MD13G1072000.v1.1

Belongs to the GDA1 CD39 NTPase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
5060159 .. 5064204
4046 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1072000.v1.1.491

Sequence Viewer

Length: 1641 bp
ATGCGACGATTGAATACCCGTAAAGGGAAGCCTGCCGACGACGACGACGACAGCAATATGGATCCGGTTAAGCTCCAAATCCGACCCATCACCCGATCCAATCTCTTCTCCCGGAGTCCCAAGCACAACCCCAGATCGAGCCTCTTAATCATCGCCTCAGTCGCCATCGCACTCGCTCTCACAGTATGCTACTTTCTAGTTTCCGCGCGAAATTCGAGAAATTTTGGTACGAAACGGTACGGGATTGTCATCGACGGCGGGAGTACGGGAAGCCGGATCCATGTATTCGGGTGCGGAGTCGACGGCGGTAATGGCGCCTTGTTTGATTTTGGAAAGGATGGGTTGGCGTCGATGCGGGTTAATCCGGGGCTTTCGGCGTATGCAGAGGATCCGGAATCGGCAGGTGGGTCGCTGCGGGAGCTTGTGGAGTTTGGGAAGGGGAGGGTTCCGAAGGAGCACTGGGCGGAGACGGAGATTAGGCTTATGGCTACGGCGGGGCTTCGATTGCTTGACTTGGGTGTTCAGAATCGGATTCTGAATTCTTGTAGGAAGGTGCTTCGCAGTTCGGGGTTTAAGTTTCGTGACGAGTGGGCTTCCGTCATTACAGGATCTGATGAAGGATTATATGCTTGGGTTGTTGCAAACCACGCTCTTGGTACTCTTGGTGGTGATCCAACCCAAACAACTGGGATTATTGAACTTGGTGGAGCTTCTGCTCAGGTGACTTTTGTTTCAAGTGAGTCAGTGCCTCCTGAGTTCTCTCGTGCAATTAAATTTGGCAATGTCACTTACAATCTCTACAGTCACAGCTTTCTTCATTTCGGCCAGAATGTTGCATATGATTCATTGAAAGAGGCTATTGTTTCTGGAGACTTCGACTCAGCTGCTAAGTCACTTCAGGAAAGAATGTCAATAGATCCTTGCACTCCTAAAGGCTACTCATATAAGATGCAGTCTTTGGAGCTTCCTCCACGTTCTTCGGTTGGGAAGAACAGACATTTATCTGCTCTACAATCAAGGGGTAACTTCTCTGAGTGCAGATCTGCTGCAAAAATTATGCTGCAGAAAGGAAAAGAGAAATGCTCGTATCAACATTGCGATATAGGATCAACTTTCATTCCTAAGCTTCGGGGAAAGTTTTTGGCTACAGAAAACTTTTTCTATACATCTAAGTTCTTTGGTTTGTCCCCAAAAGGATTTCTTTCAAATTTGATGATGGCTGGACAACAATTTTGTGGAGAAGATTGGTCAAAGATAAAGAAGAGATACCCGACAGTTGATGAAGAAGCTTTGCTGCACTATTGCTTCTCTTCAGCATATGCGGTAGCCCTACTTCATGATAGTCTTGGAATTGCTTTGGATGATGAAAGGATCGGGTTTGCAAATCAGGTGGGAAGTATTCCACTCGATTGGGCACTGGGAGCTTTCATCTTGCAAAGTACATCTGATTTGGATGTAGGGCACTCTGATCGGCTTACCGCCATAATTGATGATGGATCTCCCACATTGCTATCAGTAATTTTTATCTTTTCAATATTAATGTTTACAGTGTGGTCACTGTCAAAGTGGAGGAAGCCACAGCTGAAGACAATTTACGATCTGGAGAAAGGGCGGTATATAGTCACTCGTGTTAGTAGATGA

Protein Analysis

547

Amino Acids

60.1

Weight (kDa)

