AT5G06310

Protection of telomeres protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004123
Physical Location & Seq
Forward (+)
1928343 .. 1930951
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06310.1

Sequence Viewer

Length: 1365 bp
ATGGAGGAGGAGAGAAGAGATGACTACAAATTCCTGAGAATTCAAGACGCTTTCAAAGCATTGCATCTTCATGTTAACCTCATTGGAGTCATCGTTGAGCTAGGATTCTCCAATGGCTCTGATTGTTCATGTACGCTCAAAATCGTTGATCCATGGTATTCGGGATCTGGCCTTCCCGTTAAGTTCGTCGCTCGTACCATTCGAGACCTTCCTCGTGTTGAATCGATCGGAGATATCATCTTACTTTCACGTGTAAAGATTGTGCTGATTAACCGGAAAATCACAGCTCTCTGCAATGAAACAACCTCTTCGTCTTTTGCTTTATTCAATGGGAAACATAGCGTGGATTCTATACCTTACCAGTCCTCACCTAAATTCCTGATGAGAGAACAGGATAAGAACTTCTTATCGAATCTGAGAGAATGGATGATCACGTACAAGTTTGAAGATGGGTCATGCTGTTTCACATCCCTGAAAGATATCAAAGAAGGCGAATGTTCAAACCTATCTTGCCAGATTGTTCACATTTCCAAGGTCTATAAAGATAGATGGTACCTCTTTGTTTGGGATGGAACTGAGATGCCACCCTGCAACATCTTGGTTAAGTCAGAAAGGCTTCCTTTATGTGTAGAACCCGAGATGTTGCCTACATACATGTTACGTAAGTTTCCTACTTTTGGTTCCGTTTTGAGGATCATAGTAGATAGAGTTAGTGAGAAGCAGGCCATTCACTGTCTTCAACCTGGTCAACACGTGAAGCTTCTGAACCTTTTCTTTCAAGTAAATATGGGATTATGGAACGCCACTTTTACTCCCTCTACAAAGATGCAGTACACAATGAGCAGAGAGATGGAAGCCTTTAGTCCTCAAAGAATGTGTGGGGAGAAGTTTTCACCGAGATGGAACCCAATCGCGCGTTGCATTAGTCGTTCACATTCTGAAATCACAGGGGTTGCCCATGACGATGCTCCATTTGTTTCTCTGATGGACATCCTGACCTATCACAATGTGACTGCTAAATTCAGGTGTGTTGTTCGGTTCATACAAGTGTATCCCCGAGACGTCAGAAAACTCCGTGATATCAACGGAAATATCAAATTGGTAGCTATACTAGAAGATGCAACCGCCAGAATCCATGCTTCTCTATATGCTGATGAAGGGGAAAAGTTTTTCGGGTGTGACGAATCTGATGAAGAGGCTCTAGTCAAGAAGCTGAATAGATTGTTGGGAGGTGAAGAGATGGAGAAAGTGCCAAGAAATCCTCCATGGGTACAATGTTGCTTGTTCTCATTCTACAAACACAAAATGGATCAGTGGGAAAGCAGAAGATTCCGCATTTTTGATACTTGGATCAATGCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0007004 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010521 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010638 GO:0010833 GO:0016043 GO:0016233 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030234 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0034641 GO:0034645 GO:0034654 GO:0042162 GO:0042592 GO:0043047 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:0098505 GO:0098687 GO:0098772 GO:0098847 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1904356 GO:1904358 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
POT1 POT1PC

Protein Analysis

454

Amino Acids

52.57

Weight (kDa)

