, 1033
BspDI ATCGAT 1 cut(s) 359
BspFNI CGCG 3 cut(s) 215, 217, 659
BspMAI CTGCAG 1 cut(s) 1074
BspT104I TTCGAA 2 cut(s) 35, 968
BspT107I GGYRCC 2 cut(s) 323, 754
BsrDI GCAATG 2 cut(s) 1102, 1514
BsrFI RCCGGY 1 cut(s) 751
BsrI ACTGG 2 cut(s) 473, 700
BssAI RCCGGY 1 cut(s) 751
BssECI CCNNGG 2 cut(s) 165, 374
BssNI GRCGYC 1 cut(s) 324
BssSI CACGAG 2 cut(s) 431, 1635
Bst2BI CACGAG 2 cut(s) 431, 1635
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 5 cut(s) 193, 246, 266, 812, 1558
Bst6I CTCTTC 3 cut(s) 119, 1265, 1324
BstACI GRCGYC 1 cut(s) 324
BstBI TTCGAA 2 cut(s) 35, 968
BstC8I GCNNGC 2 cut(s) 42, 412
BstDEI CTNAG 4 cut(s) 726, 889, 1041, 1131
BstF5I GGATG 2 cut(s) 1175, 1375
BstFNI CGCG 3 cut(s) 215, 217, 659
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 3 cut(s) 217, 326, 661
BstMAI GTCTC 3 cut(s) 300, 799, 873
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 6 cut(s) 170, 321, 514, 656, 1202, 1430
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 3 cut(s) 119, 373, 575
BstSFI CTRYAG 3 cut(s) 808, 1070, 1155
BstSLI GKGCMC 1 cut(s) 1473
BstUI CGCG 3 cut(s) 215, 217, 659
BstV1I GCAGC 5 cut(s) 291, 880, 1042, 1056, 1290
BstV2I GAAGAC 2 cut(s) 957, 1601
BstX2I RGATCY 7 cut(s) 70, 285, 397, 617, 925, 1049, 1505
BstXI CCANNNNNNTGG 2 cut(s) 662, 1419
BstYI RGATCY 7 cut(s) 70, 285, 397, 617, 925, 1049, 1505
Bsu15I ATCGAT 1 cut(s) 359
BsuRI GGCC 4 cut(s) 834, 1196, 1279, 1337
BsuTUI ATCGAT 1 cut(s) 359
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 2 cut(s) 1175, 1375
BtsIMutI CAGTG 2 cut(s) 466, 1563
Cac8I GCNNGC 2 cut(s) 42, 412
CaiI CAGNNNCTG 1 cut(s) 620
CfoI GCGC 3 cut(s) 217, 326, 661
Cfr10I RCCGGY 1 cut(s) 751
Cfr13I GGNCC 2 cut(s) 1195, 1336
ClaI ATCGAT 1 cut(s) 359
Csp6I GTAC 6 cut(s) 237, 247, 273, 301, 388, 1449
CspCI CAANNNNNGTGG 4 cut(s) 1380, 1415, 1477, 1512
CviQI GTAC 6 cut(s) 237, 247, 273, 301, 388, 1449
DdeI CTNAG 4 cut(s) 726, 889, 1041, 1131
DinI GGCGCC 1 cut(s) 325
EaeI YGGCCR 2 cut(s) 832, 1277
Eam1104I CTCTTC 3 cut(s) 119, 1265, 1324
EarI CTCTTC 3 cut(s) 119, 1265, 1324
EciI GGCGGA 1 cut(s) 488
Ecl136II GAGCTC 1 cut(s) 430
Eco24I GRGCYC 5 cut(s) 128, 381, 432, 510, 1426
Eco53kI GAGCTC 1 cut(s) 430
Eco57I CTGAAG 3 cut(s) 890, 1305, 1613
Eco88I CYCGRG 1 cut(s) 761
