Rh7BG014300

Protection of telomeres protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004123
Physical Location & Seq
Reverse (-)
915383 .. 919384
4002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG014300.1

Sequence Viewer

Length: 1332 bp
ATGACTTTTGTTGTGGCGATGATAAACGAAAGCCAGAGGTACAACATCGTAGATTGGTACAAAGATTGGTATTACTTCGTGAGGATAATTGATGAGACTTATCATGATATTGGGTTACCCGTTCATATATTCTTTGAAACTATGGATAGAAGTCCTCGTGTTTTGTCTCCTGGAGACATAATTCAATTTCAAAGTGTTACGGTGAAAGTTTTTGGAGATGAAGTGTCTGCAGTTTATAACAAGCAGTACTCTAGCTTTTCCCTGTATGACGGAAGAGATGGCAGTGTTCCTTATCAGACTTCTCAAAGATTCCGCGAAAGGGACCTAGACAAGAGATTTGTCACAGACTTGAGAAGATGGTTTCGGGATTTCCCTATTGATGAAGGCCCAAGTAATTTCTCTTTCGCGAGACAATTGACAGAGGGAGAGCATTTTAATTTGTTTTGTAAAGTACTTTATGTCTATGAAGGAGCTGGAAGTCAGTGGACAGCCTTTGTTTGGGATGGAAGTGATGCTCCTCCAGCCATAATTCACAAAAAGCTCTCAGAGGAGATGCACCAGCCATTAGCTCTACATTTGGAATCTTTTTCCTTAGCAAGAGATATTGTATGTAGCTTTCCAACTTTAGGAACCGTGTTAAGGGTGATATCTCAAGATATTGAGCCAGACTTCCTCCCTTTGTTGAGAACTGGCAACTGGGTAAAACTTACAAATTTGATGTGTGAATTGCATGATGGACTATGGCGTGTTGTGTTGACTCAGTACTCTAGGATTCATTATGCATCAAATGGGGATCAATTCAAACCTCAGCCACAAAGGTTATATGATGAGCGGTTGTTACGAAATCCTAGAAATTTGAGACGAATGCCACAATGGAGCTTACCTTGGCCTTCTCGAATTACAGAGGTTGATATTGATGATGATTGTGAATTTCGTACCTTAATGGATGTTGTCACGAGTACGGAGGTGATGGTTGGTTATAAGTGCGTTGTTCGTGTTGTATCGGTTTTGCCATGCCGGGCAATGGACTATCACTACCCTAATGGGGTCCTTAGAATTAGACTAACGTTAGAAGACCCAACTACCAGAATTCATGCCTTTTTGTATGCCGAAGATGGGTTGAAGTTTTTCAATGGACCTTCATCTGATGAGGTATTGAGTACAAAGCGAAATGCACTGGTAGGAGCTTCTGCAAATATTGATGGAGAGGAAGAAGAGGATACTCCTCGAAACCCACCTTGGGTGCAAGTTTGTTTAAGGGCGCAATATCAAATTGAAGGTGACTTAGAGAGTAGGGAGTACATAGTATTTGGCACGAAGCTTAGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0007004 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010521 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010638 GO:0010833 GO:0016043 GO:0016233 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030234 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0034641 GO:0034645 GO:0034654 GO:0042162 GO:0042592 GO:0043047 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:0098505 GO:0098687 GO:0098772 GO:0098847 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1904356 GO:1904358 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
POT1 POT1PC

Protein Analysis

443

Amino Acids

51.66

Weight (kDa)

