AT2G05210

Telomeric single stranded DNA binding POT1/CDC13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004123
Physical Location & Seq
Forward (+)
1890684 .. 1894514
3831 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G05210.3

Sequence Viewer

Length: 1404 bp
ATGGCGAAGAAGAGAGAGAGTCCCAAGCTCATCAAAATCAAAGACGCCATTAAACTCATCAACCAACAAGTCAGTCTCATTGGTATCGTCCTTGAACAAAGAGAACCAAAACAATGTCGCAACAATGATTGGATTTGTACGCTACGGATAATTGATGATACGTATCCAAGTCCTGGACTTACTGTTAATGTATTTAGTAAGACTCTTGAACAACTTCCTCAAATCAAGAACCACGACGACATGATTCTGTTTACTCGCATTAAGATGCAAACTTTTGATAGTGGAGAAAGAGTAAATGCTGCTTGTAGTAGATGGGTTTCTTCCTTTGCCTTGTTCGAAGGTGTGGATTTTGTTTGTTACCAATGTAGTACCAATTTTCATGAAGAAGAAGCATTATACAAGAGTGCCATGGATGATTTACGCAAAGTTTTTGCGGGTTGTAGCCAAGTTATTAAAGCTATGCAGAGTATATCTTACAGAACAAAACCTTGCTCCGAAGTTTTTTCCTTCTTGAGAGAGATCAAGATAGGAAAACGCTTTGATTTGGTGTGCAGGATTCTCCATGCCGATGAAGATACTAGCGCTGTTTTTGTTTGGGACGGGACTGATGCACCCCCAGCATCTATTCTGGCTAAGAGAAGTGAAGAAGACAAGGCATTTAGCAGTCTCTCTGTTCATACTTTACTGTCAAGAGATGTACTGCTCAGCTTTCCAACCGTTGGAACGATCTTGAGAGTTCATCTAAGCAGTCATCTATTTTATCGGGTTAAACCTGGTGATTGGGTGAAACTTTACCATTTACTCTGTGAAGTTGATAGAGGATCTTGGGTAATCAAAGTTACCAGCTCTACAAAGGTTCATCATCTCGCTCAAGATGATCGTTTAGTTGAAAAGATCATGAGGATATATGATAAGAGACTATCATCAAAGTTGGGACACATTTCATTCTGGTGTTTTCCGTCACCTCCTGGATTAACAGAGACAGATGACAATTGTGCCCCATTTGTTACACTGATGGACATCATAACATTCCCCAAGGTTACATGCAAGTACAGATGTATTGTTCGGGTTGTAGCTGCATATCCTTGGCAAGTAGAGGATTTCTGTTCAGATGAGAATCGCCGTCACCACCAAGTTTTGTTGACACTGGAGGATTCAACAGCGACTTTAGAGGCTTTCTTATGCAATAAAGACGCAGAGTACTTTTGGGGTTTAGGGTTTCAGGACACAGAGACGCTGAGGAAGAAGCGGAATTGGTTGCTCGGTATACGGGAAAGCTCGAACTTTGTGGCTCCAAGAAATCCACCATGGATCGAGTGCTGCATCCTCTCCTACTATACTAACAAAGCTGACCCGTGGAATACTAGATTATACAGAATCTTTGGTACTAGACTACTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0007004 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010521 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010638 GO:0010833 GO:0016043 GO:0016233 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030234 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0034641 GO:0034645 GO:0034654 GO:0042162 GO:0042592 GO:0043047 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:0098505 GO:0098687 GO:0098772 GO:0098847 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1904356 GO:1904358 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
POT1 POT1PC

Protein Analysis

467

Amino Acids

53.92

Weight (kDa)

