Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011143

Physical Location & Seq

Genomic Coordinates Forward (+)

1588193 .. 1590166

Gene Structure 1974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G04550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGGAAGAGAGAAAGAGAGAACCCTTGTTCGATTTGTGGGCATTACCATAAGTACGAGGAAGGAGAAGTATGTGGAGTCTGTGGTCACTGTATGCCTGTTTCTTCCGATACGGTGGCGCCGCAACAAGTCCACGTCAGTGCTTTTCCGTCGGAGATTCTCCCTGAGTTTCTTTACCTCGGTAGTTACGACAACGCTTCTCGCTCTGAGCTTCTTAAGACTCAAGGAATCTCTCGTGTTCTTAATACGGTTCCTATGTGCCAGAATCTCTACAGGAATTCATTCACTTATCATGGTCTTGATAATGAAAAAGTTTTACAGTTTGATGATGCTATTAAGTTCTTAGACCAATGTGAGAAGGACAAGGCACGTGTTCTTGTGCATTGCATGTCTGGGAAAAGTAGATCACCAGCGGTTGTTGTAGCGTACTTGATGAAACGAAAAGGGTGGAGACTCGCTGAGAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAGAGTTTTACCAACAACTGCAGGAGTTTGAGCAGGGGATATTCGGATCTGAGATGATGTCGGCGATGAATATTAATGATGCTCCAACGTTTGGGTTTGGTTTCCCTAAGATTGATAATCAAGCACAAGCTCCTGTGTTCAACAATGCTCCTACTTCTTCTATATTTTCATCTCCTGCTTCAAGTATCCCTCCTCAGGAGTTCACTTTTGGAGCAACTCCACCAAAGCCAACAACTGGTGGTGATATTGCAATGGATGGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001101 GO:0001558 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033673 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0046620 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048638 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0061388 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0080090 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

DSPc

Protein Analysis

257

Amino Acids

28.69

Weight (kDa)

6.17

Isoelectric Point (pI)