8.38

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POT1 PF02765 11 - 143 4.3e-33 Telomeric single stranded DNA binding POT1/CDC13
OB_POT1A PF25507 312 - 437 2.1e-50 POT1A-like, OB fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1065
Acc65I GGTACC 1 cut(s) 552
AccB1I GGYRCC 1 cut(s) 552
AccII CGCG 2 cut(s) 914, 916
AciI CCGC 2 cut(s) 1125, 1333
AclWI GGATC 5 cut(s) 143, 172, 701, 1317, 1358
AcsI RAATTY 4 cut(s) 29, 39, 374, 1019
AcvI CACGTG 2 cut(s) 251, 754
AcyI GRCGYC 1 cut(s) 1062
AdeI CACNNNGTG 1 cut(s) 1009
AfaI GTAC 6 cut(s) 133, 196, 437, 554, 833, 1272
AfiI CCNNNNNNNGG 2 cut(s) 677, 690
AflIII ACRYGT 3 cut(s) 250, 654, 751
AgsI TTSAA 8 cut(s) 44, 55, 221, 328, 446, 501, 740, 779
AjnI CCWGG 1 cut(s) 742
AjuI GAANNNNNNNTTGG 2 cut(s) 1208, 1240
AluBI AGCT 5 cut(s) 100, 287, 760, 1106, 1213
AluI AGCT 5 cut(s) 100, 287, 760, 1106, 1213
Alw26I GTCTC 2 cut(s) 198, 1053
AlwI GGATC 5 cut(s) 143, 172, 701, 1317, 1358
Ama87I CYCGRG 2 cut(s) 635, 1056
AoxI GGCC 2 cut(s) 169, 723
ApoI RAATTY 4 cut(s) 29, 39, 374, 1019
Asp700I GAANNNNTTC 2 cut(s) 615, 770
Asp718I GGTACC 1 cut(s) 552
AspLEI GCGC 1 cut(s) 916
AsuHPI GGTGA 3 cut(s) 360, 885, 1244
AvaI CYCGRG 2 cut(s) 635, 1056
BaeI ACNNNNGTAYC 2 cut(s) 1034, 1067
BanI GGYRCC 1 cut(s) 552
BauI CACGAG 1 cut(s) 213
BbrPI CACGTG 2 cut(s) 251, 754
BbsI GAAGAC 1 cut(s) 728
BccI CCATC 7 cut(s) 443, 543, 563, 844, 894, 979, 1234
BciT130I CCWGG 1 cut(s) 744
BciVI GTATCC 1 cut(s) 1062
BclI TGATCA 1 cut(s) 429
BcoDI GTCTC 2 cut(s) 198, 1053
BfaI CTAG 3 cut(s) 101, 1112, 1202
BfuI GTATCC 1 cut(s) 1062
Bme1390I CCNGG 1 cut(s) 744
BmeT110I CYCGRG 2 cut(s) 635, 1056
BmiI GGNNCC 3 cut(s) 554, 682, 905
BmrFI CCNGG 1 cut(s) 744
BmsI GCATC 5 cut(s) 73, 570, 816, 955, 1108
BpiI GAAGAC 1 cut(s) 728
Bsa29I ATCGAT 1 cut(s) 224
BsaAI YACGTR 4 cut(s) 251, 435, 662, 754
BsaBI GATNNNNATC 1 cut(s) 989
BsaHI GRCGYC 1 cut(s) 1062
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 3 cut(s) 152, 531, 1265
BsaWI WCCGGW 1 cut(s) 273
BsaXI ACNNNNNCTCC 4 cut(s) 78, 108, 796, 826
Bsc4I CCNNNNNNNGG 2 cut(s) 677, 690
Bse1I ACTGG 1 cut(s) 361
Bse3DI GCAATG 2 cut(s) 59, 301
Bse8I GATNNNNATC 1 cut(s) 989
BseBI CCWGG 1 cut(s) 744
BseCI ATCGAT 1 cut(s) 224
BseDI CCNNGG 3 cut(s) 152, 531, 1265
BseGI GGATG 4 cut(s) 432, 467, 574, 990
BseJI GATNNNNATC 1 cut(s) 989
BseLI CCNNNNNNNGG 2 cut(s) 677, 690
BseMI GCAATG 2 cut(s) 59, 301
BseMII CTCAG 3 cut(s) 26, 407, 567
BseNI ACTGG 1 cut(s) 361
BseRI GAGGAG 2 cut(s) 20, 23
Bsh1236I CGCG 2 cut(s) 914, 916
