pycom16g05930

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011117
Physical Location & Seq
Forward (+)
3783632 .. 3784711
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g05930.1

Sequence Viewer

Length: 360 bp
ATGGACGTTAGATCTGAGGGCGCTTTACAGGTGCGATGCGATAAGATTCCGGCGCCGGTGATTGGGCGGACGCGGTTGCAGGTGTGGTTCATTCGGGTGTGTTCGAGCTTGTTTCTGTGGACGTGTTTGGTCCAGTTAGTGGCGGTTGGGGAGCTATGGCATCCGCGTTTGATCTCCAATATGACCCATCGGATTTCCGAAATCACGCAGCTTCCACTTCCGGCGGTTCCCTCGCCGCCGCCTCTTCTCCCCGCCAGAAATTATACAAGTAATGGGTTTCTTAGAGTTTCCTGCAATGGGGGCTTGAATCAAATGCGTGCTGCGGTTTTTGTGACATGGTCACTGTTGCCCGGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

120

Amino Acids

13.3

Weight (kDa)

10.13

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011117)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14020 AT2G03280
fragaria_vesca FvH4_4g30810
malus_domestica MD00G1080900.v1.1 MD16G1067800.v1.1
prunus_persica Prupe.1G279000_v2.0.a1
pyrus_communis pycom13g06080 pycom16g05930 pycom16g05940
rosa_chinensis RchiOBHm_Chr4g0439201
rosa_laevigata RLG00000006288
rosa_multiflora Rmu_sc0002236.1_g000012
rosa_roxburghii Rroxscaffold_5G00380190
rosa_rugosa Rorug04G0317000
rosa_samantha Rh4AG367500 Rh4CG393500 Rh4DG373700
rosa_wichuraiana Rw0G005660 Rw0G011650 Rw5G028530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 139
AccII CGCG 2 cut(s) 73, 166
AciI CCGC 9 cut(s) 67, 73, 143, 164, 224, 236, 239, 252, 323
AcyI GRCGYC 1 cut(s) 53
AfiI CCNNNNNNNGG 3 cut(s) 62, 139, 297
AflIII ACRYGT 1 cut(s) 122
AgsI TTSAA 1 cut(s) 307
AjiI CACGTC 1 cut(s) 123
AluBI AGCT 3 cut(s) 108, 154, 211
AluI AGCT 3 cut(s) 108, 154, 211
ApeKI GCWGC 2 cut(s) 208, 320
AspLEI GCGC 2 cut(s) 23, 55
AspS9I GGNCC 1 cut(s) 130
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 70
AvaII GGWCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 52
BbvI GCAGC 2 cut(s) 220, 307
BccI CCATC 1 cut(s) 195
BcnI CCSGG 1 cut(s) 351
BfoI RGCGCY 2 cut(s) 24, 56
BfuAI ACCTGC 1 cut(s) 70
BglII AGATCT 1 cut(s) 11
BisI GCNGC 4 cut(s) 209, 236, 239, 321
BlsI GCNGC 4 cut(s) 210, 237, 240, 322
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 130
BmgBI CACGTC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 2 cut(s) 54, 228
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 2 cut(s) 26, 169
BpuMI CCSGG 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 53
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 139, 297
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 301
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 3 cut(s) 62, 139, 297
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 220, 307
Bsh1236I CGCG 2 cut(s) 73, 166
BshNI GGYRCC 1 cut(s) 52
BsiSI CCGG 4 cut(s) 50, 56, 221, 351
BslI CCNNNNNNNGG 3 cut(s) 62, 139, 297
Bsp143I GATC 2 cut(s) 11, 171
BspACI CCGC 9 cut(s) 67, 73, 143, 164, 224, 236, 239, 252, 323
BspCNI CTCAG 1 cut(s) 7
BspFNI CGCG 2 cut(s) 73, 166
BspLI GGNNCC 2 cut(s) 54, 228
BspMI ACCTGC 1 cut(s) 70
BspT107I GGYRCC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 55
BssMI GATC 2 cut(s) 11, 171
BssNI GRCGYC 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 345
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 15, 281
BstF5I GGATG 1 cut(s) 160
BstFNI CGCG 2 cut(s) 73, 166
BstH2I RGCGCY 2 cut(s) 24, 56
BstHHI GCGC 2 cut(s) 23, 55
BstKTI GATC 2 cut(s) 14, 174
BstMBI GATC 2 cut(s) 11, 171
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 349
BstUI CGCG 2 cut(s) 73, 166
BstV1I GCAGC 2 cut(s) 220, 307
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BtgZI GCGATG 1 cut(s) 49
BtrI CACGTC 1 cut(s) 123
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 341
