AT2G03280

fucose metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011117
Physical Location & Seq
Reverse (-)
996088 .. 998455
2368 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03280.1

Sequence Viewer

Length: 1446 bp
ATGAGTGTCGTCGTCGGAGATAGATCGGAGAGTACTCTGATGCGGAGTGACTATAAAGCTCCTCCGAGTCAAGCTATTCCCAAAGCTCGATTACAAGTTTGGTTCTTTAGAGTTTGTTCTTGCATTTTGGTTTGGACTTGTTTGATTCAGCTCTTTTGGCATTCCCAAATCTTCACTGGTTTAACCAATCACATTTCTAGATTCTCTCTCCCGGTTCAGTCAGTTCCATTACCTCCTCCTCTTCCTCCAAGGAATTACACAAGTAATGGAATTTTACTAGTGTCCTGTAATGGCGGTTTGAATCAAATGCGTGCAGCGATTTGTGATATGGTGACTGTTGCTAGGCTATTGAATTTGACTCTTGTTGTTCCTGAGCTTGATAAAAAATCATTCTGGGCTGATACAAGTGACTTTGAGGACATTTTTGATATAAAGCATTTCATTGATTCGTTAAGAGATGAAGTTAGGATCATAAGGAGACTTCCTAAACGGTATAGTAAGAAGTATGGATTCAAATTGTTCGAAATGCCGCCTGTGAGCTGGTCCAACGACAAATATTACTTGCAACAGGTATTGCCGCGGTTTAGTAAACGTAAAGTTATACATTTCGTTCGGAGTGATACGCGATTGGCGAACAATGGTCTTTCTCTTGACCTTCAAAGGCTGAGATGCCGAGTGAATTTCCAAGGACTGAGATTCACTCCACGGATTGAGGCTTTGGGATCAAAGTTAGTTCGGATTCTTCAACAAAGAGGGTCTTTTGTGGCTTTGCATTTGAGATATGAGATGGACATGTTGGCTTTCTCTGGTTGCACTCATGGTTGTACCGATGAAGAAGCTGAAGAACTCAAAAAGATGAGGTATGCATATCCATGGTGGAGAGAGAAAGAGATAGTTTCAGAAGAAAGGAGAGTGCAAGGACTGTGTCCTTTGACACCGGAGGAGGCGGTTTTGGTTCTTAAAGCATTGGGGTTTCAAAAGGATACACAGATATACATTGCAGCTGGTGAGATTTTTGGTGGTGCAAAGAGATTAGCCCTTCTAAAGGAATCATTTCCACGAATTGTGAAAAAGGAAATGCTATTAGATCCAACAGAATTGCAACAGTTTCAGAACCATTCATCTCAAATGGCAGCTCTAGATTTCATAGTATCTGTAGCCAGCAACACTTTTATTCCTACCTATTATGGAAACATGGCAAAAGTTGTCGAAGGTCATCGGAGGTACCTTGGGTTTAAGAAAACAATCTTGCTAGACCGGAAGAGACTTGTGGAGCTTTTAGACTTGCATAACAACAAAACGCTCTCTTGGGATCAGTTTGCAGTAGCTGTCAAGGATGCCCATCAAGGACGACGAATGGGAGAACCAACACATCGGAAAGTTATCTCCGTTAGACCGAAGGAAGAAGATTACTTCTATGCCAATCCTCAAGAATGTATCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

481

Amino Acids

55.63

Weight (kDa)