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 2 cut(s) 171, 725
BshNI GGYRCC 1 cut(s) 552
BshVI ATCGAT 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 228
BsiHKCI CYCGRG 2 cut(s) 635, 1056
BsiSI CCGG 1 cut(s) 274
BslI CCNNNNNNNGG 2 cut(s) 677, 690
BsmAI GTCTC 2 cut(s) 198, 1053
BsmBI CGTCTC 1 cut(s) 1053
BsnI GGCC 2 cut(s) 171, 725
Bso31I GGTCTC 1 cut(s) 198
BsoBI CYCGRG 2 cut(s) 635, 1056
Bsp143I GATC 7 cut(s) 148, 164, 225, 429, 693, 1309, 1350
Bsp19I CCATGG 2 cut(s) 152, 1265
BspACI CCGC 2 cut(s) 1125, 1333
BspANI GGCC 2 cut(s) 171, 725
BspCNI CTCAG 3 cut(s) 27, 408, 568
BspDI ATCGAT 1 cut(s) 224
BspFNI CGCG 2 cut(s) 914, 916
BspHI TCATGA 1 cut(s) 1361
BspLI GGNNCC 3 cut(s) 554, 682, 905
BspPI GGATC 5 cut(s) 143, 172, 701, 1317, 1358
BspT107I GGYRCC 1 cut(s) 552
BspTNI GGTCTC 1 cut(s) 198
BsrDI GCAATG 2 cut(s) 59, 301
BsrI ACTGG 1 cut(s) 361
BssECI CCNNGG 3 cut(s) 152, 531, 1265
BssMI GATC 7 cut(s) 148, 164, 225, 429, 693, 1309, 1350
BssNI GRCGYC 1 cut(s) 1062
BssSI CACGAG 1 cut(s) 213
BssT1I CCWWGG 3 cut(s) 152, 531, 1265
Bst2BI CACGAG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 1 cut(s) 734
Bst6I CTCTTC 4 cut(s) 10, 313, 1188, 1230
BstACI GRCGYC 1 cut(s) 1062
BstBAI YACGTR 4 cut(s) 251, 435, 662, 754
BstC8I GCNNGC 1 cut(s) 723
BstDEI CTNAG 3 cut(s) 35, 416, 576
BstDSI CCRYGG 2 cut(s) 152, 1265
BstF5I GGATG 4 cut(s) 432, 467, 574, 990
BstFNI CGCG 2 cut(s) 914, 916
BstHHI GCGC 1 cut(s) 916
BstKTI GATC 7 cut(s) 151, 167, 228, 432, 696, 1312, 1353
BstMAI GTCTC 2 cut(s) 198, 1053
BstMBI GATC 7 cut(s) 148, 164, 225, 429, 693, 1309, 1350
BstMCI CGRYCG 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 1 cut(s) 744
BstNSI RCATGY 1 cut(s) 658
BstSCI CCNGG 1 cut(s) 742
BstSNI TACGTA 1 cut(s) 662
BstUI CGCG 2 cut(s) 914, 916
BstV2I GAAGAC 1 cut(s) 728
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
Bsu15I ATCGAT 1 cut(s) 224
BsuI GTATCC 1 cut(s) 1062
BsuRI GGCC 2 cut(s) 171, 725
BsuTUI ATCGAT 1 cut(s) 224
BtgI CCRYGG 2 cut(s) 152, 1265
BtsCI GGATG 4 cut(s) 432, 467, 574, 990
BtsIMutI CAGTG 2 cut(s) 730, 1319
Cac8I GCNNGC 1 cut(s) 723
CciI TCATGA 1 cut(s) 1361
CfoI GCGC 1 cut(s) 916
ClaI ATCGAT 1 cut(s) 224
CseI GACGC 1 cut(s) 56
CsiI ACCWGGT 1 cut(s) 742
Csp6I GTAC 6 cut(s) 132, 195, 436, 553, 832, 1271
CviAII CATG 9 cut(s) 71, 129, 153, 456, 655, 959, 1136, 1266, 1362
CviQI GTAC 6 cut(s) 132, 195, 436, 553, 832, 1271
DdeI CTNAG 3 cut(s) 35, 416, 576
DpnI GATC 7 cut(s) 150, 166, 227, 431, 695, 1311, 1352
DpnII GATC 7 cut(s) 148, 164, 225, 429, 693, 1309, 1350
