Rorug06G0416100

Protection of telomeres protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004123
Physical Location & Seq
Reverse (-)
55556538 .. 55558912
2375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0416100.1

Sequence Viewer

Length: 579 bp
ATGGAAGGAGTGGCAAGTGATGCAGGCTCAGCAGTGGCGCCTCTTGCCAAGTGGAGGGATGAGTTTGCGAGGACGTTTCAGTACTATTTGGACCGTTCGACTCCTAATCCGGTCCATAGGTGGCTGGGAACACTTGCTGTGGCTGCGATTTATCTGTTGCGACTTTACTTGGTTCAGGGGTTTTACATTGTCTCATACGGCCTGGGAATTTATATCTTGAATCTGTTGATTGGGTTTCTCTCGCCAAAGGTTGATCCGGAGCTTGAGGCCTTGGATGGGGCAGCATTGCCAACGAGAGGCTCAGATGAGTTTAAACCATTCATCCGCCGCCTTCCTGAGTTCAAGTTCTGGTATTCCATTACAAAGGCTTTCTGTGTCGCCTTTCTGATGACCTTCTTTTCTGTATTTGATGTCCCTGTTTTCTGGCCCATACTCCTCTGTTATTGGATTGTTCTTTTTGTCCTTACAATGAAGCGCCAAATCATGCACATGATCAAGTACAAGTATGTTCCATTCAGCATTGGAAAGCAGAGGTATGTAGGGAAGCCTGCTGCAAGTAGTAGTGGCTCCGCGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0007004 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010521 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010638 GO:0010833 GO:0016043 GO:0016233 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030234 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0034641 GO:0034645 GO:0034654 GO:0042162 GO:0042592 GO:0043047 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:0098505 GO:0098687 GO:0098772 GO:0098847 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1904356 GO:1904358 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
POT1 POT1PC

Protein Analysis

192

Amino Acids

21.91

Weight (kDa)