65.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	58 - 165	1.4e-22	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04550 AT2G04550
fragaria_vesca	FvH4_6g41790
malus_domestica	MD09G1117100.v1.1 MD17G1108600.v1.1
prunus_persica	Prupe.3G206700_v2.0.a1 Prupe.3G206700_v2.0.a1
pyrus_communis	pycom09g04210 pycom17g10110
rosa_chinensis	RchiOBHm_Chr2g0157611
rosa_laevigata	RLG00000021000
rosa_multiflora	Rmu_sc0000195.1_g000049
rosa_roxburghii	Rroxscaffold_2G00092090
rosa_rugosa	Rorug02G0462300 Rorug02G0462300
rosa_samantha	Rh2AG526400 Rh2BG541300 Rh2CG511100 Rh2DG549800
rosa_wichuraiana	Rw2G043600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	118
AccB7I	CCANNNNNTGG	2 cut(s)	599, 743
AciI	CCGC	2 cut(s)	122, 413
AclI	AACGTT	1 cut(s)	596
AclWI	GGATC	1 cut(s)	562
AcsI	RAATTY	1 cut(s)	277
AcvI	CACGTG	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	2 cut(s)	56, 428
AfiI	CCNNNNNNNGG	3 cut(s)	599, 703, 743
AflII	CTTAAG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	2 cut(s)	649, 690
AjiI	CACGTC	1 cut(s)	136
AleI	CACNNNNGTG	1 cut(s)	138
AluBI	AGCT	2 cut(s)	211, 638
AluI	AGCT	2 cut(s)	211, 638
Alw26I	GTCTC	2 cut(s)	445, 481
AlwI	GGATC	1 cut(s)	562
ApoI	RAATTY	1 cut(s)	277
AseI	ATTAAT	1 cut(s)	582
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	399, 761
AxyI	CCTNAGG	1 cut(s)	702
BanI	GGYRCC	1 cut(s)	118
BauI	CACGAG	1 cut(s)	234
BbrPI	CACGTG	1 cut(s)	371
BccI	CCATC	1 cut(s)	758
BciVI	GTATCC	1 cut(s)	704
BcoDI	GTCTC	2 cut(s)	445, 481
BfmI	CTRYAG	2 cut(s)	271, 527
BfoI	RGCGCY	1 cut(s)	122
BfrI	CTTAAG	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	704
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
BmgBI	CACGTC	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	120, 252
BmsI	GCATC	2 cut(s)	319, 577
BoxI	GACNNNNGTC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	3 cut(s)	599, 703, 743
Bse1I	ACTGG	1 cut(s)	748
Bse21I	CCTNAGG	1 cut(s)	702
Bse3DI	GCAATG	2 cut(s)	382, 765
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	769
BseLI	CCNNNNNNNGG	3 cut(s)	599, 703, 743
BseMI	GCAATG	2 cut(s)	382, 765
BseMII	CTCAG	5 cut(s)	156, 198, 450, 549, 716
BseNI	ACTGG	1 cut(s)	748
BseRI	GAGGAG	1 cut(s)	690
BshNI	GGYRCC	1 cut(s)	118
BslI	CCNNNNNNNGG	3 cut(s)	599, 703, 743
BsmAI	GTCTC	2 cut(s)	445, 481
Bso31I	GGTCTC	1 cut(s)	481
Bsp143I	GATC	2 cut(s)	404, 554
BspACI	CCGC	2 cut(s)	122, 413
BspCNI	CTCAG	5 cut(s)	157, 199, 451, 550, 715
BspLI	GGNNCC	2 cut(s)	120, 252
BspMAI	CTGCAG	1 cut(s)	531
BspPI	GGATC	1 cut(s)	562
BspT107I	GGYRCC	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	481
BsrDI	GCAATG	2 cut(s)	382, 765
BsrI	ACTGG	1 cut(s)	748
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	2 cut(s)	404, 554
BssNI	GRCGYC	1 cut(s)	119
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst4CI	ACNGT	4 cut(s)	92, 115, 250, 321
Bst6I	CTCTTC	1 cut(s)	2
BstACI	GRCGYC	1 cut(s)	119
BstAFI	CTTAAG	1 cut(s)	215
BstBAI	YACGTR	1 cut(s)	371
BstDEI	CTNAG	8 cut(s)	165, 207, 343, 459, 558, 615, 702, 771
BstF5I	GGATG	1 cut(s)	769
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	407, 557
BstMAI	GTCTC	2 cut(s)	445, 481
BstMBI	GATC	2 cut(s)	404, 554
BstNSI	RCATGY	1 cut(s)	391
BstPAI	GACNNNNGTC	1 cut(s)	504
BstSFI	CTRYAG	2 cut(s)	271, 527
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
Bsu36I	CCTNAGG	1 cut(s)	702
BsuI	GTATCC	1 cut(s)	704
BtgZI	GCGATG	1 cut(s)	587
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	769
BtsIMutI	CAGTG	4 cut(s)	88, 145, 476, 495
CfoI	GCGC	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	55, 427
CviAII	CATG	2 cut(s)	293, 388
CviJI	RGCY	4 cut(s)	211, 638, 736, 768
CviKI_1	RGCY	4 cut(s)	211, 638, 736, 768
CviQI	GTAC	2 cut(s)	55, 427
DdeI	CTNAG	8 cut(s)	165, 207, 343, 459, 558, 615, 702, 771
DinI	GGCGCC	1 cut(s)	120
DpnI	GATC	2 cut(s)	406, 556
