AT2G04395

positive regulation of DNA strand elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004123
Physical Location & Seq
Reverse (-)
1528927 .. 1529995
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04395.3

Sequence Viewer

Length: 435 bp
ATGGCGAAGAAGAGAGACAGTCCGAAGCTCATCAAAATCAAAGACGCCATTAAACTCATCAACCAAGAAGTCAGTCTCATTGGTATCGTCCTTGAACAAAGAGAACCAAAACAATGTCGCAACAATGATTGGATTTGTACTCTCCGGATAATTGATGATACGTATCCAAGTCCTGGACTTACTGTTAATGTATATAGTAGGACTCTTGAACAACTTCCTCAAATCAAGAACCACGACGACATGATTCTGTTTACTCGCATTAAGATGCAAACTTTTGATAGTGGAAAAAGAGTAAACGCTGCTTGTAGTAGATGGGTTTCTTCCTTTGCCTTGTTCGAAGGTGAGGATTTGATTCTCCATGCCGATGAAGATACGAGCGCTGTTTTTGTTTGGGACGGGACTGATGCACCCCCAGCATCTATTCTGGCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000217 GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003723 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005724 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0007004 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010521 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010638 GO:0010639 GO:0010833 GO:0016043 GO:0016233 GO:0017151 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0022607 GO:0030234 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031933 GO:0031974 GO:0031981 GO:0032200 GO:0032202 GO:0032204 GO:0032205 GO:0032206 GO:0032210 GO:0032211 GO:0032212 GO:0032356 GO:0032357 GO:0032392 GO:0032508 GO:0032991 GO:0032993 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0034502 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0042162 GO:0042592 GO:0043047 GO:0043085 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045184 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051054 GO:0051095 GO:0051096 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051276 GO:0051336 GO:0051338 GO:0051345 GO:0051347 GO:0051348 GO:0051641 GO:0051972 GO:0051973 GO:0051974 GO:0060249 GO:0060255 GO:0060382 GO:0060383 GO:0061820 GO:0061821 GO:0062037 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070187 GO:0070198 GO:0070199 GO:0070200 GO:0070727 GO:0071103 GO:0071704 GO:0071840 GO:0071897 GO:0072594 GO:0080090 GO:0090304 GO:0090657 GO:0097159 GO:0098505 GO:0098687 GO:0098772 GO:0098847 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1904356 GO:1904357 GO:1904358 GO:1905462 GO:1905464 GO:1905773 GO:1905774 GO:1905776 GO:1990955 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2000573 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
POT1 POT1PC

Protein Analysis

144

Amino Acids

16.33

Weight (kDa)