5.28

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POT1 PF02765 21 - 121 4.1e-14 Telomeric single stranded DNA binding POT1/CDC13
OB_POT1A PF25507 296 - 426 1.2e-46 POT1A-like, OB fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 237, 981
AccBSI CCGCTC 1 cut(s) 832
AccII CGCG 2 cut(s) 315, 407
AciI CCGC 2 cut(s) 313, 832
AclI AACGTT 1 cut(s) 1067
AclWI GGATC 1 cut(s) 801
AcsI RAATTY 4 cut(s) 712, 853, 929, 1089
AfaI GTAC 9 cut(s) 41, 59, 248, 453, 764, 937, 961, 1162, 1301
AfiI CCNNNNNNNGG 8 cut(s) 319, 498, 626, 639, 1024, 1045, 1116, 1240
AgsI TTSAA 7 cut(s) 137, 185, 191, 802, 1123, 1132, 1277
AjnI CCWGG 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 1222, 1254
AluBI AGCT 8 cut(s) 255, 473, 541, 569, 615, 879, 1187, 1321
AluI AGCT 8 cut(s) 255, 473, 541, 569, 615, 879, 1187, 1321
Alw26I GTCTC 5 cut(s) 89, 168, 171, 403, 853
AlwI GGATC 1 cut(s) 801
AoxI GGCC 2 cut(s) 385, 887
ApoI RAATTY 4 cut(s) 712, 853, 929, 1089
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
Asp700I GAANNNNTTC 1 cut(s) 1127
AspLEI GCGC 1 cut(s) 1264
AspS9I GGNCC 4 cut(s) 322, 386, 1048, 1136
AsuC2I CCSGG 1 cut(s) 1019
AsuHPI GGTGA 4 cut(s) 214, 655, 979, 1292
AvaII GGWCC 3 cut(s) 322, 1048, 1136
BauI CACGAG 2 cut(s) 156, 955
BbsI GAAGAC 1 cut(s) 1080
BbvCI CCTCAGC 1 cut(s) 807
BccI CCATC 7 cut(s) 272, 351, 497, 728, 964, 1109, 1196
BciT130I CCWGG 1 cut(s) 171
BciVI GTATCC 1 cut(s) 1213
BcnI CCSGG 1 cut(s) 1019
BcoDI GTCTC 5 cut(s) 89, 168, 171, 403, 853
BfaI CTAG 4 cut(s) 252, 326, 768, 849
BfmI CTRYAG 1 cut(s) 228
BfuI GTATCC 1 cut(s) 1213
BmcAI AGTACT 3 cut(s) 248, 453, 764
Bme1390I CCNGG 2 cut(s) 171, 1019
Bme18I GGWCC 3 cut(s) 322, 1048, 1136
BmgT120I GGNCC 4 cut(s) 322, 386, 1048, 1136
BmiI GGNNCC 3 cut(s) 323, 631, 1049
BmrFI CCNGG 2 cut(s) 171, 1019
BmrI ACTGGG 1 cut(s) 706
BmsI GCATC 3 cut(s) 502, 543, 791
BmuI ACTGGG 1 cut(s) 706
BpiI GAAGAC 1 cut(s) 1080
BpmI CTGGAG 2 cut(s) 192, 504
Bpu10I CCTNAGC 2 cut(s) 592, 807
BpuEI CTTGAG 2 cut(s) 370, 636
BpuMI CCSGG 1 cut(s) 1019
BsaJI CCNNGG 2 cut(s) 884, 1238
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 8 cut(s) 319, 498, 626, 639, 1024, 1045, 1116, 1240
Bse1I ACTGG 3 cut(s) 694, 701, 1182
Bse3DI GCAATG 1 cut(s) 1029
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 884, 1238
BseGI GGATG 2 cut(s) 508, 952
BseLI CCNNNNNNNGG 8 cut(s) 319, 498, 626, 639, 1024, 1045, 1116, 1240
BseMI GCAATG 1 cut(s) 1029
BseMII CTCAG 3 cut(s) 558, 773, 821
BseNI ACTGG 3 cut(s) 694, 701, 1182
BseRI GAGGAG 3 cut(s) 507, 563, 1215
Bsh1236I CGCG 2 cut(s) 315, 407
BshFI GGCC 2 cut(s) 387, 889
BsiSI CCGG 1 cut(s) 1018
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 8 cut(s) 319, 498, 626, 639, 1024, 1045, 1116, 1240
BsmAI GTCTC 5 cut(s) 89, 168, 171, 403, 853
BsmBI CGTCTC 1 cut(s) 853
BsmFI GGGAC 1 cut(s) 335
BsmI GAATGC 1 cut(s) 870
BsnI GGCC 2 cut(s) 387, 889
Bsp143I GATC 1 cut(s) 793
Bsp68I TCGCGA 1 cut(s) 407
BspACI CCGC 2 cut(s) 313, 832
BspANI GGCC 2 cut(s) 387, 889
BspCNI CTCAG 3 cut(s) 557, 772, 820
BspFNI CGCG 2 cut(s) 315, 407