EcoICRI GAGCTC 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 373
EcoT38I GRGCYC 5 cut(s) 128, 381, 432, 510, 1426
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
Esp3I CGTCTC 1 cut(s) 300
FalI AAGNNNNNCTT 2 cut(s) 1194, 1226
FaqI GGGAC 1 cut(s) 679
FauI CCCGC 3 cut(s) 357, 407, 496
FauNDI CATATG 1 cut(s) 1327
Fnu4HI GCNGC 5 cut(s) 280, 894, 1056, 1070, 1304
FokI GGATG 2 cut(s) 1162, 1382
FriOI GRGCYC 5 cut(s) 128, 381, 432, 510, 1426
Fsp4HI GCNGC 5 cut(s) 280, 894, 1056, 1070, 1304
GlaI GCGC 3 cut(s) 216, 325, 660
GluI GCNGC 5 cut(s) 280, 894, 1056, 1070, 1304
GsuI CTGGAG 1 cut(s) 1631
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 4 cut(s) 834, 1196, 1279, 1337
HapII CCGG 5 cut(s) 74, 121, 283, 576, 752
HhaI GCGC 3 cut(s) 217, 326, 661
Hin1I GRCGYC 1 cut(s) 324
Hin6I GCGC 3 cut(s) 215, 324, 659
HinP1I GCGC 3 cut(s) 215, 324, 659
HindIII AAGCTT 3 cut(s) 971, 1133, 1296
HinfI GANTC 8 cut(s) 221, 404, 535, 541, 667, 851, 887, 899
HpaII CCGG 5 cut(s) 74, 121, 283, 576, 752
HphI GGTGA 4 cut(s) 91, 689, 742, 1511
Hpy166II GTNNAC 1 cut(s) 1554
Hpy188III TCNNGA 8 cut(s) 401, 532, 590, 761, 876, 908, 1346, 1610
Hpy8I GTNNAC 1 cut(s) 1554
Hpy99I CGWCG 5 cut(s) 9, 50, 53, 56, 59
HpyAV CCTTC 3 cut(s) 439, 553, 620
HpyCH4III ACNGT 5 cut(s) 193, 246, 266, 812, 1558
HpyCH4IV ACGT 2 cut(s) 291, 1464
HpyF10VI GCNNNNNNNGC 6 cut(s) 170, 321, 514, 656, 1202, 1430
HpyF3I CTNAG 4 cut(s) 726, 889, 1041, 1131
HpySE526I ACGT 2 cut(s) 291, 1464
Hsp92I GRCGYC 1 cut(s) 324
HspAI GCGC 3 cut(s) 215, 324, 659
KasI GGCGCC 1 cut(s) 323
LmnI GCTCC 6 cut(s) 87, 123, 427, 513, 716, 1097
Lsp1109I GCAGC 5 cut(s) 291, 880, 1042, 1056, 1290
LweI GCATC 3 cut(s) 351, 365, 948
MaeII ACGT 2 cut(s) 291, 1464
MaeIII GTNAC 6 cut(s) 590, 730, 812, 900, 1031, 1630
MflI RGATCY 7 cut(s) 70, 285, 397, 617, 925, 1049, 1505
MhlI GDGCHC 7 cut(s) 128, 381, 432, 468, 510, 1426, 1473
MlsI TGGCCA 1 cut(s) 1279
MluNI TGGCCA 1 cut(s) 1279
Mly113I GGCGCC 1 cut(s) 324
MlyI GAGTC 3 cut(s) 661, 881, 908
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 8 cut(s) 161, 175, 388, 417, 444, 768, 856, 1572
Mox20I TGGCCA 1 cut(s) 1279
MscI TGGCCA 1 cut(s) 1279
MseI TTAA 4 cut(s) 78, 155, 582, 780
Msp20I TGGCCA 1 cut(s) 1279
MspA1I CMGCKG 2 cut(s) 893, 1591
MspI CCGG 5 cut(s) 74, 121, 283, 576, 752