9.3

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 18 - 179 9.5e-76 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AccII CGCG 1 cut(s) 572
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 4 cut(s) 325, 328, 570, 572
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 207
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 2 cut(s) 83, 500
AfiI CCNNNNNNNGG 3 cut(s) 54, 276, 296
AgsI TTSAA 2 cut(s) 220, 343
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 1 cut(s) 248
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 3 cut(s) 199, 267, 425
ApeKI GCWGC 3 cut(s) 143, 281, 551
ApoI RAATTY 1 cut(s) 207
AspLEI GCGC 2 cut(s) 40, 477
AspS9I GGNCC 3 cut(s) 91, 112, 426
AvaII GGWCC 2 cut(s) 91, 112
BanI GGYRCC 1 cut(s) 37
BbvI GCAGC 3 cut(s) 130, 293, 538
BccI CCATC 1 cut(s) 269
BceAI ACGGC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 203
BclI TGATCA 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 196
BfoI RGCGCY 2 cut(s) 41, 478
BisI GCNGC 4 cut(s) 144, 282, 328, 552
BlpI GCTNAGC 1 cut(s) 28
BlsI GCNGC 4 cut(s) 145, 283, 329, 553
BmcAI AGTACT 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 2 cut(s) 91, 112
BmgT120I GGNCC 3 cut(s) 91, 112, 426
BmiI GGNNCC 2 cut(s) 39, 568
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 10
Bpu1102I GCTNAGC 1 cut(s) 28
BpuEI CTTGAG 1 cut(s) 284
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 202, 270, 570
BsaWI WCCGGW 2 cut(s) 109, 256
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 276, 296
Bse3DI GCAATG 1 cut(s) 284
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 3 cut(s) 202, 270, 570
BseGI GGATG 3 cut(s) 64, 280, 321
BseLI CCNNNNNNNGG 3 cut(s) 54, 276, 296
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 3 cut(s) 42, 315, 327
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 3 cut(s) 130, 293, 538
BseYI CCCAGC 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 572
BshFI GGCC 3 cut(s) 201, 269, 427
BshNI GGYRCC 1 cut(s) 37
BsiSI CCGG 2 cut(s) 110, 257
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 3 cut(s) 54, 276, 296
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 3 cut(s) 201, 269, 427
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 2 cut(s) 253, 492
Bsp1720I GCTNAGC 1 cut(s) 28
BspACI CCGC 4 cut(s) 325, 328, 570, 572
BspANI GGCC 3 cut(s) 201, 269, 427
BspCNI CTCAG 3 cut(s) 41, 314, 328
BspEI TCCGGA 1 cut(s) 256
BspFNI CGCG 1 cut(s) 572
BspLI GGNNCC 2 cut(s) 39, 568
BspPI GGATC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 284
BssECI CCNNGG 3 cut(s) 202, 270, 570
BssMI GATC 2 cut(s) 253, 492
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 25, 549
BstDEI CTNAG 3 cut(s) 28, 301, 336
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 3 cut(s) 64, 280, 321
BstFNI CGCG 1 cut(s) 572
BstH2I RGCGCY 2 cut(s) 41, 478
BstHHI GCGC 2 cut(s) 40, 477
BstKTI GATC 2 cut(s) 256, 495
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 2 cut(s) 253, 492
BstMWI GCNNNNNNNGC 4 cut(s) 20, 29, 44, 143
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstUI CGCG 1 cut(s) 572
BstV1I GCAGC 3 cut(s) 130, 293, 538
BsuRI GGCC 3 cut(s) 201, 269, 427
BtgI CCRYGG 1 cut(s) 570
BtsCI GGATG 3 cut(s) 64, 280, 321
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 25, 549
CfoI GCGC 2 cut(s) 40, 477
Cfr13I GGNCC 3 cut(s) 91, 112, 426
Cfr42I CCGCGG 1 cut(s) 573
Csp6I GTAC 2 cut(s) 82, 499
CviAII CATG 2 cut(s) 484, 490
CviQI GTAC 2 cut(s) 82, 499
DdeI CTNAG 3 cut(s) 28, 301, 336
DinI GGCGCC 1 cut(s) 39
DpnI GATC 2 cut(s) 255, 494
DpnII GATC 2 cut(s) 253, 492
DraI TTTAAA 1 cut(s) 313
EciI GGCGGA 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 269
Eco47I GGWCC 2 cut(s) 91, 112
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 270
EgeI GGCGCC 1 cut(s) 39
EheI GGCGCC 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 2 cut(s) 487, 493
FaiI YATR 8 cut(s) 117, 196, 213, 431, 485, 491, 507, 537
FaqI GGGAC 1 cut(s) 398
FatI CATG 2 cut(s) 483, 489
FbaI TGATCA 1 cut(s) 492
Fnu4HI GCNGC 4 cut(s) 144, 282, 328, 552
FokI GGATG 3 cut(s) 71, 287, 308
Fsp4HI GCNGC 4 cut(s) 144, 282, 328, 552
GlaI GCGC 2 cut(s) 39, 476
GluI GCNGC 4 cut(s) 144, 282, 328, 552
GsaI CCCAGC 1 cut(s) 128
HaeII RGCGCY 2 cut(s) 41, 478
HaeIII GGCC 3 cut(s) 201, 269, 427
HapII CCGG 2 cut(s) 110, 257
HhaI GCGC 2 cut(s) 40, 477
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 2 cut(s) 487, 493
Hin6I GCGC 2 cut(s) 38, 475
HinP1I GCGC 2 cut(s) 38, 475
HinfI GANTC 2 cut(s) 100, 220
HpaII CCGG 2 cut(s) 110, 257
Hpy188I TCNGA 2 cut(s) 304, 387
Hpy188III TCNNGA 3 cut(s) 217, 257, 335
HpyAV CCTTC 2 cut(s) 341, 403
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 3 cut(s) 23, 487, 554
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 29, 44, 143
HpyF3I CTNAG 3 cut(s) 28, 301, 336
HpySE526I ACGT 1 cut(s) 74
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 2 cut(s) 487, 493
HspAI GCGC 2 cut(s) 38, 475
KasI GGCGCC 1 cut(s) 37
Kpn2I TCCGGA 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 492
KspI CCGCGG 1 cut(s) 573
Kzo9I GATC 2 cut(s) 253, 492
LmnI GCTCC 2 cut(s) 259, 572
Lsp1109I GCAGC 3 cut(s) 130, 293, 538
LweI GCATC 1 cut(s) 10
MaeII ACGT 1 cut(s) 74
MalI GATC 2 cut(s) 255, 494
MboI GATC 2 cut(s) 253, 492
MluCI AATT 1 cut(s) 207
Mly113I GGCGCC 1 cut(s) 38
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 7 cut(s) 48, 51, 63, 259, 290, 446, 525
MroI TCCGGA 1 cut(s) 256
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 2 cut(s) 110, 257
MspR9I CCNGG 1 cut(s) 203
MssI GTTTAAAC 1 cut(s) 313
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 572
MwoI GCNNNNNNNGC 4 cut(s) 20, 29, 44, 143
NarI GGCGCC 1 cut(s) 38
NdeII GATC 2 cut(s) 253, 492
NlaIII CATG 2 cut(s) 487, 493
NlaIV GGNNCC 2 cut(s) 39, 568
PceI AGGCCT 1 cut(s) 269
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 4 cut(s) 145, 283, 329, 553
PleI GAGTC 1 cut(s) 94
PluTI GGCGCC 1 cut(s) 41
PmeI GTTTAAAC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 124
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 39, 568
PspPI GGNCC 3 cut(s) 91, 112, 426
RsaI GTAC 2 cut(s) 83, 500
RsaNI GTAC 2 cut(s) 82, 499
RseI CAYNNNNRTG 1 cut(s) 488
SacII CCGCGG 1 cut(s) 573
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 4 cut(s) 144, 282, 328, 552
Sau3AI GATC 2 cut(s) 253, 492
Sau96I GGNCC 3 cut(s) 91, 112, 426
ScaI AGTACT 1 cut(s) 83
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 203
SetI ASST 6 cut(s) 77, 122, 252, 264, 395, 536
SfaNI GCATC 1 cut(s) 10
SfoI GGCGCC 1 cut(s) 39
Sfr303I CCGCGG 1 cut(s) 573
SgrBI CCGCGG 1 cut(s) 573
SinI GGWCC 2 cut(s) 91, 112
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 207
SseBI AGGCCT 1 cut(s) 269
SsiI CCGC 4 cut(s) 325, 328, 570, 572
SspDI GGCGCC 1 cut(s) 37
StuI AGGCCT 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 98
TasI AATT 1 cut(s) 207
TatI WGTACW 2 cut(s) 81, 498
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 39
TseI GCWGC 3 cut(s) 143, 281, 551
TspDTI ATGAA 2 cut(s) 310, 485
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 2 cut(s) 91, 112
XapI RAATTY 1 cut(s) 207
ZrmI AGTACT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.