8.46

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POT1 PF02765 12 - 143 1.6e-30 Telomeric single stranded DNA binding POT1/CDC13
OB_POT1A PF25507 322 - 451 2.5e-49 POT1A-like, OB fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 173, 719
AccI GTMKAC 1 cut(s) 1267
AciI CCGC 2 cut(s) 434, 1249
AclWI GGATC 2 cut(s) 829, 1319
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 6 cut(s) 139, 370, 699, 1052, 1202, 1387
AfeI AGCGCT 1 cut(s) 583
AfiI CCNNNNNNNGG 2 cut(s) 173, 719
AgsI TTSAA 4 cut(s) 95, 209, 890, 1158
AjnI CCWGG 3 cut(s) 172, 772, 967
AluBI AGCT 7 cut(s) 28, 458, 708, 846, 1076, 1278, 1349
AluI AGCT 7 cut(s) 28, 458, 708, 846, 1076, 1278, 1349
Alw26I GTCTC 5 cut(s) 80, 671, 910, 974, 1226
AlwI GGATC 2 cut(s) 829, 1319
Aor51HI AGCGCT 1 cut(s) 583
ApeKI GCWGC 3 cut(s) 299, 1076, 1320
Asp700I GAANNNNTTC 1 cut(s) 213
AspLEI GCGC 1 cut(s) 584
AsuHPI GGTGA 4 cut(s) 788, 796, 954, 1118
AsuII TTCGAA 1 cut(s) 336
BaeGI GKGCMC 1 cut(s) 1000
BbsI GAAGAC 1 cut(s) 654
BbvCI CCTCAGC 1 cut(s) 1238
BbvI GCAGC 3 cut(s) 286, 1063, 1307
BccI CCATC 2 cut(s) 306, 1009
BceAI ACGGC 1 cut(s) 1107
BciT130I CCWGG 3 cut(s) 174, 774, 969
BciVI GTATCC 1 cut(s) 174
BcoDI GTCTC 5 cut(s) 80, 671, 910, 974, 1226
BfaI CTAG 3 cut(s) 579, 1365, 1389
BfoI RGCGCY 1 cut(s) 585
BfuI GTATCC 1 cut(s) 174
BisI GCNGC 3 cut(s) 300, 1077, 1321
BlpI GCTNAGC 1 cut(s) 704
BlsI GCNGC 3 cut(s) 301, 1078, 1322
BmcAI AGTACT 1 cut(s) 1202
Bme1390I CCNGG 3 cut(s) 174, 774, 969
BmiI GGNNCC 1 cut(s) 1293
BmrFI CCNGG 3 cut(s) 174, 774, 969
BmsI GCATC 4 cut(s) 255, 598, 629, 1332
BpiI GAAGAC 1 cut(s) 654
BpmI CTGGAG 1 cut(s) 1169
Bpu10I CCTNAGC 1 cut(s) 1238
Bpu1102I GCTNAGC 1 cut(s) 704
Bpu14I TTCGAA 1 cut(s) 336
BpuEI CTTGAG 3 cut(s) 532, 751, 855
BsaAI YACGTR 1 cut(s) 162
BsaBI GATNNNNATC 3 cut(s) 162, 1019, 1116
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 5 cut(s) 408, 1035, 1085, 1307, 1355
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 719
Bse1I ACTGG 1 cut(s) 1152
Bse8I GATNNNNATC 3 cut(s) 162, 1019, 1116
BseBI CCWGG 3 cut(s) 174, 774, 969
BseDI CCNNGG 5 cut(s) 408, 1035, 1085, 1307, 1355
BseGI GGATG 2 cut(s) 418, 1323
BseJI GATNNNNATC 3 cut(s) 162, 1019, 1116
BseLI CCNNNNNNNGG 2 cut(s) 173, 719
BseMII CTCAG 2 cut(s) 718, 1229
BseNI ACTGG 1 cut(s) 1152
BseSI GKGCMC 1 cut(s) 1000
BseXI GCAGC 3 cut(s) 286, 1063, 1307
BseYI CCCAGC 1 cut(s) 616
BsgI GTGCAG 1 cut(s) 571