MspR9I CCNGG 3 cut(s) 121, 375, 577
MvaI CCWGG 1 cut(s) 375
MvnI CGCG 3 cut(s) 215, 217, 659
MwoI GCNNNNNNNGC 6 cut(s) 170, 321, 514, 656, 1202, 1430
NarI GGCGCC 1 cut(s) 324
NciI CCSGG 2 cut(s) 121, 577
NdeI CATATG 1 cut(s) 1327
NmeAIII GCCGAG 2 cut(s) 362, 922
NmuCI GTSAC 5 cut(s) 590, 730, 812, 900, 1630
NspV TTCGAA 2 cut(s) 35, 968
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 5 cut(s) 221, 404, 535, 541, 851
Pfl23II CGTACG 1 cut(s) 387
PfoI TCCNGGA 1 cut(s) 119
PkrI GCNGC 5 cut(s) 281, 895, 1057, 1071, 1305
PleI GAGTC 3 cut(s) 661, 881, 907
PluTI GGCGCC 1 cut(s) 327
PpsI GAGTC 3 cut(s) 661, 881, 907
Psp124BI GAGCTC 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PspLI CGTACG 1 cut(s) 387
PspPI GGNCC 2 cut(s) 1195, 1336
PstI CTGCAG 1 cut(s) 1074
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 7 cut(s) 70, 285, 397, 617, 925, 1049, 1505
PvuII CAGCTG 2 cut(s) 893, 1591
RsaI GTAC 6 cut(s) 238, 248, 274, 302, 389, 1450
RsaNI GTAC 6 cut(s) 237, 247, 273, 301, 388, 1449
SacI GAGCTC 1 cut(s) 432
SaqAI TTAA 4 cut(s) 78, 155, 582, 780
SatI GCNGC 5 cut(s) 280, 894, 1056, 1070, 1304
Sau96I GGNCC 2 cut(s) 1195, 1336
SchI GAGTC 3 cut(s) 661, 881, 908
ScrFI CCNGG 3 cut(s) 121, 375, 577
SduI GDGCHC 7 cut(s) 128, 381, 432, 468, 510, 1426, 1473
SfaNI GCATC 3 cut(s) 351, 365, 948
SfcI CTRYAG 3 cut(s) 808, 1070, 1155
SfoI GGCGCC 1 cut(s) 325
SfuI TTCGAA 2 cut(s) 35, 968
SsiI CCGC 8 cut(s) 213, 315, 364, 414, 473, 503, 1331, 1621
SspDI GGCGCC 1 cut(s) 323
SspI AATATT 1 cut(s) 1545
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 3 cut(s) 119, 373, 575
TaaI ACNGT 5 cut(s) 193, 246, 266, 812, 1558
TaiI ACGT 2 cut(s) 294, 1467
TaqI TCGA 6 cut(s) 35, 146, 359, 885, 968, 1416
TaqII GACCGA 1 cut(s) 157
TatI WGTACW 1 cut(s) 1448
TfiI GAWTC 5 cut(s) 221, 404, 535, 541, 851
Tru1I TTAA 4 cut(s) 78, 155, 582, 780
Tru9I TTAA 4 cut(s) 78, 155, 582, 780
TscAI CASTG 2 cut(s) 473, 1563
TseFI GTSAC 5 cut(s) 590, 730, 812, 900, 1630
TseI GCWGC 5 cut(s) 279, 893, 1055, 1069, 1303
Tsp45I GTSAC 5 cut(s) 590, 730, 812, 900, 1630
TspDTI ATGAA 8 cut(s) 639, 815, 843, 1114, 1305, 1389, 1426, 1522
TspGWI ACGGA 3 cut(s) 318, 494, 595
TspRI CASTG 2 cut(s) 473, 1563
XapI RAATTY 4 cut(s) 229, 547, 782, 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.