9.01

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 78 - 480 7.6e-77 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 392
AccB1I GGYRCC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 300
AccII CGCG 2 cut(s) 206, 208
AccIII TCCGGA 1 cut(s) 391
AcoI YGGCCR 1 cut(s) 823
AcsI RAATTY 5 cut(s) 211, 220, 538, 773, 1207
AcuI CTGAAG 3 cut(s) 881, 1296, 1604
AcyI GRCGYC 2 cut(s) 315, 347
AfaI GTAC 5 cut(s) 229, 239, 265, 658, 1441
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 6 cut(s) 13, 698, 735, 850, 1206, 1533
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 2 cut(s) 461, 864
AlwNI CAGNNNCTG 1 cut(s) 611
Aor13HI TCCGGA 1 cut(s) 391
AoxI GGCC 1 cut(s) 823
ApeKI GCWGC 5 cut(s) 412, 884, 1046, 1060, 1294
ApoI RAATTY 5 cut(s) 211, 220, 538, 773, 1207
ArsI GACNNNNNNTTYG 2 cut(s) 1215, 1247
AseI ATTAAT 1 cut(s) 1538
AspLEI GCGC 2 cut(s) 208, 317
AsuC2I CCSGG 2 cut(s) 112, 366
AsuHPI GGTGA 3 cut(s) 82, 680, 733
BaeGI GKGCMC 2 cut(s) 1417, 1464
BamHI GGATCC 3 cut(s) 61, 276, 388
BanI GGYRCC 1 cut(s) 314
BarI GAAGNNNNNNTAC 4 cut(s) 1317, 1349, 1577, 1609
BauI CACGAG 2 cut(s) 762, 1626
BbsI GAAGAC 1 cut(s) 1592
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 5 cut(s) 399, 871, 1033, 1047, 1281
BccI CCATC 5 cut(s) 95, 173, 332, 1210, 1487
BceAI ACGGC 3 cut(s) 271, 319, 507
BcgI CGANNNNNNTGC 6 cut(s) 390, 424, 866, 900, 1451, 1485
BcnI CCSGG 2 cut(s) 112, 366
BcoDI GTCTC 2 cut(s) 461, 864
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 3 cut(s) 799, 1061, 1146
BfoI RGCGCY 1 cut(s) 318
BfuAI ACCTGC 1 cut(s) 392
BglII AGATCT 1 cut(s) 1040
BisI GCNGC 5 cut(s) 413, 885, 1047, 1061, 1295
BlsI GCNGC 5 cut(s) 414, 886, 1048, 1062, 1296
Bme1390I CCNGG 2 cut(s) 112, 366
BmiI GGNNCC 5 cut(s) 63, 278, 316, 390, 447
BmrFI CCNGG 2 cut(s) 112, 366
BmrI ACTGGG 3 cut(s) 469, 696, 1427
BmsI GCATC 2 cut(s) 342, 939
BmuI ACTGGG 3 cut(s) 469, 696, 1427
BpiI GAAGAC 1 cut(s) 1592
BplI GAGNNNNNCTC 2 cut(s) 1067, 1099
BpmI CTGGAG 2 cut(s) 888, 1622
Bpu10I CCTNAGC 2 cut(s) 717, 1122
BpuMI CCSGG 2 cut(s) 112, 366
BsaBI GATNNNNATC 1 cut(s) 248
BsaHI GRCGYC 2 cut(s) 315, 347
BsaJI CCNNGG 1 cut(s) 365
BsaWI WCCGGW 2 cut(s) 64, 391
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse1I ACTGG 3 cut(s) 464, 691, 1422
Bse3DI GCAATG 3 cut(s) 787, 1093, 1505
Bse8I GATNNNNATC 1 cut(s) 248
BseAI TCCGGA 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 3 cut(s) 343, 1366, 1459
BseJI GATNNNNATC 1 cut(s) 248