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 3 cut(s) 323, 631, 1049
BspMAI CTGCAG 1 cut(s) 232
BspPI GGATC 1 cut(s) 801
BsrBI CCGCTC 1 cut(s) 832
BsrDI GCAATG 1 cut(s) 1029
BsrI ACTGG 3 cut(s) 694, 701, 1182
BssECI CCNNGG 2 cut(s) 884, 1238
BssMI GATC 1 cut(s) 793
BssSI CACGAG 2 cut(s) 156, 955
BssT1I CCWWGG 2 cut(s) 884, 1238
Bst2BI CACGAG 2 cut(s) 156, 955
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 202, 634
Bst6I CTCTTC 2 cut(s) 268, 1209
BstDEI CTNAG 7 cut(s) 544, 592, 759, 807, 1052, 1285, 1322
BstEII GGTNACC 1 cut(s) 114
BstF5I GGATG 2 cut(s) 508, 952
BstFNI CGCG 2 cut(s) 315, 407
BstHHI GCGC 1 cut(s) 1264
BstKTI GATC 1 cut(s) 796
BstMAI GTCTC 5 cut(s) 89, 168, 171, 403, 853
BstMBI GATC 1 cut(s) 793
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstNI CCWGG 1 cut(s) 171
BstPI GGTNACC 1 cut(s) 114
BstSCI CCNGG 2 cut(s) 169, 1017
BstSFI CTRYAG 1 cut(s) 228
BstUI CGCG 2 cut(s) 315, 407
BstV2I GAAGAC 1 cut(s) 1080
BsuI GTATCC 1 cut(s) 1213
BsuRI GGCC 2 cut(s) 387, 889
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 2 cut(s) 508, 952
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 3 cut(s) 289, 488, 1175
BtuMI TCGCGA 1 cut(s) 407
CciI TCATGA 1 cut(s) 103
CfoI GCGC 1 cut(s) 1264
Cfr13I GGNCC 4 cut(s) 322, 386, 1048, 1136
Csp6I GTAC 9 cut(s) 40, 58, 247, 452, 763, 936, 960, 1161, 1300
CviAII CATG 4 cut(s) 104, 731, 1014, 1094
CviQI GTAC 9 cut(s) 40, 58, 247, 452, 763, 936, 960, 1161, 1300
DdeI CTNAG 7 cut(s) 544, 592, 759, 807, 1052, 1285, 1322
DpnI GATC 1 cut(s) 795
DpnII GATC 1 cut(s) 793
Eam1104I CTCTTC 2 cut(s) 268, 1209
EarI CTCTTC 2 cut(s) 268, 1209
Eco130I CCWWGG 2 cut(s) 884, 1238
Eco32I GATATC 1 cut(s) 648
Eco47I GGWCC 3 cut(s) 322, 1048, 1136
Eco91I GGTNACC 1 cut(s) 114
EcoO109I RGGNCCY 2 cut(s) 322, 1048
EcoO65I GGTNACC 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 1089
EcoRII CCWGG 1 cut(s) 169
EcoRV GATATC 1 cut(s) 648
EcoT14I CCWWGG 2 cut(s) 884, 1238
EcoT22I ATGCAT 1 cut(s) 784
ErhI CCWWGG 2 cut(s) 884, 1238
Esp3I CGTCTC 1 cut(s) 853
FaeI CATG 4 cut(s) 107, 734, 1017, 1097
FaqI GGGAC 1 cut(s) 335
FatI CATG 4 cut(s) 103, 730, 1013, 1093
FokI GGATG 2 cut(s) 515, 959
FspBI CTAG 4 cut(s) 252, 326, 768, 849
GlaI GCGC 1 cut(s) 1263
GsuI CTGGAG 2 cut(s) 192, 504
HaeIII GGCC 2 cut(s) 387, 889
HapII CCGG 1 cut(s) 1018
HhaI GCGC 1 cut(s) 1264
Hin1II CATG 4 cut(s) 107, 734, 1017, 1097
Hin6I GCGC 1 cut(s) 1262
HinP1I GCGC 1 cut(s) 1262
HincII GTYRAC 1 cut(s) 756
HindII GTYRAC 1 cut(s) 756
HindIII AAGCTT 1 cut(s) 1319
HinfI GANTC 4 cut(s) 309, 581, 757, 772
HpaII CCGG 1 cut(s) 1018
HphI GGTGA 4 cut(s) 214, 655, 979, 1292
Hpy166II GTNNAC 2 cut(s) 486, 756
Hpy188I TCNGA 3 cut(s) 297, 547, 1147
Hpy188III TCNNGA 7 cut(s) 79, 104, 365, 406, 653, 894, 955
Hpy8I GTNNAC 2 cut(s) 486, 756
HpyAV CCTTC 5 cut(s) 377, 461, 900, 1149, 1271
HpyCH4III ACNGT 2 cut(s) 202, 634
HpyCH4IV ACGT 1 cut(s) 1067
HpyCH4V TGCA 7 cut(s) 230, 556, 730, 782, 1175, 1193, 1246
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 7 cut(s) 544, 592, 759, 807, 1052, 1285, 1322