BslFI GGGAC 4 cut(s) 6, 611, 616, 948
BslI CCNNNNNNNGG 2 cut(s) 173, 719
BsmAI GTCTC 5 cut(s) 80, 671, 910, 974, 1226
BsmBI CGTCTC 1 cut(s) 1226
BsmFI GGGAC 4 cut(s) 6, 611, 616, 948
Bsp119I TTCGAA 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 1000
Bsp143I GATC 6 cut(s) 519, 726, 821, 877, 894, 1311
Bsp1720I GCTNAGC 1 cut(s) 704
Bsp19I CCATGG 2 cut(s) 408, 1307
BspACI CCGC 2 cut(s) 434, 1249
BspCNI CTCAG 2 cut(s) 717, 1230
BspHI TCATGA 2 cut(s) 379, 897
BspLI GGNNCC 1 cut(s) 1293
BspPI GGATC 2 cut(s) 829, 1319
BspT104I TTCGAA 1 cut(s) 336
BsrI ACTGG 1 cut(s) 1152
BssECI CCNNGG 5 cut(s) 408, 1035, 1085, 1307, 1355
BssMI GATC 6 cut(s) 519, 726, 821, 877, 894, 1311
BssNAI GTATAC 1 cut(s) 1268
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 4 cut(s) 408, 1035, 1085, 1307
Bst1107I GTATAC 1 cut(s) 1268
Bst2UI CCWGG 3 cut(s) 174, 774, 969
Bst4CI ACNGT 3 cut(s) 184, 687, 718
Bst6I CTCTTC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 45
BstBAI YACGTR 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 336
BstDEI CTNAG 4 cut(s) 633, 704, 743, 1238
BstDSI CCRYGG 3 cut(s) 408, 1307, 1355
BstF5I GGATG 2 cut(s) 418, 1323
BstH2I RGCGCY 1 cut(s) 585
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 6 cut(s) 522, 729, 824, 880, 897, 1314
BstMAI GTCTC 5 cut(s) 80, 671, 910, 974, 1226
BstMBI GATC 6 cut(s) 519, 726, 821, 877, 894, 1311
BstMWI GCNNNNNNNGC 1 cut(s) 617
BstNI CCWGG 3 cut(s) 174, 774, 969
BstNSI RCATGY 1 cut(s) 1047
BstSCI CCNGG 3 cut(s) 172, 772, 967
BstSLI GKGCMC 1 cut(s) 1000
BstSNI TACGTA 1 cut(s) 162
BstV1I GCAGC 3 cut(s) 286, 1063, 1307
BstV2I GAAGAC 1 cut(s) 654
BstX2I RGATCY 1 cut(s) 821
BstYI RGATCY 1 cut(s) 821
BstZ17I GTATAC 1 cut(s) 1268
BsuI GTATCC 1 cut(s) 174
BtgI CCRYGG 3 cut(s) 408, 1307, 1355
BtsCI GGATG 2 cut(s) 418, 1323
BtsIMutI CAGTG 2 cut(s) 1010, 1145
CciI TCATGA 2 cut(s) 379, 897
CfoI GCGC 1 cut(s) 584
CseI GACGC 3 cut(s) 53, 1202, 1243
CsiI ACCWGGT 1 cut(s) 772
Csp6I GTAC 6 cut(s) 138, 369, 698, 1051, 1201, 1386
CviAII CATG 7 cut(s) 241, 380, 409, 563, 898, 1044, 1308
CviQI GTAC 6 cut(s) 138, 369, 698, 1051, 1201, 1386
DdeI CTNAG 4 cut(s) 633, 704, 743, 1238
DpnI GATC 6 cut(s) 521, 728, 823, 879, 896, 1313
DpnII GATC 6 cut(s) 519, 726, 821, 877, 894, 1311
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco105I TACGTA 1 cut(s) 162
Eco130I CCWWGG 4 cut(s) 408, 1035, 1085, 1307
Eco47III AGCGCT 1 cut(s) 583
EcoRII CCWGG 3 cut(s) 172, 772, 967