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMI GCAATG 3 cut(s) 787, 1093, 1505
BseMII CTCAG 5 cut(s) 171, 731, 744, 894, 1023
BseNI ACTGG 3 cut(s) 464, 691, 1422
BseSI GKGCMC 2 cut(s) 1417, 1464
BseXI GCAGC 5 cut(s) 399, 871, 1033, 1047, 1281
BsgI GTGCAG 2 cut(s) 1057, 1280
Bsh1236I CGCG 2 cut(s) 206, 208
BshFI GGCC 1 cut(s) 825
BshNI GGYRCC 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 459
BsiSI CCGG 5 cut(s) 65, 112, 274, 365, 392
BslFI GGGAC 2 cut(s) 102, 1171
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 2 cut(s) 461, 864
BsmBI CGTCTC 1 cut(s) 461
BsmFI GGGAC 2 cut(s) 102, 1171
BsnI GGCC 1 cut(s) 825
Bsp1286I GDGCHC 3 cut(s) 459, 1417, 1464
Bsp13I TCCGGA 1 cut(s) 391
BspANI GGCC 1 cut(s) 825
BspCNI CTCAG 5 cut(s) 170, 730, 745, 893, 1024
BspEI TCCGGA 1 cut(s) 391
BspFNI CGCG 2 cut(s) 206, 208
BspHI TCATGA 1 cut(s) 1336
BspLI GGNNCC 5 cut(s) 63, 278, 316, 390, 447
BspMAI CTGCAG 1 cut(s) 1065
BspMI ACCTGC 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 314
BsrDI GCAATG 3 cut(s) 787, 1093, 1505
BsrI ACTGG 3 cut(s) 464, 691, 1422
BssECI CCNNGG 1 cut(s) 365
BssNI GRCGYC 2 cut(s) 315, 347
BssSI CACGAG 2 cut(s) 762, 1626
Bst2BI CACGAG 2 cut(s) 762, 1626
Bst4CI ACNGT 6 cut(s) 184, 237, 803, 1276, 1549, 1560
Bst6I CTCTTC 3 cut(s) 110, 1256, 1315
BstACI GRCGYC 2 cut(s) 315, 347
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 8 cut(s) 157, 717, 753, 880, 888, 1032, 1122, 1170
BstF5I GGATG 3 cut(s) 343, 1366, 1459
BstFNI CGCG 2 cut(s) 206, 208
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 2 cut(s) 208, 317
BstMAI GTCTC 2 cut(s) 461, 864
BstMWI GCNNNNNNNGC 6 cut(s) 161, 312, 418, 505, 647, 1421
BstSCI CCNGG 2 cut(s) 110, 364
BstSFI CTRYAG 3 cut(s) 799, 1061, 1146
BstSLI GKGCMC 2 cut(s) 1417, 1464
BstUI CGCG 2 cut(s) 206, 208
BstV1I GCAGC 5 cut(s) 399, 871, 1033, 1047, 1281
BstV2I GAAGAC 1 cut(s) 1592
BstX2I RGATCY 7 cut(s) 61, 276, 388, 608, 916, 1040, 1496
BstXI CCANNNNNNTGG 3 cut(s) 653, 686, 1410
BstYI RGATCY 7 cut(s) 61, 276, 388, 608, 916, 1040, 1496
BsuRI GGCC 1 cut(s) 825
BtgZI GCGATG 2 cut(s) 136, 151
BtsCI GGATG 3 cut(s) 343, 1366, 1459
BtsIMutI CAGTG 5 cut(s) 457, 750, 1415, 1554, 1556
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 611
CciI TCATGA 1 cut(s) 1336
CfoI GCGC 2 cut(s) 208, 317
CseI GACGC 1 cut(s) 336
Csp6I GTAC 5 cut(s) 228, 238, 264, 657, 1440
CspCI CAANNNNNGTGG 2 cut(s) 1371, 1406
CviAII CATG 2 cut(s) 281, 1337
CviQI GTAC 5 cut(s) 228, 238, 264, 657, 1440