DpnII	GATC	2 cut(s)	404, 554
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco31I	GGTCTC	1 cut(s)	481
Eco72I	CACGTG	1 cut(s)	371
Eco81I	CCTNAGG	1 cut(s)	702
EcoRI	GAATTC	1 cut(s)	277
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
FaeI	CATG	2 cut(s)	296, 391
FaiI	YATR	8 cut(s)	51, 73, 95, 257, 294, 389, 503, 671
FatI	CATG	2 cut(s)	292, 387
Fnu4HI	GCNGC	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	122
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	122
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	296, 391
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	7 cut(s)	78, 157, 220, 228, 265, 453, 463
HphI	GGTGA	2 cut(s)	399, 761
Hpy166II	GTNNAC	2 cut(s)	133, 711
Hpy188I	TCNGA	5 cut(s)	109, 154, 208, 554, 559
Hpy188III	TCNNGA	3 cut(s)	299, 509, 704
Hpy8I	GTNNAC	2 cut(s)	133, 711
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	56, 352
HpyCH4III	ACNGT	4 cut(s)	92, 115, 250, 321
HpyCH4IV	ACGT	3 cut(s)	135, 370, 596
HpyCH4V	TGCA	4 cut(s)	382, 387, 529, 758
HpyF3I	CTNAG	8 cut(s)	165, 207, 343, 459, 558, 615, 702, 771
HpySE526I	ACGT	3 cut(s)	135, 370, 596
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	296, 391
HspAI	GCGC	1 cut(s)	119
KasI	GGCGCC	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	404, 554
LmnI	GCTCC	4 cut(s)	595, 643, 661, 719
LweI	GCATC	2 cut(s)	319, 577
MaeII	ACGT	3 cut(s)	135, 370, 596
MaeIII	GTNAC	2 cut(s)	86, 185
MalI	GATC	2 cut(s)	406, 556
MboI	GATC	2 cut(s)	404, 554
MboII	GAAGA	3 cut(s)	19, 96, 657
MflI	RGATCY	1 cut(s)	554
MluCI	AATT	1 cut(s)	277
Mly113I	GGCGCC	1 cut(s)	119
MlyI	GAGTC	4 cut(s)	87, 214, 447, 472
MmeI	TCCRAC	2 cut(s)	132, 617
MnlI	CCTC	4 cut(s)	52, 188, 708, 711
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	5 cut(s)	216, 243, 336, 477, 582
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	413
MspCI	CTTAAG	1 cut(s)	215
NarI	GGCGCC	1 cut(s)	119
NdeII	GATC	2 cut(s)	404, 554
NlaIII	CATG	2 cut(s)	296, 391
NlaIV	GGNNCC	2 cut(s)	120, 252
NmuCI	GTSAC	1 cut(s)	86
NspI	RCATGY	1 cut(s)	391
OliI	CACNNNNGTG	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	3 cut(s)	157, 228, 265
PflMI	CCANNNNNTGG	2 cut(s)	599, 743
PkrI	GCNGC	1 cut(s)	123
PleI	GAGTC	4 cut(s)	86, 214, 447, 471
PluTI	GGCGCC	1 cut(s)	122
PmaCI	CACGTG	1 cut(s)	371
PmlI	CACGTG	1 cut(s)	371
PpsI	GAGTC	4 cut(s)	86, 214, 447, 471
Ppu21I	YACGTR	1 cut(s)	371
PshAI	GACNNNNGTC	1 cut(s)	504
PshBI	ATTAAT	1 cut(s)	582
Psp1406I	AACGTT	1 cut(s)	596
PspCI	CACGTG	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	120, 252
PstI	CTGCAG	1 cut(s)	531
PsuI	RGATCY	1 cut(s)	554
RsaI	GTAC	2 cut(s)	56, 428
RsaNI	GTAC	2 cut(s)	55, 427
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	5 cut(s)	216, 243, 336, 477, 582
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	2 cut(s)	404, 554
SchI	GAGTC	4 cut(s)	87, 214, 447, 472
SetI	ASST	6 cut(s)	138, 180, 213, 373, 599, 640
SfaNI	GCATC	2 cut(s)	319, 577
SfcI	CTRYAG	2 cut(s)	271, 527
SfoI	GGCGCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	2 cut(s)	215, 222
SmoI	CTYRAG	2 cut(s)	215, 222
Sse9I	AATT	1 cut(s)	277
SsiI	CCGC	2 cut(s)	122, 413
SspDI	GGCGCC	1 cut(s)	118
SspI	AATATT	1 cut(s)	580
TaaI	ACNGT	4 cut(s)	92, 115, 250, 321
TaiI	ACGT	3 cut(s)	138, 373, 599
TaqI	TCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	277
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	3 cut(s)	157, 228, 265
Tru1I	TTAA	5 cut(s)	216, 243, 336, 477, 582
Tru9I	TTAA	5 cut(s)	216, 243, 336, 477, 582
TscAI	CASTG	4 cut(s)	95, 145, 476, 502
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	5 cut(s)	270, 321, 449, 590, 666
TspGWI	ACGGA	2 cut(s)	138, 499
TspRI	CASTG	4 cut(s)	95, 145, 476, 502
Van91I	CCANNNNNTGG	2 cut(s)	599, 743
Vha464I	CTTAAG	1 cut(s)	215
VspI	ATTAAT	1 cut(s)	582
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.