DraIII CACNNNGTG 1 cut(s) 1009
Eam1104I CTCTTC 4 cut(s) 10, 313, 1188, 1230
EarI CTCTTC 4 cut(s) 10, 313, 1188, 1230
Eco105I TACGTA 1 cut(s) 662
Eco130I CCWWGG 3 cut(s) 152, 531, 1265
Eco31I GGTCTC 1 cut(s) 198
Eco32I GATATC 3 cut(s) 235, 481, 1081
Eco72I CACGTG 2 cut(s) 251, 754
Eco88I CYCGRG 2 cut(s) 635, 1056
EcoRI GAATTC 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 742
EcoRV GATATC 3 cut(s) 235, 481, 1081
EcoT14I CCWWGG 3 cut(s) 152, 531, 1265
ErhI CCWWGG 3 cut(s) 152, 531, 1265
Esp3I CGTCTC 1 cut(s) 1053
FaeI CATG 9 cut(s) 74, 132, 156, 459, 658, 962, 1139, 1269, 1365
FalI AAGNNNNNCTT 4 cut(s) 389, 421, 604, 636
FatI CATG 9 cut(s) 70, 128, 152, 455, 654, 958, 1135, 1265, 1361
FbaI TGATCA 1 cut(s) 429
FokI GGATG 4 cut(s) 439, 454, 581, 977
FspBI CTAG 3 cut(s) 101, 1112, 1202
GlaI GCGC 1 cut(s) 915
HaeIII GGCC 2 cut(s) 171, 725
HapII CCGG 1 cut(s) 274
HgaI GACGC 1 cut(s) 56
HhaI GCGC 1 cut(s) 916
Hin1I GRCGYC 1 cut(s) 1062
Hin1II CATG 9 cut(s) 74, 132, 156, 459, 658, 962, 1139, 1269, 1365
Hin6I GCGC 1 cut(s) 914
HinP1I GCGC 1 cut(s) 914
HincII GTYRAC 2 cut(s) 76, 749
HindII GTYRAC 2 cut(s) 76, 749
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 8 cut(s) 87, 105, 221, 347, 412, 1131, 1184, 1329
HpaI GTTAAC 1 cut(s) 76
HpaII CCGG 1 cut(s) 274
HphI GGTGA 3 cut(s) 360, 885, 1244
Hpy166II GTNNAC 5 cut(s) 76, 523, 749, 834, 932
Hpy188I TCNGA 9 cut(s) 121, 230, 417, 610, 765, 940, 984, 1067, 1189
Hpy188III TCNNGA 8 cut(s) 34, 44, 162, 203, 379, 994, 1207, 1362
Hpy8I GTNNAC 5 cut(s) 76, 523, 749, 834, 932
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 4 cut(s) 182, 218, 482, 1151
HpyCH4III ACNGT 1 cut(s) 734
HpyCH4IV ACGT 5 cut(s) 250, 434, 661, 753, 1062
HpyCH4V TGCA 6 cut(s) 64, 294, 591, 829, 921, 1121
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 3 cut(s) 35, 416, 576
HpySE526I ACGT 5 cut(s) 250, 434, 661, 753, 1062
Hsp92I GRCGYC 1 cut(s) 1062
Hsp92II CATG 9 cut(s) 74, 132, 156, 459, 658, 962, 1139, 1269, 1365
HspAI GCGC 1 cut(s) 914
KpnI GGTACC 1 cut(s) 556
Ksp22I TGATCA 1 cut(s) 429
KspAI GTTAAC 1 cut(s) 76
Kzo9I GATC 7 cut(s) 148, 164, 225, 429, 693, 1309, 1350
LmnI GCTCC 1 cut(s) 973
LweI GCATC 5 cut(s) 73, 570, 816, 955, 1108
MabI ACCWGGT 1 cut(s) 742
MaeI CTAG 3 cut(s) 101, 1112, 1202
MaeII ACGT 5 cut(s) 250, 434, 661, 753, 1062
MaeIII GTNAC 3 cut(s) 657, 1009, 1178
MalI GATC 7 cut(s) 150, 166, 227, 431, 695, 1311, 1352
MboI GATC 7 cut(s) 148, 164, 225, 429, 693, 1309, 1350
MboII GAAGA 9 cut(s) 27, 59, 300, 458, 728, 1127, 1205, 1247, 1338