EcoT14I CCWWGG 4 cut(s) 408, 1035, 1085, 1307
ErhI CCWWGG 4 cut(s) 408, 1035, 1085, 1307
Esp3I CGTCTC 1 cut(s) 1226
FaeI CATG 7 cut(s) 244, 383, 412, 566, 901, 1047, 1311
FaqI GGGAC 4 cut(s) 6, 611, 616, 948
FatI CATG 7 cut(s) 240, 379, 408, 562, 897, 1043, 1307
FauI CCCGC 1 cut(s) 427
FblI GTMKAC 1 cut(s) 1267
Fnu4HI GCNGC 3 cut(s) 300, 1077, 1321
FokI GGATG 2 cut(s) 425, 1310
Fsp4HI GCNGC 3 cut(s) 300, 1077, 1321
FspBI CTAG 3 cut(s) 579, 1365, 1389
GlaI GCGC 1 cut(s) 583
GluI GCNGC 3 cut(s) 300, 1077, 1321
GsaI CCCAGC 1 cut(s) 620
GsuI CTGGAG 1 cut(s) 1169
HaeII RGCGCY 1 cut(s) 585
HgaI GACGC 3 cut(s) 53, 1202, 1243
HhaI GCGC 1 cut(s) 584
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 7 cut(s) 244, 383, 412, 566, 901, 1047, 1311
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HincII GTYRAC 1 cut(s) 1143
HindII GTYRAC 1 cut(s) 1143
HinfI GANTC 7 cut(s) 19, 202, 244, 556, 1117, 1154, 1377
HphI GGTGA 4 cut(s) 788, 796, 954, 1118
Hpy166II GTNNAC 3 cut(s) 252, 1143, 1268
Hpy188I TCNGA 2 cut(s) 496, 1111
Hpy8I GTNNAC 3 cut(s) 252, 1143, 1268
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 332, 517
HpyCH4III ACNGT 3 cut(s) 184, 687, 718
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 8 cut(s) 268, 463, 552, 611, 1047, 1079, 1185, 1323
HpyF10VI GCNNNNNNNGC 1 cut(s) 617
HpyF3I CTNAG 4 cut(s) 633, 704, 743, 1238
HpySE526I ACGT 1 cut(s) 161
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 7 cut(s) 244, 383, 412, 566, 901, 1047, 1311
HspAI GCGC 1 cut(s) 582
Kzo9I GATC 6 cut(s) 519, 726, 821, 877, 894, 1311
LmnI GCTCC 2 cut(s) 497, 1297
Lsp1109I GCAGC 3 cut(s) 286, 1063, 1307
LweI GCATC 4 cut(s) 255, 598, 629, 1332
MabI ACCWGGT 1 cut(s) 772
MaeI CTAG 3 cut(s) 579, 1365, 1389
MaeII ACGT 1 cut(s) 161
MaeIII GTNAC 6 cut(s) 356, 838, 960, 1006, 1039, 1124
MalI GATC 6 cut(s) 521, 728, 823, 879, 896, 1313
MboI GATC 6 cut(s) 519, 726, 821, 877, 894, 1311
MboII GAAGA 9 cut(s) 19, 22, 312, 395, 398, 584, 656, 659, 1255
MfeI CAATTG 1 cut(s) 991
MflI RGATCY 1 cut(s) 821
MhlI GDGCHC 1 cut(s) 1000
MluCI AATT 4 cut(s) 150, 373, 991, 1252
MlyI GAGTC 2 cut(s) 28, 196
MmeI TCCRAC 2 cut(s) 700, 737
MnlI CCTC 9 cut(s) 228, 812, 894, 975, 1090, 1144, 1165, 1233, 1337
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 7 cut(s) 51, 186, 261, 453, 768, 974, 1402
MslI CAYNNNNRTG 3 cut(s) 263, 567, 949
MspR9I CCNGG 3 cut(s) 174, 774, 969
MunI CAATTG 1 cut(s) 991