DdeI CTNAG 8 cut(s) 157, 717, 753, 880, 888, 1032, 1122, 1170
DinI GGCGCC 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 823
Eam1104I CTCTTC 3 cut(s) 110, 1256, 1315
EarI CTCTTC 3 cut(s) 110, 1256, 1315
EciI GGCGGA 1 cut(s) 479
Eco57I CTGAAG 3 cut(s) 881, 1296, 1604
EcoRI GAATTC 1 cut(s) 538
EgeI GGCGCC 1 cut(s) 316
EheI GGCGCC 1 cut(s) 316
Esp3I CGTCTC 1 cut(s) 461
FaeI CATG 2 cut(s) 284, 1340
FalI AAGNNNNNCTT 2 cut(s) 1185, 1217
FaqI GGGAC 2 cut(s) 102, 1171
FatI CATG 2 cut(s) 280, 1336
FauI CCCGC 4 cut(s) 251, 348, 408, 487
FauNDI CATATG 2 cut(s) 838, 1318
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 5 cut(s) 413, 885, 1047, 1061, 1295
FokI GGATG 3 cut(s) 350, 1373, 1466
Fsp4HI GCNGC 5 cut(s) 413, 885, 1047, 1061, 1295
FspBI CTAG 1 cut(s) 197
GlaI GCGC 2 cut(s) 207, 316
GluI GCNGC 5 cut(s) 413, 885, 1047, 1061, 1295
GsuI CTGGAG 2 cut(s) 888, 1622
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 1 cut(s) 825
HapII CCGG 5 cut(s) 65, 112, 274, 365, 392
HgaI GACGC 1 cut(s) 336
HhaI GCGC 2 cut(s) 208, 317
Hin1I GRCGYC 2 cut(s) 315, 347
Hin1II CATG 2 cut(s) 284, 1340
Hin6I GCGC 2 cut(s) 206, 315
HinP1I GCGC 2 cut(s) 206, 315
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 2 cut(s) 1124, 1287
HinfI GANTC 8 cut(s) 115, 297, 395, 526, 532, 740, 842, 878
HpaII CCGG 5 cut(s) 65, 112, 274, 365, 392
HphI GGTGA 3 cut(s) 82, 680, 733
Hpy166II GTNNAC 2 cut(s) 301, 1545
Hpy188I TCNGA 9 cut(s) 83, 450, 525, 531, 537, 613, 1033, 1447, 1468
Hpy188III TCNNGA 8 cut(s) 216, 392, 581, 752, 867, 899, 1337, 1601
Hpy8I GTNNAC 2 cut(s) 301, 1545
Hpy99I CGWCG 8 cut(s) 9, 41, 44, 47, 50, 257, 305, 352
HpyAV CCTTC 4 cut(s) 430, 445, 544, 611
HpyCH4III ACNGT 6 cut(s) 184, 237, 803, 1276, 1549, 1560
HpyCH4IV ACGT 1 cut(s) 973
HpyF10VI GCNNNNNNNGC 6 cut(s) 161, 312, 418, 505, 647, 1421
HpyF3I CTNAG 8 cut(s) 157, 717, 753, 880, 888, 1032, 1122, 1170
HpySE526I ACGT 1 cut(s) 973
Hsp92I GRCGYC 2 cut(s) 315, 347
Hsp92II CATG 2 cut(s) 284, 1340
HspAI GCGC 2 cut(s) 206, 315
KasI GGCGCC 1 cut(s) 314
Kpn2I TCCGGA 1 cut(s) 391
LmnI GCTCC 6 cut(s) 78, 418, 454, 707, 961, 1421
Lsp1109I GCAGC 5 cut(s) 399, 871, 1033, 1047, 1281
LweI GCATC 2 cut(s) 342, 939
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 973
MaeIII GTNAC 8 cut(s) 581, 721, 784, 803, 891, 1022, 1554, 1621
MboII GAAGA 9 cut(s) 97, 806, 969, 1000, 1253, 1273, 1295, 1302, 1597
MflI RGATCY 7 cut(s) 61, 276, 388, 608, 916, 1040, 1496
MhlI GDGCHC 3 cut(s) 459, 1417, 1464