9.48

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 92 - 410 5.9e-106 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14020 AT2G03280
fragaria_vesca FvH4_4g30810
malus_domestica MD00G1080900.v1.1 MD16G1067800.v1.1
prunus_persica Prupe.1G279000_v2.0.a1
pyrus_communis pycom13g06080 pycom16g05930 pycom16g05940
rosa_chinensis RchiOBHm_Chr4g0439201
rosa_laevigata RLG00000006288
rosa_multiflora Rmu_sc0002236.1_g000012
rosa_roxburghii Rroxscaffold_5G00380190
rosa_rugosa Rorug04G0317000
rosa_samantha Rh4AG367500 Rh4CG393500 Rh4DG373700
rosa_wichuraiana Rw0G005660 Rw0G011650 Rw5G028530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1224
AccB1I GGYRCC 1 cut(s) 1224
AccII CGCG 2 cut(s) 580, 625
AciI CCGC 6 cut(s) 43, 294, 530, 578, 580, 947
AclWI GGATC 4 cut(s) 476, 730, 1082, 1320
AcsI RAATTY 3 cut(s) 270, 352, 679
AcuI CTGAAG 1 cut(s) 861
AfaI GTAC 3 cut(s) 34, 826, 1226
AfiI CCNNNNNNNGG 1 cut(s) 1045
AflIII ACRYGT 1 cut(s) 792
AgsI TTSAA 6 cut(s) 301, 352, 514, 659, 746, 977
AhlI ACTAGT 1 cut(s) 277
Alw26I GTCTC 2 cut(s) 472, 1258
AlwI GGATC 4 cut(s) 476, 730, 1082, 1320
AlwNI CAGNNNCTG 1 cut(s) 1328
ApeKI GCWGC 3 cut(s) 314, 1001, 1133
ApoI RAATTY 3 cut(s) 270, 352, 679
Asp700I GAANNNNTTC 1 cut(s) 1053
Asp718I GGTACC 1 cut(s) 1224
AspS9I GGNCC 1 cut(s) 543
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 343, 1019
AsuII TTCGAA 1 cut(s) 522
AvaII GGWCC 1 cut(s) 543
BanI GGYRCC 1 cut(s) 1224
BbvI GCAGC 3 cut(s) 326, 1013, 1145
BccI CCATC 2 cut(s) 781, 1350
BciVI GTATCC 1 cut(s) 976
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 472, 1258
BcuI ACTAGT 1 cut(s) 277
BfaI CTAG 5 cut(s) 198, 278, 342, 1139, 1253
BfmI CTRYAG 1 cut(s) 1155
BfuI GTATCC 1 cut(s) 976
BisI GCNGC 5 cut(s) 315, 530, 578, 1002, 1134
BlsI GCNGC 5 cut(s) 316, 531, 579, 1003, 1135
BmcAI AGTACT 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 543
BmgT120I GGNCC 1 cut(s) 543
BmiI GGNNCC 1 cut(s) 1226
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 3 cut(s) 30, 659, 1327
BplI GAGNNNNNCTC 2 cut(s) 685, 717
Bpu10I CCTNAGC 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 1413
BpuMI CCSGG 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 1341
BsaJI CCNNGG 6 cut(s) 248, 578, 685, 704, 872, 1228
BsaWI WCCGGW 2 cut(s) 937, 1257
Bsc4I CCNNNNNNNGG 1 cut(s) 1045
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 996
Bse8I GATNNNNATC 1 cut(s) 1341
BseDI CCNNGG 6 cut(s) 248, 578, 685, 704, 872, 1228
BseGI GGATG 1 cut(s) 1342
BseJI GATNNNNATC 1 cut(s) 1341
BseLI CCNNNNNNNGG 1 cut(s) 1045
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 3 cut(s) 363, 656, 683
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 4 cut(s) 51, 225, 228, 956
BseXI GCAGC 3 cut(s) 326, 1013, 1145
BsgI GTGCAG 1 cut(s) 333
Bsh1236I CGCG 2 cut(s) 580, 625
BshNI GGYRCC 1 cut(s) 1224
BsiSI CCGG 3 cut(s) 212, 938, 1258
BslI CCNNNNNNNGG 1 cut(s) 1045
BsmAI GTCTC 2 cut(s) 472, 1258
BsmI GAATGC 1 cut(s) 160
Bsp119I TTCGAA 1 cut(s) 522
Bsp143I GATC 5 cut(s) 23, 468, 722, 1087, 1312
Bsp19I CCATGG 1 cut(s) 872
BspACI CCGC 6 cut(s) 43, 294, 530, 578, 580, 947
BspCNI CTCAG 3 cut(s) 364, 657, 684
BspFNI CGCG 2 cut(s) 580, 625