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 318
CfoI GCGC 2 cut(s) 23, 55
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 130
CseI GACGC 1 cut(s) 79
CviAII CATG 1 cut(s) 336
CviJI RGCY 5 cut(s) 108, 154, 211, 303, 354
CviKI_1 RGCY 5 cut(s) 108, 154, 211, 303, 354
DdeI CTNAG 2 cut(s) 15, 281
DinI GGCGCC 1 cut(s) 54
DpnI GATC 2 cut(s) 13, 173
DpnII GATC 2 cut(s) 11, 171
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
EciI GGCGGA 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 130
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
FaeI CATG 1 cut(s) 339
FaiI YATR 4 cut(s) 157, 182, 264, 337
FatI CATG 1 cut(s) 335
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 4 cut(s) 209, 236, 239, 321
FokI GGATG 1 cut(s) 147
Fsp4HI GCNGC 4 cut(s) 209, 236, 239, 321
GlaI GCGC 2 cut(s) 22, 54
GluI GCNGC 4 cut(s) 209, 236, 239, 321
HaeII RGCGCY 2 cut(s) 24, 56
HapII CCGG 4 cut(s) 50, 56, 221, 351
HgaI GACGC 1 cut(s) 79
HhaI GCGC 2 cut(s) 23, 55
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 1 cut(s) 339
Hin6I GCGC 2 cut(s) 21, 53
HinP1I GCGC 2 cut(s) 21, 53
HinfI GANTC 2 cut(s) 46, 307
HpaII CCGG 4 cut(s) 50, 56, 221, 351
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 3 cut(s) 16, 192, 199
Hpy8I GTNNAC 1 cut(s) 120
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4IV ACGT 2 cut(s) 6, 122
HpyCH4V TGCA 2 cut(s) 79, 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 2 cut(s) 15, 281
HpySE526I ACGT 2 cut(s) 6, 122
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 1 cut(s) 339
HspAI GCGC 2 cut(s) 21, 53
KasI GGCGCC 1 cut(s) 52
Kzo9I GATC 2 cut(s) 11, 171
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 8 cut(s) 14, 63, 65, 69, 146, 234, 268, 304
Lsp1109I GCAGC 2 cut(s) 220, 307
LweI GCATC 2 cut(s) 26, 169
MaeII ACGT 2 cut(s) 6, 122
MaeIII GTNAC 2 cut(s) 331, 339
MalI GATC 2 cut(s) 13, 173
MboI GATC 2 cut(s) 11, 171
MboII GAAGA 1 cut(s) 236
MflI RGATCY 1 cut(s) 11
MluCI AATT 1 cut(s) 259
Mly113I GGCGCC 1 cut(s) 53
MnlI CCTC 3 cut(s) 10, 241, 252
MseI TTAA 1 cut(s) 358
MslI CAYNNNNRTG 1 cut(s) 95
MspI CCGG 4 cut(s) 50, 56, 221, 351
MspR9I CCNGG 1 cut(s) 351
MvnI CGCG 2 cut(s) 73, 166
MwoI GCNNNNNNNGC 1 cut(s) 300
NarI GGCGCC 1 cut(s) 53
NciI CCSGG 1 cut(s) 351
NdeII GATC 2 cut(s) 11, 171
NlaIII CATG 1 cut(s) 339
NlaIV GGNNCC 2 cut(s) 54, 228
NmuCI GTSAC 2 cut(s) 331, 339
PaqCI CACCTGC 1 cut(s) 70
PfeI GAWTC 2 cut(s) 46, 307
PflFI GACNNNGTC 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 4 cut(s) 210, 237, 240, 322
PluTI GGCGCC 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 54, 228
PspPI GGNCC 1 cut(s) 130
PsuI RGATCY 1 cut(s) 11
PsyI GACNNNGTC 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 4 cut(s) 209, 236, 239, 321
Sau3AI GATC 2 cut(s) 11, 171
Sau96I GGNCC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 351
SetI ASST 7 cut(s) 9, 33, 84, 110, 125, 156, 213
SfaNI GCATC 2 cut(s) 26, 169
SfoI GGCGCC 1 cut(s) 54
SgrAI CRCCGGYG 1 cut(s) 55
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 95
Sse9I AATT 1 cut(s) 259
SsiI CCGC 9 cut(s) 67, 73, 143, 164, 224, 236, 239, 252, 323
SspDI GGCGCC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 349
TaaI ACNGT 1 cut(s) 345
TaiI ACGT 2 cut(s) 9, 125
TaqI TCGA 1 cut(s) 104
TasI AATT 1 cut(s) 259
TauI GCSGC 2 cut(s) 238, 241
TfiI GAWTC 2 cut(s) 46, 307
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 2 cut(s) 331, 339
TseI GCWGC 2 cut(s) 208, 320
Tsp45I GTSAC 2 cut(s) 331, 339
TspDTI ATGAA 1 cut(s) 79
TspRI CASTG 1 cut(s) 348
Tth111I GACNNNGTC 1 cut(s) 337
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.