Rorug04G0317000

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011117
Physical Location & Seq
Forward (+)
49114897 .. 49115238
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0317000.1

Sequence Viewer

Length: 342 bp
ATGGAGGATGTAGCATACGGCTATTTAATTGAGTTGGTAGAAAGATGTGTGGTACAAATTGGGGAACAGGGTTCAGTTAGAAAGATTAAATCTTGTCATCTTCATGATCTCATGCGAGACATGTGCTTAAGAAAGGCGAAAGAGGAGAACTTTCTCCATAATGTCAATTTTTCACATCAAAACAGGACCCCTGTTTCTTCTTCCATGGTAACCAATGCTACAGCAACGGTTAAAGTTAGAAGACTTGCAATTTATTTTAATAGGAGAAAAATTCAGTCACAGTTCCCAAATTATGCTGCCAAGGCCAATTTGATACCCGAACTCTCAAAAGTATCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

113

Amino Acids

13.01

Weight (kDa)

9.62

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 1 - 41 2.9e-07 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14020 AT2G03280
fragaria_vesca FvH4_4g30810
malus_domestica MD00G1080900.v1.1 MD16G1067800.v1.1
prunus_persica Prupe.1G279000_v2.0.a1
pyrus_communis pycom13g06080 pycom16g05930 pycom16g05940
rosa_chinensis RchiOBHm_Chr4g0439201
rosa_laevigata RLG00000006288
rosa_multiflora Rmu_sc0002236.1_g000012
rosa_roxburghii Rroxscaffold_5G00380190
rosa_rugosa Rorug04G0317000
rosa_samantha Rh4AG367500 Rh4CG393500 Rh4DG373700
rosa_wichuraiana Rw0G005660 Rw0G011650 Rw5G028530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 270
AfaI GTAC 1 cut(s) 54
AflII CTTAAG 1 cut(s) 127
AflIII ACRYGT 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 111
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 186
AvaII GGWCC 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 105, 139
BcoDI GTCTC 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 219
BfrI CTTAAG 1 cut(s) 127
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 204, 300
BseDI CCNNGG 2 cut(s) 204, 300
BseGI GGATG 1 cut(s) 13
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 283
BshFI GGCC 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 106
Bsp19I CCATGG 1 cut(s) 204
BspANI GGCC 1 cut(s) 305
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 188
BspTI CTTAAG 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 204, 300
BssMI GATC 1 cut(s) 106
BssT1I CCWWGG 2 cut(s) 204, 300
Bst4CI ACNGT 2 cut(s) 229, 282
BstAFI CTTAAG 1 cut(s) 127
BstDSI CCRYGG 1 cut(s) 204
BstEII GGTNACC 1 cut(s) 208
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNSI RCATGY 1 cut(s) 124
BstPI GGTNACC 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 247
BsuRI GGCC 1 cut(s) 305
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 13
CciI TCATGA 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 53
CviAII CATG 4 cut(s) 104, 112, 121, 205
CviJI RGCY 2 cut(s) 21, 305
CviKI_1 RGCY 2 cut(s) 21, 305
CviQI GTAC 1 cut(s) 53
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 204, 300
Eco47I GGWCC 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 186
EcoO65I GGTNACC 1 cut(s) 208
EcoT14I CCWWGG 2 cut(s) 204, 300
ErhI CCWWGG 2 cut(s) 204, 300
FaeI CATG 4 cut(s) 107, 115, 124, 208
FaiI YATR 7 cut(s) 16, 105, 113, 122, 159, 206, 294
FatI CATG 4 cut(s) 103, 111, 120, 204
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 297
HaeIII GGCC 1 cut(s) 305
Hin1II CATG 4 cut(s) 107, 115, 124, 208
Hpy188III TCNNGA 1 cut(s) 104
HpyCH4III ACNGT 2 cut(s) 229, 282
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
Hsp92II CATG 4 cut(s) 107, 115, 124, 208
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 3 cut(s) 53, 169, 204
Lsp1109I GCAGC 1 cut(s) 283
MaeIII GTNAC 2 cut(s) 208, 276
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 4 cut(s) 92, 189, 192, 252
MluCI AATT 7 cut(s) 27, 57, 166, 249, 270, 289, 307
MnlI CCTC 1 cut(s) 136
MseI TTAA 5 cut(s) 26, 87, 128, 231, 258
MslI CAYNNNNRTG 1 cut(s) 102
MspCI CTTAAG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 302
NcoI CCATGG 1 cut(s) 204
NdeII GATC 1 cut(s) 106
NlaIII CATG 4 cut(s) 107, 115, 124, 208
NlaIV GGNNCC 1 cut(s) 188
NmuCI GTSAC 1 cut(s) 276
NspI RCATGY 1 cut(s) 124
PagI TCATGA 1 cut(s) 103
PciI ACATGT 1 cut(s) 120
PkrI GCNGC 1 cut(s) 298
PpuMI RGGWCCY 1 cut(s) 186
PscI ACATGT 1 cut(s) 120
Psp5II RGGWCCY 1 cut(s) 186
PspEI GGTNACC 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 188
PspPI GGNCC 1 cut(s) 186
PspPPI RGGWCCY 1 cut(s) 186
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 5 cut(s) 26, 87, 128, 231, 258
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 7 cut(s) 27, 57, 166, 249, 270, 289, 307
StyI CCWWGG 2 cut(s) 204, 300
TaaI ACNGT 2 cut(s) 229, 282
TasI AATT 7 cut(s) 27, 57, 166, 249, 270, 289, 307
Tru1I TTAA 5 cut(s) 26, 87, 128, 231, 258
Tru9I TTAA 5 cut(s) 26, 87, 128, 231, 258
TseFI GTSAC 1 cut(s) 276
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 1 cut(s) 92
Vha464I CTTAAG 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 1 cut(s) 270
XceI RCATGY 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.