Rorug06G0416000

Protection of telomeres protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
55555347 .. 55556277
931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0416000.1

Sequence Viewer

Length: 336 bp
ATGAGTGGGAGAATTTATGTTGTGATATTCTTCTGCTGGGCTGCCCTTACTATCATCACCCCCACGCTCATTTTCTTGTCGGAGACTTCGAAACCCTACTCGGAATTACAAGATGAGGGAAGTGAAGGAATCAAGGCTAGAAGATTGATAGGATATGCTGTGAAACATCGAATGAGCACAACAACTGCACAAGATTCTTCACCTTCACCTTCACCTGCACCGGCACCAACTCCAATTTCAGAGTCAGGTTCGGTGATTAGTCCAATCGATCTTGCAAAAGTCTTCTCGGAATCATTGAGAATGGTGATCAGAAAGACTAAACTCCGGTTGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0007004 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010521 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010638 GO:0010833 GO:0016043 GO:0016233 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030234 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0034641 GO:0034645 GO:0034654 GO:0042162 GO:0042592 GO:0043047 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044092 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:0098505 GO:0098687 GO:0098772 GO:0098847 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1904356 GO:1904358 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.14

Weight (kDa)

9.51

Isoelectric Point (pI)

72.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 223
Acc36I ACCTGC 1 cut(s) 223
AccB1I GGYRCC 1 cut(s) 223
AcsI RAATTY 1 cut(s) 12
AjiI CACGTC 1 cut(s) 333
AjuI GAANNNNNNNTTGG 2 cut(s) 220, 252
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 12
AsuHPI GGTGA 6 cut(s) 49, 192, 198, 204, 265, 316
AsuII TTCGAA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 28
BclI TGATCA 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 223
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 274
Bpu14I TTCGAA 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 324
Bse118I RCCGGY 1 cut(s) 220
BseCI ATCGAT 1 cut(s) 267
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 1 cut(s) 36
BsgI GTGCAG 2 cut(s) 171, 201
BshNI GGYRCC 1 cut(s) 223
BshVI ATCGAT 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 221, 325
BsmAI GTCTC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 2 cut(s) 268, 306
BspDI ATCGAT 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 225
BspMI ACCTGC 1 cut(s) 223
BspT104I TTCGAA 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssMI GATC 2 cut(s) 268, 306
BstBI TTCGAA 1 cut(s) 89
BstKTI GATC 2 cut(s) 271, 309
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 268, 306
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 274
Bsu15I ATCGAT 1 cut(s) 267
BsuTUI ATCGAT 1 cut(s) 267
BtrI CACGTC 1 cut(s) 333
BveI ACCTGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 220
ClaI ATCGAT 1 cut(s) 267
CviJI RGCY 2 cut(s) 41, 137
CviKI_1 RGCY 2 cut(s) 41, 137
DpnI GATC 2 cut(s) 270, 308
DpnII GATC 2 cut(s) 268, 306
FaiI YATR 2 cut(s) 18, 156
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 138
GluI GCNGC 1 cut(s) 42
GsaI CCCAGC 1 cut(s) 40
HapII CCGG 2 cut(s) 221, 325
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 4 cut(s) 129, 194, 242, 290
HpaII CCGG 2 cut(s) 221, 325
HphI GGTGA 6 cut(s) 49, 192, 198, 204, 265, 316
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 5 cut(s) 82, 103, 241, 289, 311
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 3 cut(s) 119, 213, 219
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 3 cut(s) 188, 218, 275
HpySE526I ACGT 1 cut(s) 332
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 2 cut(s) 268, 306
LpnPI CCDG 4 cut(s) 22, 228, 231, 234
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 1 cut(s) 138
MaeII ACGT 1 cut(s) 332
MalI GATC 2 cut(s) 270, 308
MboI GATC 2 cut(s) 268, 306
MboII GAAGA 4 cut(s) 22, 153, 189, 274
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 3 cut(s) 12, 104, 234
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 1 cut(s) 109
MspI CCGG 2 cut(s) 221, 325
NdeII GATC 2 cut(s) 268, 306
NlaIV GGNNCC 1 cut(s) 225
NspV TTCGAA 1 cut(s) 89
PaqCI CACCTGC 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PfeI GAWTC 3 cut(s) 129, 194, 290
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 225
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 268, 306
SchI GAGTC 1 cut(s) 251
SduI GDGCHC 1 cut(s) 179
SetI ASST 5 cut(s) 205, 211, 217, 250, 335
SfuI TTCGAA 1 cut(s) 89
Sse9I AATT 3 cut(s) 12, 104, 234
SspMI CTAG 1 cut(s) 138
TaiI ACGT 1 cut(s) 335
TaqI TCGA 3 cut(s) 89, 169, 267
TasI AATT 3 cut(s) 12, 104, 234
TfiI GAWTC 3 cut(s) 129, 194, 290
TseI GCWGC 1 cut(s) 41
XapI RAATTY 1 cut(s) 12
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.