BspLI GGNNCC 1 cut(s) 1226
BspPI GGATC 4 cut(s) 476, 730, 1082, 1320
BspT104I TTCGAA 1 cut(s) 522
BspT107I GGYRCC 1 cut(s) 1224
BsrDI GCAATG 1 cut(s) 996
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 6 cut(s) 248, 578, 685, 704, 872, 1228
BssMI GATC 5 cut(s) 23, 468, 722, 1087, 1312
BssT1I CCWWGG 4 cut(s) 248, 685, 872, 1228
Bst4CI ACNGT 4 cut(s) 337, 492, 924, 1107
Bst6I CTCTTC 2 cut(s) 246, 1256
BstBI TTCGAA 1 cut(s) 522
BstC8I GCNNGC 2 cut(s) 312, 1162
BstDEI CTNAG 3 cut(s) 372, 665, 692
BstDSI CCRYGG 3 cut(s) 578, 704, 872
BstENI CCTNNNNNAGG 1 cut(s) 1043
BstF5I GGATG 1 cut(s) 1342
BstFNI CGCG 2 cut(s) 580, 625
BstKTI GATC 5 cut(s) 26, 471, 725, 1090, 1315
BstMAI GTCTC 2 cut(s) 472, 1258
BstMBI GATC 5 cut(s) 23, 468, 722, 1087, 1312
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 1155
BstUI CGCG 2 cut(s) 580, 625
BstV1I GCAGC 3 cut(s) 326, 1013, 1145
BstX2I RGATCY 1 cut(s) 1087
BstYI RGATCY 1 cut(s) 1087
BsuI GTATCC 1 cut(s) 976
BtgI CCRYGG 3 cut(s) 578, 704, 872
BtsCI GGATG 1 cut(s) 1342
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 2 cut(s) 312, 1162
CaiI CAGNNNCTG 1 cut(s) 1328
Cfr13I GGNCC 1 cut(s) 543
Cfr42I CCGCGG 1 cut(s) 581
Csp6I GTAC 3 cut(s) 33, 825, 1225
CviAII CATG 4 cut(s) 793, 818, 873, 1195
CviQI GTAC 3 cut(s) 33, 825, 1225
DdeI CTNAG 3 cut(s) 372, 665, 692
DpnI GATC 5 cut(s) 25, 470, 724, 1089, 1314
DpnII GATC 5 cut(s) 23, 468, 722, 1087, 1312
Eam1104I CTCTTC 2 cut(s) 246, 1256
EarI CTCTTC 2 cut(s) 246, 1256
Eco130I CCWWGG 4 cut(s) 248, 685, 872, 1228
Eco47I GGWCC 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 861
EcoNI CCTNNNNNAGG 1 cut(s) 1043
EcoT14I CCWWGG 4 cut(s) 248, 685, 872, 1228
EcoT22I ATGCAT 1 cut(s) 868
ErhI CCWWGG 4 cut(s) 248, 685, 872, 1228
FaeI CATG 4 cut(s) 796, 821, 876, 1198
FalI AAGNNNNNCTT 2 cut(s) 742, 774
FatI CATG 4 cut(s) 792, 817, 872, 1194
Fnu4HI GCNGC 5 cut(s) 315, 530, 578, 1002, 1134
FokI GGATG 1 cut(s) 1349
Fsp4HI GCNGC 5 cut(s) 315, 530, 578, 1002, 1134
FspBI CTAG 5 cut(s) 198, 278, 342, 1139, 1253
GluI GCNGC 5 cut(s) 315, 530, 578, 1002, 1134
HapII CCGG 3 cut(s) 212, 938, 1258
Hin1II CATG 4 cut(s) 796, 821, 876, 1198
HpaII CCGG 3 cut(s) 212, 938, 1258
HphI GGTGA 2 cut(s) 343, 1019
Hpy166II GTNNAC 1 cut(s) 590
Hpy188III TCNNGA 5 cut(s) 198, 371, 650, 1139, 1430
Hpy8I GTNNAC 1 cut(s) 590
Hpy99I CGWCG 3 cut(s) 14, 17, 1356
HpyAV CCTTC 4 cut(s) 665, 1049, 1205, 1393
HpyCH4III ACNGT 4 cut(s) 337, 492, 924, 1107
HpyCH4IV ACGT 1 cut(s) 592
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 3 cut(s) 372, 665, 692
HpySE526I ACGT 1 cut(s) 592
Hsp92II CATG 4 cut(s) 796, 821, 876, 1198
KpnI GGTACC 1 cut(s) 1228
KspI CCGCGG 1 cut(s) 581
Kzo9I GATC 5 cut(s) 23, 468, 722, 1087, 1312
LmnI GCTCC 2 cut(s) 64, 1273
Lsp1109I GCAGC 3 cut(s) 326, 1013, 1145
LweI GCATC 3 cut(s) 30, 659, 1327
MaeI CTAG 5 cut(s) 198, 278, 342, 1139, 1253
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 3 cut(s) 47, 331, 407
MalI GATC 5 cut(s) 25, 470, 724, 1089, 1314
MboI GATC 5 cut(s) 23, 468, 722, 1087, 1312
MboII GAAGA 9 cut(s) 163, 233, 734, 845, 854, 914, 1273, 1415, 1418
MflI RGATCY 1 cut(s) 1087
MluCI AATT 7 cut(s) 253, 270, 352, 515, 679, 1062, 1097