MflI RGATCY 1 cut(s) 164
MluCI AATT 5 cut(s) 29, 39, 374, 1019, 1097
MlyI GAGTC 1 cut(s) 96
MroXI GAANNNNTTC 2 cut(s) 615, 770
MseI TTAA 4 cut(s) 75, 180, 270, 603
MslI CAYNNNNRTG 4 cut(s) 69, 898, 963, 1046
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 744
MvaI CCWGG 1 cut(s) 744
MvnI CGCG 2 cut(s) 914, 916
MwoI GCNNNNNNNGC 1 cut(s) 56
NcoI CCATGG 2 cut(s) 152, 1265
NdeII GATC 7 cut(s) 148, 164, 225, 429, 693, 1309, 1350
NlaIII CATG 9 cut(s) 74, 132, 156, 459, 658, 962, 1139, 1269, 1365
NlaIV GGNNCC 3 cut(s) 554, 682, 905
NmuCI GTSAC 2 cut(s) 1009, 1178
NspI RCATGY 1 cut(s) 658
PagI TCATGA 1 cut(s) 1361
PciI ACATGT 1 cut(s) 654
PcsI WCGNNNNNNNCGW 2 cut(s) 199, 1179
PdmI GAANNNNTTC 2 cut(s) 615, 770
PfeI GAWTC 7 cut(s) 105, 221, 347, 412, 1131, 1184, 1329
Ple19I CGATCG 1 cut(s) 228
PleI GAGTC 1 cut(s) 95
PmaCI CACGTG 2 cut(s) 251, 754
PmlI CACGTG 2 cut(s) 251, 754
PpsI GAGTC 1 cut(s) 95
Ppu21I YACGTR 4 cut(s) 251, 435, 662, 754
PscI ACATGT 1 cut(s) 654
Psp6I CCWGG 1 cut(s) 742
PspCI CACGTG 2 cut(s) 251, 754
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 3 cut(s) 554, 682, 905
PsuI RGATCY 1 cut(s) 164
PvuI CGATCG 1 cut(s) 228
RsaI GTAC 6 cut(s) 133, 196, 437, 554, 833, 1272
RsaNI GTAC 6 cut(s) 132, 195, 436, 553, 832, 1271
RseI CAYNNNNRTG 4 cut(s) 69, 898, 963, 1046
SaqAI TTAA 4 cut(s) 75, 180, 270, 603
Sau3AI GATC 7 cut(s) 148, 164, 225, 429, 693, 1309, 1350
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 744
SexAI ACCWGGT 1 cut(s) 742
SfaNI GCATC 5 cut(s) 73, 570, 816, 955, 1108
SmiMI CAYNNNNRTG 4 cut(s) 69, 898, 963, 1046
SnaBI TACGTA 1 cut(s) 662
Sse9I AATT 5 cut(s) 29, 39, 374, 1019, 1097
SsiI CCGC 2 cut(s) 1125, 1333
SspMI CTAG 3 cut(s) 101, 1112, 1202
StyD4I CCNGG 1 cut(s) 742
StyI CCWWGG 3 cut(s) 152, 531, 1265
TaaI ACNGT 1 cut(s) 734
TaiI ACGT 5 cut(s) 253, 437, 664, 756, 1065
TaqI TCGA 3 cut(s) 202, 224, 410
TasI AATT 5 cut(s) 29, 39, 374, 1019, 1097
TatI WGTACW 1 cut(s) 831
TfiI GAWTC 7 cut(s) 105, 221, 347, 412, 1131, 1184, 1329
Tru1I TTAA 4 cut(s) 75, 180, 270, 603
Tru9I TTAA 4 cut(s) 75, 180, 270, 603
TscAI CASTG 2 cut(s) 737, 1319
TseFI GTSAC 2 cut(s) 1009, 1178
Tsp45I GTSAC 2 cut(s) 1009, 1178
TspDTI ATGAA 7 cut(s) 59, 117, 312, 1030, 1170, 1206, 1350
TspGWI ACGGA 3 cut(s) 673, 1064, 1101
TspRI CASTG 2 cut(s) 737, 1319
XapI RAATTY 4 cut(s) 29, 39, 374, 1019
XceI RCATGY 1 cut(s) 658
XmnI GAANNNNTTC 2 cut(s) 615, 770
XspI CTAG 3 cut(s) 101, 1112, 1202
ZraI GACGTC 1 cut(s) 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.