HpySE526I ACGT 1 cut(s) 1067
Hsp92II CATG 4 cut(s) 107, 734, 1017, 1097
HspAI GCGC 1 cut(s) 1262
Kzo9I GATC 1 cut(s) 793
LmnI GCTCC 4 cut(s) 470, 520, 876, 1184
LweI GCATC 3 cut(s) 502, 543, 791
MaeI CTAG 4 cut(s) 252, 326, 768, 849
MaeII ACGT 1 cut(s) 1067
MaeIII GTNAC 6 cut(s) 114, 196, 340, 837, 952, 1280
MalI GATC 1 cut(s) 795
MbiI CCGCTC 1 cut(s) 832
MboI GATC 1 cut(s) 793
MboII GAAGA 6 cut(s) 285, 366, 1085, 1124, 1223, 1226
MfeI CAATTG 1 cut(s) 413
MlyI GAGTC 1 cut(s) 751
MmeI TCCRAC 1 cut(s) 644
Mph1103I ATGCAT 1 cut(s) 784
MroXI GAANNNNTTC 1 cut(s) 1127
MseI TTAA 4 cut(s) 435, 638, 941, 1256
MspI CCGG 1 cut(s) 1018
MspR9I CCNGG 2 cut(s) 171, 1019
MunI CAATTG 1 cut(s) 413
Mva1269I GAATGC 1 cut(s) 870
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 2 cut(s) 315, 407
MwoI GCNNNNNNNGC 1 cut(s) 521
NciI CCSGG 1 cut(s) 1019
NdeII GATC 1 cut(s) 793
NlaIII CATG 4 cut(s) 107, 734, 1017, 1097
NlaIV GGNNCC 3 cut(s) 323, 631, 1049
NmuCI GTSAC 3 cut(s) 340, 952, 1280
NruI TCGCGA 1 cut(s) 407
NsiI ATGCAT 1 cut(s) 784
PagI TCATGA 1 cut(s) 103
PctI GAATGC 1 cut(s) 870
PdmI GAANNNNTTC 1 cut(s) 1127
PfeI GAWTC 3 cut(s) 309, 581, 772
PfoI TCCNGGA 1 cut(s) 169
PleI GAGTC 1 cut(s) 751
PpsI GAGTC 1 cut(s) 751
PpuMI RGGWCCY 2 cut(s) 322, 1048
PsiI TTATAA 2 cut(s) 237, 981
Psp1406I AACGTT 1 cut(s) 1067
Psp5II RGGWCCY 2 cut(s) 322, 1048
Psp6I CCWGG 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 114
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 323, 631, 1049
PspPI GGNCC 4 cut(s) 322, 386, 1048, 1136
PspPPI RGGWCCY 2 cut(s) 322, 1048
PstI CTGCAG 1 cut(s) 232
RruI TCGCGA 1 cut(s) 407
RsaI GTAC 9 cut(s) 41, 59, 248, 453, 764, 937, 961, 1162, 1301
RsaNI GTAC 9 cut(s) 40, 58, 247, 452, 763, 936, 960, 1161, 1300
SaqAI TTAA 4 cut(s) 435, 638, 941, 1256
Sau3AI GATC 1 cut(s) 793
Sau96I GGNCC 4 cut(s) 322, 386, 1048, 1136
ScaI AGTACT 3 cut(s) 248, 453, 764
SchI GAGTC 1 cut(s) 751
ScrFI CCNGG 2 cut(s) 171, 1019
SfaNI GCATC 3 cut(s) 502, 543, 791
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 3 cut(s) 322, 1048, 1136
SmlI CTYRAG 2 cut(s) 349, 651
SmoI CTYRAG 2 cut(s) 349, 651
SsiI CCGC 2 cut(s) 313, 832
SspI AATATT 1 cut(s) 1198
SspMI CTAG 4 cut(s) 252, 326, 768, 849
StyD4I CCNGG 2 cut(s) 169, 1017
StyI CCWWGG 2 cut(s) 884, 1238
TaaI ACNGT 2 cut(s) 202, 634
TaiI ACGT 1 cut(s) 1070
TaqI TCGA 2 cut(s) 895, 1228
TatI WGTACW 5 cut(s) 246, 451, 762, 1160, 1299
TfiI GAWTC 3 cut(s) 309, 581, 772
Tru1I TTAA 4 cut(s) 435, 638, 941, 1256
Tru9I TTAA 4 cut(s) 435, 638, 941, 1256
TscAI CASTG 3 cut(s) 289, 488, 1182
TseFI GTSAC 3 cut(s) 340, 952, 1280
Tsp45I GTSAC 3 cut(s) 340, 952, 1280
TspDTI ATGAA 7 cut(s) 113, 234, 396, 480, 764, 1082, 1131
TspGWI ACGGA 2 cut(s) 285, 977
TspRI CASTG 3 cut(s) 289, 488, 1182
VpaK11BI GGWCC 3 cut(s) 322, 1048, 1136
XapI RAATTY 4 cut(s) 712, 853, 929, 1089
XmnI GAANNNNTTC 1 cut(s) 1127
XspI CTAG 4 cut(s) 252, 326, 768, 849
ZrmI AGTACT 3 cut(s) 248, 453, 764
Zsp2I ATGCAT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.