6.11

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POT1 PF02765 12 - 91 1.1e-19 Telomeric single stranded DNA binding POT1/CDC13
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 173
AccIII TCCGGA 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 1 cut(s) 139
AfeI AGCGCT 1 cut(s) 379
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 2 cut(s) 95, 209
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw26I GTCTC 2 cut(s) 9, 80
Aor13HI TCCGGA 1 cut(s) 144
Aor51HI AGCGCT 1 cut(s) 379
ApeKI GCWGC 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 213
AspLEI GCGC 1 cut(s) 380
AsuHPI GGTGA 1 cut(s) 353
AsuII TTCGAA 1 cut(s) 336
BbvI GCAGC 1 cut(s) 286
BccI CCATC 1 cut(s) 306
BciT130I CCWGG 1 cut(s) 174
BciVI GTATCC 1 cut(s) 174
BcoDI GTCTC 2 cut(s) 9, 80
BfoI RGCGCY 1 cut(s) 381
BfuI GTATCC 1 cut(s) 174
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme1390I CCNGG 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 3 cut(s) 255, 394, 425
Bpu14I TTCGAA 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 162
BseAI TCCGGA 1 cut(s) 144
BseBI CCWGG 1 cut(s) 174
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 286
BseYI CCCAGC 1 cut(s) 412
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 2 cut(s) 407, 412
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 2 cut(s) 9, 80
BsmFI GGGAC 2 cut(s) 407, 412
Bsp119I TTCGAA 1 cut(s) 336
Bsp13I TCCGGA 1 cut(s) 144
BspEI TCCGGA 1 cut(s) 144
BspT104I TTCGAA 1 cut(s) 336
BssNI GRCGYC 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 20, 184
Bst6I CTCTTC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 45
BstBAI YACGTR 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 429
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 1 cut(s) 380
BstMAI GTCTC 2 cut(s) 9, 80
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstSNI TACGTA 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 286
BsuI GTATCC 1 cut(s) 174
CfoI GCGC 1 cut(s) 380
CseI GACGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 138
CviAII CATG 2 cut(s) 241, 359
CviJI RGCY 2 cut(s) 28, 428
CviKI_1 RGCY 2 cut(s) 28, 428
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 1 cut(s) 429
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco105I TACGTA 1 cut(s) 162
Eco47III AGCGCT 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 172
FaeI CATG 2 cut(s) 244, 362
FaiI YATR 4 cut(s) 193, 195, 242, 360
FaqI GGGAC 2 cut(s) 407, 412
FatI CATG 2 cut(s) 240, 358
Fnu4HI GCNGC 1 cut(s) 300
Fsp4HI GCNGC 1 cut(s) 300
GlaI GCGC 1 cut(s) 379
GluI GCNGC 1 cut(s) 300
GsaI CCCAGC 1 cut(s) 416
HaeII RGCGCY 1 cut(s) 381
HapII CCGG 1 cut(s) 145
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 380
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 2 cut(s) 244, 362
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HinfI GANTC 3 cut(s) 202, 244, 352
HpaII CCGG 1 cut(s) 145
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 252, 295
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 3 cut(s) 145, 206, 226
Hpy8I GTNNAC 2 cut(s) 252, 295
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 2 cut(s) 20, 184
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 2 cut(s) 268, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 1 cut(s) 161
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 2 cut(s) 244, 362
HspAI GCGC 1 cut(s) 378
Kpn2I TCCGGA 1 cut(s) 144
LpnPI CCDG 5 cut(s) 158, 159, 186, 410, 426
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 3 cut(s) 255, 394, 425
MaeII ACGT 1 cut(s) 161
MboII GAAGA 4 cut(s) 19, 22, 312, 380
MluCI AATT 1 cut(s) 150
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 2 cut(s) 228, 337
MroI TCCGGA 1 cut(s) 144
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 3 cut(s) 51, 186, 261
MslI CAYNNNNRTG 2 cut(s) 263, 363
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 413
NlaIII CATG 2 cut(s) 244, 362
NspV TTCGAA 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 2 cut(s) 244, 352
PflMI CCANNNNNTGG 1 cut(s) 173
PfoI TCCNGGA 1 cut(s) 172
PkrI GCNGC 1 cut(s) 301
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Ppu21I YACGTR 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 412
PspGI CCWGG 1 cut(s) 172
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
RseI CAYNNNNRTG 2 cut(s) 263, 363
SaqAI TTAA 3 cut(s) 51, 186, 261
SatI GCNGC 1 cut(s) 300
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 174
SetI ASST 3 cut(s) 30, 164, 343
SfaNI GCATC 3 cut(s) 255, 394, 425
SfuI TTCGAA 1 cut(s) 336
SmiMI CAYNNNNRTG 2 cut(s) 263, 363
SnaBI TACGTA 1 cut(s) 162
Sse9I AATT 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 2 cut(s) 20, 184
TaiI ACGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 336
TasI AATT 1 cut(s) 150
TatI WGTACW 1 cut(s) 137
TfiI GAWTC 2 cut(s) 244, 352
Tru1I TTAA 3 cut(s) 51, 186, 261
Tru9I TTAA 3 cut(s) 51, 186, 261
TseI GCWGC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 381
Van91I CCANNNNNTGG 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.