Mly113I GGCGCC 1 cut(s) 315
MlyI GAGTC 4 cut(s) 124, 306, 749, 872
MmeI TCCRAC 2 cut(s) 106, 698
MnlI CCTC 8 cut(s) 152, 166, 379, 435, 759, 847, 978, 1563
MroI TCCGGA 1 cut(s) 391
MseI TTAA 6 cut(s) 69, 146, 360, 573, 771, 1538
MspA1I CMGCKG 2 cut(s) 884, 1582
MspI CCGG 5 cut(s) 65, 112, 274, 365, 392
MspR9I CCNGG 2 cut(s) 112, 366
MvnI CGCG 2 cut(s) 206, 208
MwoI GCNNNNNNNGC 6 cut(s) 161, 312, 418, 505, 647, 1421
NarI GGCGCC 1 cut(s) 315
NciI CCSGG 2 cut(s) 112, 366
NdeI CATATG 2 cut(s) 838, 1318
NlaIII CATG 2 cut(s) 284, 1340
NlaIV GGNNCC 5 cut(s) 63, 278, 316, 390, 447
NmuCI GTSAC 7 cut(s) 581, 721, 784, 803, 891, 1554, 1621
PagI TCATGA 1 cut(s) 1336
PaqCI CACCTGC 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 4 cut(s) 395, 526, 532, 842
PfoI TCCNGGA 1 cut(s) 110
PkrI GCNGC 5 cut(s) 414, 886, 1048, 1062, 1296
PleI GAGTC 4 cut(s) 123, 305, 748, 872
PluTI GGCGCC 1 cut(s) 318
PpsI GAGTC 4 cut(s) 123, 305, 748, 872
PshBI ATTAAT 1 cut(s) 1538
PspN4I GGNNCC 5 cut(s) 63, 278, 316, 390, 447
PstI CTGCAG 1 cut(s) 1065
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 7 cut(s) 61, 276, 388, 608, 916, 1040, 1496
PvuII CAGCTG 2 cut(s) 884, 1582
RsaI GTAC 5 cut(s) 229, 239, 265, 658, 1441
RsaNI GTAC 5 cut(s) 228, 238, 264, 657, 1440
SalI GTCGAC 1 cut(s) 299
SaqAI TTAA 6 cut(s) 69, 146, 360, 573, 771, 1538
SatI GCNGC 5 cut(s) 413, 885, 1047, 1061, 1295
SchI GAGTC 4 cut(s) 124, 306, 749, 872
ScrFI CCNGG 2 cut(s) 112, 366
SduI GDGCHC 3 cut(s) 459, 1417, 1464
SfaNI GCATC 2 cut(s) 342, 939
SfcI CTRYAG 3 cut(s) 799, 1061, 1146
SfoI GGCGCC 1 cut(s) 316
SspDI GGCGCC 1 cut(s) 314
SspI AATATT 1 cut(s) 1536
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 2 cut(s) 110, 364
TaaI ACNGT 6 cut(s) 184, 237, 803, 1276, 1549, 1560
TaiI ACGT 1 cut(s) 976
TaqI TCGA 8 cut(s) 137, 215, 252, 300, 350, 502, 876, 1407
TatI WGTACW 1 cut(s) 1439
TfiI GAWTC 4 cut(s) 395, 526, 532, 842
Tru1I TTAA 6 cut(s) 69, 146, 360, 573, 771, 1538
Tru9I TTAA 6 cut(s) 69, 146, 360, 573, 771, 1538
TscAI CASTG 5 cut(s) 464, 750, 1422, 1554, 1563
TseFI GTSAC 7 cut(s) 581, 721, 784, 803, 891, 1554, 1621
TseI GCWGC 5 cut(s) 412, 884, 1046, 1060, 1294
Tsp45I GTSAC 7 cut(s) 581, 721, 784, 803, 891, 1554, 1621
TspDTI ATGAA 8 cut(s) 630, 806, 834, 1105, 1296, 1325, 1380, 1417
TspGWI ACGGA 2 cut(s) 485, 586
TspRI CASTG 5 cut(s) 464, 750, 1422, 1554, 1563
VspI ATTAAT 1 cut(s) 1538
XapI RAATTY 5 cut(s) 211, 220, 538, 773, 1207
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.