MlyI GAGTC 2 cut(s) 76, 352
MmeI TCCRAC 2 cut(s) 570, 1115
Mph1103I ATGCAT 1 cut(s) 868
MroXI GAANNNNTTC 1 cut(s) 1053
MseI TTAA 5 cut(s) 182, 452, 960, 1236, 1444
MslI CAYNNNNRTG 1 cut(s) 871
MspA1I CMGCKG 2 cut(s) 580, 1004
MspI CCGG 3 cut(s) 212, 938, 1258
MspR9I CCNGG 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 160
MvnI CGCG 2 cut(s) 580, 625
MwoI GCNNNNNNNGC 1 cut(s) 157
NciI CCSGG 1 cut(s) 212
NcoI CCATGG 1 cut(s) 872
NdeII GATC 5 cut(s) 23, 468, 722, 1087, 1312
NlaIII CATG 4 cut(s) 796, 821, 876, 1198
NlaIV GGNNCC 1 cut(s) 1226
NmeAIII GCCGAG 1 cut(s) 698
NmuCI GTSAC 3 cut(s) 47, 331, 407
NsiI ATGCAT 1 cut(s) 868
NspI RCATGY 1 cut(s) 796
NspV TTCGAA 1 cut(s) 522
PciI ACATGT 1 cut(s) 792
PcsI WCGNNNNNNNCGW 1 cut(s) 629
PctI GAATGC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 1053
PfeI GAWTC 8 cut(s) 145, 201, 301, 446, 510, 696, 739, 1049
PflFI GACNNNGTC 1 cut(s) 924
PkrI GCNGC 5 cut(s) 316, 531, 579, 1003, 1135
PleI GAGTC 2 cut(s) 75, 352
PpsI GAGTC 2 cut(s) 75, 352
PscI ACATGT 1 cut(s) 792
PspN4I GGNNCC 1 cut(s) 1226
PspPI GGNCC 1 cut(s) 543
PstNI CAGNNNCTG 1 cut(s) 1328
PsuI RGATCY 1 cut(s) 1087
PsyI GACNNNGTC 1 cut(s) 924
PvuII CAGCTG 1 cut(s) 1004
RsaI GTAC 3 cut(s) 34, 826, 1226
RsaNI GTAC 3 cut(s) 33, 825, 1225
RseI CAYNNNNRTG 1 cut(s) 871
SacII CCGCGG 1 cut(s) 581
SaqAI TTAA 5 cut(s) 182, 452, 960, 1236, 1444
SatI GCNGC 5 cut(s) 315, 530, 578, 1002, 1134
Sau3AI GATC 5 cut(s) 23, 468, 722, 1087, 1312
Sau96I GGNCC 1 cut(s) 543
ScaI AGTACT 1 cut(s) 34
SchI GAGTC 2 cut(s) 76, 352
ScrFI CCNGG 1 cut(s) 212
SfaNI GCATC 3 cut(s) 30, 659, 1327
SfcI CTRYAG 1 cut(s) 1155
Sfr303I CCGCGG 1 cut(s) 581
SfuI TTCGAA 1 cut(s) 522
SgrBI CCGCGG 1 cut(s) 581
SinI GGWCC 1 cut(s) 543
SmiMI CAYNNNNRTG 1 cut(s) 871
SmlI CTYRAG 1 cut(s) 1428
SmoI CTYRAG 1 cut(s) 1428
SpeI ACTAGT 1 cut(s) 277
Sse9I AATT 7 cut(s) 253, 270, 352, 515, 679, 1062, 1097
SsiI CCGC 6 cut(s) 43, 294, 530, 578, 580, 947
SspI AATATT 1 cut(s) 557
SspMI CTAG 5 cut(s) 198, 278, 342, 1139, 1253
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 4 cut(s) 248, 685, 872, 1228
TaaI ACNGT 4 cut(s) 337, 492, 924, 1107
TaiI ACGT 1 cut(s) 595
TaqI TCGA 3 cut(s) 88, 522, 1209
TaqII GACCGA 1 cut(s) 1411
TasI AATT 7 cut(s) 253, 270, 352, 515, 679, 1062, 1097
TatI WGTACW 1 cut(s) 32
TauI GCSGC 2 cut(s) 532, 580
TfiI GAWTC 8 cut(s) 145, 201, 301, 446, 510, 696, 739, 1049
Tru1I TTAA 5 cut(s) 182, 452, 960, 1236, 1444
Tru9I TTAA 5 cut(s) 182, 452, 960, 1236, 1444
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 3 cut(s) 47, 331, 407
TseI GCWGC 3 cut(s) 314, 1001, 1133
Tsp45I GTSAC 3 cut(s) 47, 331, 407
TspDTI ATGAA 5 cut(s) 430, 474, 846, 1110, 1135
TspGWI ACGGA 2 cut(s) 721, 1378
TspRI CASTG 1 cut(s) 181
Tth111I GACNNNGTC 1 cut(s) 924
VpaK11BI GGWCC 1 cut(s) 543
XagI CCTNNNNNAGG 1 cut(s) 1043
XapI RAATTY 3 cut(s) 270, 352, 679
XbaI TCTAGA 2 cut(s) 197, 1138
XceI RCATGY 1 cut(s) 796
XcmI CCANNNNNNNNNTGG 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 1053
XspI CTAG 5 cut(s) 198, 278, 342, 1139, 1253
ZrmI AGTACT 1 cut(s) 34
Zsp2I ATGCAT 1 cut(s) 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.