MvaI CCWGG 3 cut(s) 174, 774, 969
MwoI GCNNNNNNNGC 1 cut(s) 617
NcoI CCATGG 2 cut(s) 408, 1307
NdeII GATC 6 cut(s) 519, 726, 821, 877, 894, 1311
NlaIII CATG 7 cut(s) 244, 383, 412, 566, 901, 1047, 1311
NlaIV GGNNCC 1 cut(s) 1293
NmuCI GTSAC 2 cut(s) 960, 1124
NspI RCATGY 1 cut(s) 1047
NspV TTCGAA 1 cut(s) 336
PagI TCATGA 2 cut(s) 379, 897
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 5 cut(s) 244, 556, 1117, 1154, 1377
PflMI CCANNNNNTGG 2 cut(s) 173, 719
PfoI TCCNGGA 2 cut(s) 172, 967
PkrI GCNGC 3 cut(s) 301, 1078, 1322
PleI GAGTC 2 cut(s) 27, 196
PpsI GAGTC 2 cut(s) 27, 196
Ppu21I YACGTR 1 cut(s) 162
Psp6I CCWGG 3 cut(s) 172, 772, 967
PspFI CCCAGC 1 cut(s) 616
PspGI CCWGG 3 cut(s) 172, 772, 967
PspN4I GGNNCC 1 cut(s) 1293
PsuI RGATCY 1 cut(s) 821
RsaI GTAC 6 cut(s) 139, 370, 699, 1052, 1202, 1387
RsaNI GTAC 6 cut(s) 138, 369, 698, 1051, 1201, 1386
RseI CAYNNNNRTG 3 cut(s) 263, 567, 949
SaqAI TTAA 7 cut(s) 51, 186, 261, 453, 768, 974, 1402
SatI GCNGC 3 cut(s) 300, 1077, 1321
Sau3AI GATC 6 cut(s) 519, 726, 821, 877, 894, 1311
ScaI AGTACT 1 cut(s) 1202
SchI GAGTC 2 cut(s) 28, 196
ScrFI CCNGG 3 cut(s) 174, 774, 969
SduI GDGCHC 1 cut(s) 1000
SexAI ACCWGGT 1 cut(s) 772
SfaNI GCATC 4 cut(s) 255, 598, 629, 1332
SfuI TTCGAA 1 cut(s) 336
SmiMI CAYNNNNRTG 3 cut(s) 263, 567, 949
SmlI CTYRAG 3 cut(s) 511, 730, 870
SmoI CTYRAG 3 cut(s) 511, 730, 870
SnaBI TACGTA 1 cut(s) 162
Sse9I AATT 4 cut(s) 150, 373, 991, 1252
SsiI CCGC 2 cut(s) 434, 1249
SspMI CTAG 3 cut(s) 579, 1365, 1389
StyD4I CCNGG 3 cut(s) 172, 772, 967
StyI CCWWGG 4 cut(s) 408, 1035, 1085, 1307
TaaI ACNGT 3 cut(s) 184, 687, 718
TaiI ACGT 1 cut(s) 164
TaqI TCGA 3 cut(s) 336, 1280, 1314
TasI AATT 4 cut(s) 150, 373, 991, 1252
TatI WGTACW 3 cut(s) 697, 1050, 1200
TfiI GAWTC 5 cut(s) 244, 556, 1117, 1154, 1377
Tru1I TTAA 7 cut(s) 51, 186, 261, 453, 768, 974, 1402
Tru9I TTAA 7 cut(s) 51, 186, 261, 453, 768, 974, 1402
TscAI CASTG 2 cut(s) 1017, 1152
TseFI GTSAC 2 cut(s) 960, 1124
TseI GCWGC 3 cut(s) 299, 1076, 1320
Tsp45I GTSAC 2 cut(s) 960, 1124
TspDTI ATGAA 8 cut(s) 368, 396, 585, 665, 728, 848, 933, 1388
TspGWI ACGGA 2 cut(s) 160, 948
TspRI CASTG 2 cut(s) 1017, 1152
Van91I CCANNNNNTGG 2 cut(s) 173, 719
XceI RCATGY 1 cut(s) 1047
XmiI GTMKAC 1 cut(s) 1267
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 3 cut(s) 579, 1365, 1389
ZrmI AGTACT 1 cut(s) 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.